Rmu_sc0002049.1_g000002

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002049.1
OG0031184
Physical Location & Seq
Forward (+)
3882 .. 4596
715 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 576 bp
atggcaccgccacggcccctcacctccaccctagctctctccctctccgtcatcctcctcctcctcctcctctcctccacctcccaagcacacaacatcacccgcattctcgccaagcaccccgagctctccactttcaaccactaccttaccgtcacccacctcgccgccgagatcaaccgccgccagaccatcaccgtcctcgccatcgacaatgccgccatgtcctccatcctcgccaagcacctatccattccaaccctcaagaatgtgctctccctccacgtcctcgtggattacttcggtgccaagaagctccaccagctcaccggcggctccaccttgaccgccagcatgttccagtccaccggcacggcggacgggaccaccgggtacgtgaacatcaccaacctcaagggtggtaaagttgggttcggtactgaagataacaatgggaagctcaactccttctaccagaagtctgtgcaggagatcccatacaatatctctgtgctccaaatcagtcagaggaaagttgtgaagtgcaaactgaaaacggcagctgttctgtgttga

Protein Analysis

191

Amino Acids

20.63

Weight (kDa)

9.83

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 42 - 135 2e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031184)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002049.1_g000002 Rmu_sc0003417.1_g000027

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 305
AciI CCGC 9 cut(s) 8, 103, 168, 181, 184, 219, 333, 348, 377
AclWI GGATC 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 2 cut(s) 395, 439
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 1 cut(s) 286
AluBI AGCT 6 cut(s) 35, 127, 316, 325, 460, 563
AluI AGCT 6 cut(s) 35, 127, 316, 325, 460, 563
Alw21I GWGCWC 3 cut(s) 129, 276, 516
AlwI GGATC 1 cut(s) 487
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 560
AspS9I GGNCC 2 cut(s) 15, 384
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 6 cut(s) 13, 91, 148, 187, 319, 397
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 384
BanI GGYRCC 2 cut(s) 4, 305
BanII GRGCYC 1 cut(s) 129
BauI CACGAG 1 cut(s) 290
Bbv12I GWGCWC 3 cut(s) 129, 276, 516
BbvI GCAGC 1 cut(s) 572
BccI CCATC 3 cut(s) 200, 215, 239
BceAI ACGGC 3 cut(s) 29, 390, 573
BcnI CCSGG 1 cut(s) 391
BfaI CTAG 1 cut(s) 32
BisI GCNGC 5 cut(s) 168, 184, 219, 334, 561
BlsI GCNGC 5 cut(s) 169, 185, 220, 335, 562
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 1 cut(s) 384
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 15, 384
BmiI GGNNCC 5 cut(s) 6, 17, 307, 337, 385
BmrFI CCNGG 1 cut(s) 391
BpuEI CTTGAG 2 cut(s) 248, 398
BpuMI CCSGG 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 11
Bse118I RCCGGY 2 cut(s) 329, 368
Bse1I ACTGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 51, 231
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 6 cut(s) 47, 50, 53, 56, 59, 64
BseXI GCAGC 1 cut(s) 572
BsgI GTGCAG 1 cut(s) 506
BshFI GGCC 1 cut(s) 16
BshNI GGYRCC 2 cut(s) 4, 305
BsiHKAI GWGCWC 3 cut(s) 129, 276, 516
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 330, 369, 390
BslFI GGGAC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 397
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 3 cut(s) 129, 276, 516
Bsp143I GATC 2 cut(s) 174, 492
BspACI CCGC 9 cut(s) 8, 103, 168, 181, 184, 219, 333, 348, 377
BspANI GGCC 1 cut(s) 16
BspLI GGNNCC 5 cut(s) 6, 17, 307, 337, 385
BspPI GGATC 1 cut(s) 487
BspT107I GGYRCC 2 cut(s) 4, 305
BsrFI RCCGGY 2 cut(s) 329, 368
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 2 cut(s) 329, 368
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 2 cut(s) 174, 492
BssSI CACGAG 1 cut(s) 290
Bst2BI CACGAG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 154, 199
