Rmu_sc0002046.1_g000007

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002046.1
N/A
Physical Location & Seq
Forward (+)
33629 .. 33907
279 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
atgagcaagttgatcatgatgaggacgtctttccctattttctttgtgttgtctctcattctctcttcctcctatgctgctgtgcaagacctgtgtgttgcagactacacagctcctctagggcccgcaggctgcaaaaatcctgcaaatgttacggtggatgatttcgtctactctgccttaggagttccttgtaacccctcaaatatgatcaaagccggagtcaccaccgcatttaatttcgtctcaattccctggtttgaatggccttggcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

92

Amino Acids

10.1

Weight (kDa)

5.95

Isoelectric Point (pI)

21.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 171
AciI CCGC 2 cut(s) 126, 231
AcyI GRCGYC 1 cut(s) 26
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 57, 250
AoxI GGCC 2 cut(s) 122, 266
ApaI GGGCCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 77, 132
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspS9I GGNCC 2 cut(s) 122, 123
AsuHPI GGTGA 1 cut(s) 217
AxyI CCTNAGG 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 64, 119
BciT130I CCWGG 1 cut(s) 256
BclI TGATCA 2 cut(s) 12, 210
BcoDI GTCTC 2 cut(s) 57, 250
BfaI CTAG 1 cut(s) 119
BisI GCNGC 2 cut(s) 78, 133
BlsI GCNGC 2 cut(s) 79, 134
Bme1390I CCNGG 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 122, 123
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 254, 269
Bse21I CCTNAGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 254, 269
BseGI GGATG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 2 cut(s) 64, 119
BshFI GGCC 2 cut(s) 124, 268
BsiSI CCGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 57, 250
BsmBI CGTCTC 1 cut(s) 250
BsnI GGCC 2 cut(s) 124, 268
Bsp120I GGGCCC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 2 cut(s) 12, 210
BspACI CCGC 2 cut(s) 126, 231
BspANI GGCC 2 cut(s) 124, 268
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 254, 269
BssMI GATC 2 cut(s) 12, 210
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 126, 130
BstDEI CTNAG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 15, 213
BstMAI GTCTC 2 cut(s) 57, 250
BstMBI GATC 2 cut(s) 12, 210
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 64, 119
Bsu36I CCTNAGG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 124, 268
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 126, 130
CciI TCATGA 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 122, 123
CviAII CATG 1 cut(s) 16
CviJI RGCY 5 cut(s) 113, 124, 132, 218, 268
CviKI_1 RGCY 5 cut(s) 113, 124, 132, 218, 268
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 14, 212
DpnII GATC 2 cut(s) 12, 210
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 269
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 1 cut(s) 19
FaiI YATR 3 cut(s) 17, 75, 209
FatI CATG 1 cut(s) 15
FauI CCCGC 1 cut(s) 133
FbaI TGATCA 2 cut(s) 12, 210
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 78, 133
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 78, 133
FspBI CTAG 1 cut(s) 119
GluI GCNGC 2 cut(s) 78, 133
HaeIII GGCC 2 cut(s) 124, 268
HapII CCGG 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 1 cut(s) 19
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 4 cut(s) 85, 101, 135, 146
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 19
Ksp22I TGATCA 2 cut(s) 12, 210
Kzo9I GATC 2 cut(s) 12, 210
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 6 cut(s) 104, 114, 156, 232, 241, 268
Lsp1109I GCAGC 2 cut(s) 64, 119
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 3 cut(s) 151, 194, 223
MalI GATC 2 cut(s) 14, 212
MboI GATC 2 cut(s) 12, 210
MboII GAAGA 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 2 cut(s) 238, 249
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 4 cut(s) 15, 79, 126, 211
MseI TTAA 1 cut(s) 237
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
NdeII GATC 2 cut(s) 12, 210
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 223
PagI TCATGA 1 cut(s) 15
PkrI GCNGC 2 cut(s) 79, 134
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 124
PspOMI GGGCCC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 122, 123
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 78, 133
Sau3AI GATC 2 cut(s) 12, 210
Sau96I GGNCC 2 cut(s) 122, 123
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 126
SetI ASST 3 cut(s) 29, 93, 115
Sse9I AATT 2 cut(s) 238, 249
SsiI CCGC 2 cut(s) 126, 231
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 29
TasI AATT 2 cut(s) 238, 249
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 77, 132
Tsp45I GTSAC 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 119
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.