Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002052.1

Orthogroup ID

OG0031185

Physical Location & Seq

Genomic Coordinates Forward (+)

33228 .. 36053

Gene Structure 2826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgttttgcaatcctaagaggatgagtaacctgaacaaattggactttgctctattgagaacaactagctctggatatcacaggtgggttcgtgatgtccgccagcatctcaaggcagatggaatcttggatacgatggatactgttgttgatgccgggatatttgatgggtctttaggcatcatttctgtggtatctgcattgaaggttttgagtatcaatggaaaattgggagaactaaagcggtcggtaatagcatttagtgatgaagaaggagtaaagtttcagtctacattcataggaagtgctgctatagctggaattttactagtttcagcactgcaaataactgataaaagtgcaggttacgatgagaggttcccagggcattctgtaacaattccaatgtccatgcgtcatgaccctatggttgctgctgcggaagccattgtgttgttagaaagcctatgtaagcatcctcaagattctgtcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

165

Amino Acids

17.94

Weight (kDa)

6.5

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031185)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002052.1_g000010
rosa_rugosa	Rorug05G0067200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	3 cut(s)	100, 244, 440
AcsI	RAATTY	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	205
AhlI	ACTAGT	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	69, 317
AluI	AGCT	2 cut(s)	69, 317
ApeKI	GCWGC	3 cut(s)	308, 434, 437
ApoI	RAATTY	1 cut(s)	321
AsuC2I	CCSGG	1 cut(s)	157
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BbvI	GCAGC	3 cut(s)	295, 421, 424
BccI	CCATC	3 cut(s)	113, 130, 161
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	2 cut(s)	124, 133
BcnI	CCSGG	1 cut(s)	157
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	2 cut(s)	66, 329
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	353
BfuI	GTATCC	2 cut(s)	124, 133
BisI	GCNGC	3 cut(s)	309, 435, 438
BlsI	GCNGC	3 cut(s)	310, 436, 439
Bme1390I	CCNGG	2 cut(s)	157, 384
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	2 cut(s)	157, 384
BmsI	GCATC	4 cut(s)	115, 142, 189, 484
BpuEI	CTTGAG	2 cut(s)	95, 465
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	382, 383
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	382, 383
BseGI	GGATG	2 cut(s)	27, 475
BseXI	GCAGC	3 cut(s)	295, 421, 424
BsgI	GTGCAG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	388
BspACI	CCGC	3 cut(s)	100, 244, 440
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	380
BspMI	ACCTGC	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	382, 383
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	27, 475
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 443
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	155, 382
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	295, 421, 424
BsuI	GTATCC	2 cut(s)	124, 133
BtsCI	GGATG	2 cut(s)	27, 475
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	104
CciI	TCATGA	1 cut(s)	418
CseI	GACGC	1 cut(s)	404
CviAII	CATG	2 cut(s)	412, 419
CviJI	RGCY	4 cut(s)	69, 317, 446, 465
CviKI_1	RGCY	4 cut(s)	69, 317, 446, 465
DdeI	CTNAG	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	77
FaeI	CATG	2 cut(s)	415, 422
FaiI	YATR	6 cut(s)	299, 314, 413, 420, 428, 469
FatI	CATG	2 cut(s)	411, 418
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	3 cut(s)	309, 435, 438
FokI	GGATG	2 cut(s)	34, 462
Fsp4HI	GCNGC	3 cut(s)	309, 435, 438
FspBI	CTAG	2 cut(s)	66, 329
GluI	GCNGC	3 cut(s)	309, 435, 438
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	415, 422
HinfI	GANTC	2 cut(s)	123, 485
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	72, 92, 419, 482
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	2 cut(s)	199, 266
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	9, 200, 343, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 443
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	415, 422
LpnPI	CCDG	9 cut(s)	44, 57, 67, 116, 169, 303, 348, 369, 396
Lsp1109I	GCAGC	3 cut(s)	295, 421, 424
LweI	GCATC	4 cut(s)	115, 142, 189, 484
MaeI	CTAG	2 cut(s)	66, 329
MaeIII	GTNAC	3 cut(s)	26, 365, 394
MboII	GAAGA	1 cut(s)	281
MluCI	AATT	4 cut(s)	38, 227, 321, 399
MnlI	CCTC	3 cut(s)	12, 369, 489
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	157, 384
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	314, 443
NciI	CCSGG	1 cut(s)	157
NlaIII	CATG	2 cut(s)	415, 422
NlaIV	GGNNCC	1 cut(s)	380
PagI	TCATGA	1 cut(s)	418
PasI	CCCWGGG	1 cut(s)	383
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	123, 485
PkrI	GCNGC	3 cut(s)	310, 436, 439
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	188
SatI	GCNGC	3 cut(s)	309, 435, 438
ScrFI	CCNGG	2 cut(s)	157, 384
SetI	ASST	7 cut(s)	33, 71, 86, 210, 319, 367, 380
SfaNI	GCATC	4 cut(s)	115, 142, 189, 484
SfcI	CTRYAG	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	110, 480
SmoI	CTYRAG	2 cut(s)	110, 480
SpeI	ACTAGT	1 cut(s)	328
Sse9I	AATT	4 cut(s)	38, 227, 321, 399
SsiI	CCGC	3 cut(s)	100, 244, 440
SspMI	CTAG	2 cut(s)	66, 329
StyD4I	CCNGG	2 cut(s)	155, 382
TaaI	ACNGT	1 cut(s)	145
TasI	AATT	4 cut(s)	38, 227, 321, 399
TfiI	GAWTC	2 cut(s)	123, 485
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	3 cut(s)	308, 434, 437
TspDTI	ATGAA	2 cut(s)	282, 286
TspRI	CASTG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	2 cut(s)	66, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.