Rmu_sc0002061.1_g000024
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002061.1
N/A
Physical Location & Seq
Forward (+)
85102 .. 91971
6870 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 852 bp
atgccgtctaagttcatgacggagcggaggggggttcagcgccagtggctgcccatgcggcatcacctagcgtcggtggctaatgaggattcaaaggtaggatggctaatgtttgctgtgttactattacccaattcctcttcttctaagagcaccaaagtgtctgtggatttgtactacgaaaccctttgtcctgattgctctgatttcattgttaaacatctgatcaagctcttcgacaccggactcatctccgctgttgacttgaatctcgtcccctacgacaaagccaagctcggaaccaacgacaccatcacttgccagcttctggagcttctgatgctgtcttggcacggtgtgtggcggcgcgtcaacggtgatctgggggcaagccggggctcaggcggtagcctgtgttcccgtagctacttataccaacttgacgaggcgcatggcagagcgtcagcagtgatctggaggcgaaccagggctcaggcgatagcctgtttggttgtgtttctgtgggtcactcatttggcgggagttggtaccgctagttgtagcataagcgatcatgttttgactgcaacgcaacgttgccgtcgttgtcaaagtgagtcgttgcctcgggaatcacagctggcggaagtccctcagctgatgataagtggccgcactaggacctacctagcggtagcctggtgtatggcattgtggtcagcggcgactgtcttcccaggtgttgagggaggagtcttgcttgtaagatggaaagggagaagttccgatagcagagttgcgcttagcggagactatctagcttgcgagacggaaaggccgaagttccgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

283

Amino Acids

31.47

Weight (kDa)

