Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002058.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

47670 .. 50225

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002058.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgaccgtgcccttattgcgcgtaagttgcattcaagcactcaaatcaacagtagtacttggaaatctcacacatctcacccacttgaatctctcccacaactcactagatcaaagtgttggttccttcttgtccttgagtcatcttgaggtacttgatttgagctctaaccttctttatggggaactaccactttctctaccatctagtatccgaatgctggacttgtccaacaatcaattcagtggttcaattccatcttcattcttcagacaagttaggaatttaactagtttcttggttagtaacaacaccttctcaggatctatcccgcacaataacctctcgggagtacttccagaagatatctacaatgctgccaaacttgaagaaattgcaatacctctcaattcacttgatggagtcgttaatgatagaattgtgaacctcaccaaccttgcaattcttgacctccaagttggttacttgagggaagaagaagaaaatggtggagacgttaatctcaccatagaggacttcaaagctgaagatggagtgcacaaggatgctgcagactttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0043207 GO:0045087 GO:0048507 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

194

Amino Acids

21.17

Weight (kDa)

4.57

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	253, 567
AfaI	GTAC	3 cut(s)	57, 153, 354
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	5 cut(s)	35, 88, 252, 389, 541
AhlI	ACTAGT	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	2 cut(s)	165, 545
AluI	AGCT	2 cut(s)	165, 545
Alw21I	GWGCWC	2 cut(s)	167, 561
Alw26I	GTCTC	1 cut(s)	507
Alw44I	GTGCAC	1 cut(s)	557
AlwI	GGATC	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	346
ApaLI	GTGCAC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	377, 569
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	21
AsuHPI	GGTGA	3 cut(s)	70, 442, 517
AvaI	CYCGRG	1 cut(s)	346
BaeGI	GKGCMC	2 cut(s)	12, 561
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	2 cut(s)	167, 561
BbvI	GCAGC	2 cut(s)	364, 556
BccI	CCATC	4 cut(s)	211, 265, 413, 545
BciVI	GTATCC	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	507
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	3 cut(s)	107, 207, 291
BfmI	CTRYAG	1 cut(s)	570
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	378, 570
BlsI	GCNGC	2 cut(s)	379, 571
BmcAI	AGTACT	2 cut(s)	57, 354
BmeT110I	CYCGRG	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	556
BpuEI	CTTGAG	3 cut(s)	157, 167, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	333
BseSI	GKGCMC	2 cut(s)	12, 561
BseXI	GCAGC	2 cut(s)	364, 556
Bsh1236I	CGCG	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	167, 561
BsiHKCI	CYCGRG	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	507
BsmBI	CGTCTC	1 cut(s)	507
BsmI	GAATGC	2 cut(s)	30, 222
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	3 cut(s)	12, 167, 561
Bsp143I	GATC	2 cut(s)	109, 323
BspACI	CCGC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	332
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	331
BssMI	GATC	2 cut(s)	109, 323
Bst4CI	ACNGT	2 cut(s)	7, 52
BstDEI	CTNAG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	571
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	112, 326
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	2 cut(s)	109, 323
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 27
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	2 cut(s)	12, 561
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	364, 556
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	56, 152, 353
CviJI	RGCY	2 cut(s)	165, 545
CviKI_1	RGCY	2 cut(s)	165, 545
CviQI	GTAC	3 cut(s)	56, 152, 353
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	2 cut(s)	111, 325
DpnII	GATC	2 cut(s)	109, 323
Ecl136II	GAGCTC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	2 cut(s)	253, 567
Eco88I	CYCGRG	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	507
FaiI	YATR	2 cut(s)	180, 530
FauI	CCCGC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	378, 570
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	378, 570
FspBI	CTAG	3 cut(s)	107, 207, 291
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	2 cut(s)	378, 570
HhaI	GCGC	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	88, 139, 423
HphI	GGTGA	3 cut(s)	70, 442, 517
Hpy166II	GTNNAC	2 cut(s)	445, 559
Hpy188I	TCNGA	2 cut(s)	215, 272
Hpy188III	TCNNGA	5 cut(s)	146, 321, 348, 359, 467
Hpy8I	GTNNAC	2 cut(s)	445, 559
HpyAV	CCTTC	3 cut(s)	136, 182, 325
HpyCH4III	ACNGT	2 cut(s)	7, 52
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	5 cut(s)	30, 398, 461, 559, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 27
HpyF3I	CTNAG	1 cut(s)	319
HpySE526I	ACGT	1 cut(s)	516
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	109, 323
LpnPI	CCDG	3 cut(s)	206, 306, 372
Lsp1109I	GCAGC	2 cut(s)	364, 556
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	3 cut(s)	107, 207, 291
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	2 cut(s)	305, 482
MalI	GATC	2 cut(s)	111, 325
MboI	GATC	2 cut(s)	109, 323
MboII	GAAGA	8 cut(s)	252, 259, 374, 401, 506, 509, 512, 560
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	3 cut(s)	12, 167, 561
MluCI	AATT	7 cut(s)	239, 252, 283, 393, 409, 438, 462
MlyI	GAGTC	2 cut(s)	148, 432
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	7 cut(s)	142, 353, 414, 458, 482, 483, 526
MseI	TTAA	3 cut(s)	287, 429, 519
MslI	CAYNNNNRTG	1 cut(s)	564
Mva1269I	GAATGC	2 cut(s)	30, 222
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	16, 27
NdeII	GATC	2 cut(s)	109, 323
NlaIV	GGNNCC	1 cut(s)	124
PctI	GAATGC	2 cut(s)	30, 222
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	379, 571
PleI	GAGTC	2 cut(s)	147, 431
PpsI	GAGTC	2 cut(s)	147, 431
Psp124BI	GAGCTC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	3 cut(s)	57, 153, 354
RsaNI	GTAC	3 cut(s)	56, 152, 353
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	287, 429, 519
SatI	GCNGC	2 cut(s)	378, 570
Sau3AI	GATC	2 cut(s)	109, 323
ScaI	AGTACT	2 cut(s)	57, 354
SchI	GAGTC	2 cut(s)	148, 432
SduI	GDGCHC	3 cut(s)	12, 167, 561
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	570
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	3 cut(s)	136, 146, 487
SmoI	CTYRAG	3 cut(s)	136, 146, 487
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	7 cut(s)	239, 252, 283, 393, 409, 438, 462
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	3 cut(s)	107, 207, 291
SstI	GAGCTC	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	7, 52
TaiI	ACGT	1 cut(s)	519
TasI	AATT	7 cut(s)	239, 252, 283, 393, 409, 438, 462
TatI	WGTACW	2 cut(s)	55, 352
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	287, 429, 519
Tru9I	TTAA	3 cut(s)	287, 429, 519
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	2 cut(s)	377, 569
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	283
XspI	CTAG	3 cut(s)	107, 207, 291
ZrmI	AGTACT	2 cut(s)	57, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.