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 352
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 2 cut(s) 51, 231
BstKTI GATC 2 cut(s) 177, 495
BstMBI GATC 2 cut(s) 174, 492
BstMWI GCNNNNNNNGC 2 cut(s) 124, 322
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 11
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 2 cut(s) 51, 231
Cac8I GCNNGC 1 cut(s) 352
Cfr10I RCCGGY 2 cut(s) 329, 368
Cfr13I GGNCC 2 cut(s) 15, 384
Csp6I GTAC 2 cut(s) 394, 438
CviAII CATG 2 cut(s) 223, 355
CviJI RGCY 8 cut(s) 16, 35, 127, 316, 325, 336, 460, 563
CviKI_1 RGCY 8 cut(s) 16, 35, 127, 316, 325, 336, 460, 563
CviQI GTAC 2 cut(s) 394, 438
DpnI GATC 2 cut(s) 176, 494
DpnII GATC 2 cut(s) 174, 492
EciI GGCGGA 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 2 cut(s) 226, 358
FaiI YATR 3 cut(s) 224, 356, 499
FaqI GGGAC 1 cut(s) 397
FatI CATG 2 cut(s) 222, 354
FauI CCCGC 1 cut(s) 110
Fnu4HI GCNGC 5 cut(s) 168, 184, 219, 334, 561
FokI GGATG 2 cut(s) 38, 218
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 5 cut(s) 168, 184, 219, 334, 561
FspBI CTAG 1 cut(s) 32
GluI GCNGC 5 cut(s) 168, 184, 219, 334, 561
HaeIII GGCC 1 cut(s) 16
HapII CCGG 3 cut(s) 330, 369, 390
Hin1II CATG 2 cut(s) 226, 358
HpaII CCGG 3 cut(s) 330, 369, 390
HphI GGTGA 6 cut(s) 13, 91, 148, 187, 319, 397
Hpy166II GTNNAC 2 cut(s) 366, 400
Hpy188I TCNGA 1 cut(s) 528
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 2 cut(s) 366, 400
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 2 cut(s) 154, 199
HpyCH4IV ACGT 2 cut(s) 285, 396
HpyCH4V TGCA 2 cut(s) 487, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 322
HpySE526I ACGT 2 cut(s) 285, 396
Hsp92II CATG 2 cut(s) 226, 358
Kzo9I GATC 2 cut(s) 174, 492
LmnI GCTCC 3 cut(s) 321, 341, 519
LpnPI CCDG 9 cut(s) 200, 335, 343, 364, 374, 382, 403, 473, 488
Lsp1109I GCAGC 1 cut(s) 572
MaeI CTAG 1 cut(s) 32
MaeII ACGT 2 cut(s) 285, 396
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 176, 494
MboI GATC 2 cut(s) 174, 492
MboII GAAGA 1 cut(s) 455
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 3 cut(s) 129, 276, 516
MmeI TCCRAC 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 3 cut(s) 330, 369, 390
MspR9I CCNGG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 124, 322
NciI CCSGG 1 cut(s) 391
NdeII GATC 2 cut(s) 174, 492
NlaIII CATG 2 cut(s) 226, 358
NlaIV GGNNCC 5 cut(s) 6, 17, 307, 337, 385
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 358
PctI GAATGC 1 cut(s) 105
PkrI GCNGC 5 cut(s) 169, 185, 220, 335, 562
Ppu21I YACGTR 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 5 cut(s) 6, 17, 307, 337, 385
PspPI GGNCC 2 cut(s) 15, 384
PsuI RGATCY 1 cut(s) 492
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 395, 439
RsaNI GTAC 2 cut(s) 394, 438
SacI GAGCTC 1 cut(s) 129
SatI GCNGC 5 cut(s) 168, 184, 219, 334, 561
Sau3AI GATC 2 cut(s) 174, 492
Sau96I GGNCC 2 cut(s) 15, 384
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 3 cut(s) 129, 276, 516
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 263, 413
SmoI CTYRAG 2 cut(s) 263, 413
SsiI CCGC 9 cut(s) 8, 103, 168, 181, 184, 219, 333, 348, 377
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 389
TaaI ACNGT 2 cut(s) 154, 199
TaiI ACGT 2 cut(s) 288, 399
TaqI TCGA 1 cut(s) 210
TauI GCSGC 4 cut(s) 170, 186, 221, 336
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 384
XceI RCATGY 1 cut(s) 358
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.