9.15

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 56 - 108 4.2e-11 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 328
AccBSI CCGCTC 1 cut(s) 25
AccII CGCG 1 cut(s) 369
AclI AACGTT 1 cut(s) 595
AcoI YGGCCR 1 cut(s) 670
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 2 cut(s) 176, 550
AfiI CCNNNNNNNGG 2 cut(s) 73, 328
AgsI TTSAA 2 cut(s) 93, 268
AjnI CCWGG 3 cut(s) 485, 698, 736
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 8 cut(s) 232, 295, 325, 334, 426, 640, 658, 821
AluI AGCT 8 cut(s) 232, 295, 325, 334, 426, 640, 658, 821
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 2 cut(s) 804, 821
AlwNI CAGNNNCTG 2 cut(s) 49, 328
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 2 cut(s) 670, 836
ApeKI GCWGC 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 548
AspLEI GCGC 4 cut(s) 42, 369, 451, 802
AspS9I GGNCC 1 cut(s) 681
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 56, 389
AvaI CYCGRG 1 cut(s) 627
AvaII GGWCC 1 cut(s) 681
BanI GGYRCC 1 cut(s) 548
BanII GRGCYC 2 cut(s) 401, 493
BbsI GAAGAC 1 cut(s) 724
Bbv12I GWGCWC 1 cut(s) 155
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 1 cut(s) 36
BccI CCATC 3 cut(s) 96, 320, 762
BceAI ACGGC 1 cut(s) 585
BciT130I CCWGG 3 cut(s) 487, 700, 738
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 804, 821
BfaI CTAG 6 cut(s) 68, 555, 678, 689, 818, 850
BfoI RGCGCY 1 cut(s) 43
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 5 cut(s) 50, 59, 365, 673, 723
BlpI GCTNAGC 1 cut(s) 803
BlsI GCNGC 5 cut(s) 51, 60, 366, 674, 724
Bme1390I CCNGG 4 cut(s) 395, 487, 700, 738
Bme18I GGWCC 1 cut(s) 681
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 1 cut(s) 681
BmiI GGNNCC 2 cut(s) 301, 550
BmrFI CCNGG 4 cut(s) 395, 487, 700, 738
BmsI GCATC 2 cut(s) 70, 330
BpiI GAAGAC 1 cut(s) 724
BpmI CTGGAG 2 cut(s) 350, 496
Bpu10I CCTNAGC 3 cut(s) 400, 492, 654
Bpu1102I GCTNAGC 1 cut(s) 803
BpuMI CCSGG 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 394, 486, 626, 736
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 328
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 3 cut(s) 487, 700, 738
BseDI CCNNGG 4 cut(s) 394, 486, 626, 736
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 73, 328
BseMII CTCAG 3 cut(s) 414, 506, 668
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 765
BseXI GCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 672, 838
BshNI GGYRCC 1 cut(s) 548
BsiHKAI GWGCWC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 2 cut(s) 243, 394
BslFI GGGAC 2 cut(s) 260, 635
BslI CCNNNNNNNGG 2 cut(s) 73, 328
BsmAI GTCTC 2 cut(s) 804, 821
BsmBI CGTCTC 1 cut(s) 821
BsmFI GGGAC 2 cut(s) 260, 635
BsnI GGCC 2 cut(s) 672, 838
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 3 cut(s) 155, 401, 493
Bsp143I GATC 4 cut(s) 225, 379, 471, 571
Bsp1720I GCTNAGC 1 cut(s) 803
BspANI GGCC 2 cut(s) 672, 838
BspCNI CTCAG 3 cut(s) 413, 505, 667
BspFNI CGCG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 301, 550
BspQI GCTCTTC 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 4 cut(s) 394, 486, 626, 736
BssMI GATC 4 cut(s) 225, 379, 471, 571
Bst2UI CCWGG 3 cut(s) 487, 700, 738
Bst4CI ACNGT 3 cut(s) 356, 377, 730
Bst6I CTCTTC 2 cut(s) 145, 239
BstC8I GCNNGC 4 cut(s) 323, 391, 642, 823
BstDEI CTNAG 6 cut(s) 9, 147, 400, 492, 654, 803
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 4 cut(s) 42, 369, 451, 802
BstKTI GATC 4 cut(s) 228, 382, 474, 574
BstMAI GTCTC 2 cut(s) 804, 821
BstMBI GATC 4 cut(s) 225, 379, 471, 571
BstMWI GCNNNNNNNGC 7 cut(s) 46, 55, 58, 77, 331, 340, 349
BstNI CCWGG 3 cut(s) 487, 700, 738
BstSCI CCNGG 4 cut(s) 393, 485, 698, 736
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 724
BsuRI GGCC 2 cut(s) 672, 838
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 50, 474
Cac8I GCNNGC 4 cut(s) 323, 391, 642, 823
CaiI CAGNNNCTG 2 cut(s) 49, 328
CciI TCATGA 1 cut(s) 15
CfoI GCGC 4 cut(s) 42, 369, 451, 802
Cfr13I GGNCC 1 cut(s) 681
CseI GACGC 3 cut(s) 60, 358, 450
Csp6I GTAC 2 cut(s) 175, 549
CviAII CATG 4 cut(s) 16, 55, 452, 575
CviQI GTAC 2 cut(s) 175, 549
DdeI CTNAG 6 cut(s) 9, 147, 400, 492, 654, 803
DpnI GATC 4 cut(s) 227, 381, 473, 573
DpnII GATC 4 cut(s) 225, 379, 471, 571
DraIII CACNNNGTG 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 2 cut(s) 145, 239
EarI CTCTTC 2 cut(s) 145, 239
EciI GGCGGA 1 cut(s) 659
Eco24I GRGCYC 2 cut(s) 401, 493
Eco47I GGWCC 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 681
EcoRII CCWGG 3 cut(s) 485, 698, 736
EcoT38I GRGCYC 2 cut(s) 401, 493
Esp3I CGTCTC 1 cut(s) 821
FaeI CATG 4 cut(s) 19, 58, 455, 578
FaiI YATR 7 cut(s) 17, 56, 433, 453, 566, 576, 707
FaqI GGGAC 2 cut(s) 260, 635
FatI CATG 4 cut(s) 15, 54, 451, 574
FauI CCCGC 1 cut(s) 532
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 50, 59, 365, 673, 723
FokI GGATG 1 cut(s) 114
FriOI GRGCYC 2 cut(s) 401, 493
Fsp4HI GCNGC 5 cut(s) 50, 59, 365, 673, 723
FspBI CTAG 6 cut(s) 68, 555, 678, 689, 818, 850
GlaI GCGC 4 cut(s) 41, 368, 450, 801
GluI GCNGC 5 cut(s) 50, 59, 365, 673, 723
GsuI CTGGAG 2 cut(s) 350, 496
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 2 cut(s) 672, 838
HapII CCGG 2 cut(s) 243, 394
HgaI GACGC 3 cut(s) 60, 358, 450
HhaI GCGC 4 cut(s) 42, 369, 451, 802
Hin1II CATG 4 cut(s) 19, 58, 455, 578
Hin6I GCGC 4 cut(s) 40, 367, 449, 800
HinP1I GCGC 4 cut(s) 40, 367, 449, 800
HincII GTYRAC 2 cut(s) 262, 373
HindII GTYRAC 2 cut(s) 262, 373
HinfI GANTC 6 cut(s) 89, 246, 268, 617, 632, 753
HpaII CCGG 2 cut(s) 243, 394
HphI GGTGA 2 cut(s) 56, 389
Hpy166II GTNNAC 2 cut(s) 262, 373
Hpy188I TCNGA 5 cut(s) 205, 225, 299, 339, 787
Hpy188III TCNNGA 5 cut(s) 16, 194, 329, 475, 629
Hpy8I GTNNAC 2 cut(s) 262, 373
Hpy99I CGWCG 2 cut(s) 76, 606
HpyCH4III ACNGT 3 cut(s) 356, 377, 730
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 1 cut(s) 587
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 55, 58, 77, 331, 340, 349
HpyF3I CTNAG 6 cut(s) 9, 147, 400, 492, 654, 803
HpySE526I ACGT 1 cut(s) 595
Hsp92II CATG 4 cut(s) 19, 58, 455, 578
HspAI GCGC 4 cut(s) 40, 367, 449, 800
KpnI GGTACC 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 4 cut(s) 225, 379, 471, 571
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 2 cut(s) 22, 331
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 2 cut(s) 70, 330
MaeI CTAG 6 cut(s) 68, 555, 678, 689, 818, 850
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 2 cut(s) 120, 526
MalI GATC 4 cut(s) 227, 381, 473, 573
MbiI CCGCTC 1 cut(s) 25
MboI GATC 4 cut(s) 225, 379, 471, 571
MboII GAAGA 4 cut(s) 132, 135, 226, 724
MhlI GDGCHC 3 cut(s) 155, 401, 493
MluCI AATT 1 cut(s) 133
MlyI GAGTC 3 cut(s) 240, 626, 762
MnlI CCTC 9 cut(s) 21, 79, 148, 439, 471, 636, 663, 739, 743
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 4 cut(s) 257, 640, 658, 722
MspI CCGG 2 cut(s) 243, 394
MspR9I CCNGG 4 cut(s) 395, 487, 700, 738
MvaI CCWGG 3 cut(s) 487, 700, 738
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 7 cut(s) 46, 55, 58, 77, 331, 340, 349
NciI CCSGG 1 cut(s) 395
NdeII GATC 4 cut(s) 225, 379, 471, 571
NlaIII CATG 4 cut(s) 19, 58, 455, 578
NlaIV GGNNCC 2 cut(s) 301, 550
NmuCI GTSAC 1 cut(s) 526
OliI CACNNNNGTG 1 cut(s) 158
PagI TCATGA 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 4 cut(s) 279, 303, 601, 836
PfeI GAWTC 3 cut(s) 89, 268, 632
PflMI CCANNNNNTGG 1 cut(s) 328
PkrI GCNGC 5 cut(s) 51, 60, 366, 674, 724
PleI GAGTC 3 cut(s) 240, 625, 761
PpsI GAGTC 3 cut(s) 240, 625, 761
PpuMI RGGWCCY 1 cut(s) 681
Psp1406I AACGTT 1 cut(s) 595
Psp5II RGGWCCY 1 cut(s) 681
Psp6I CCWGG 3 cut(s) 485, 698, 736
PspGI CCWGG 3 cut(s) 485, 698, 736
PspN4I GGNNCC 2 cut(s) 301, 550
PspPI GGNCC 1 cut(s) 681
PspPPI RGGWCCY 1 cut(s) 681
PsrI GAACNNNNNNTAC 2 cut(s) 400, 432
PstNI CAGNNNCTG 2 cut(s) 49, 328
PvuII CAGCTG 2 cut(s) 640, 658
RsaI GTAC 2 cut(s) 176, 550
RsaNI GTAC 2 cut(s) 175, 549
RseI CAYNNNNRTG 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 5 cut(s) 50, 59, 365, 673, 723
Sau3AI GATC 4 cut(s) 225, 379, 471, 571
Sau96I GGNCC 1 cut(s) 681
SchI GAGTC 3 cut(s) 240, 626, 762
ScrFI CCNGG 4 cut(s) 395, 487, 700, 738
SduI GDGCHC 3 cut(s) 155, 401, 493
SfaNI GCATC 2 cut(s) 70, 330
SinI GGWCC 1 cut(s) 681
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 1 cut(s) 133
SspMI CTAG 6 cut(s) 68, 555, 678, 689, 818, 850
StyD4I CCNGG 4 cut(s) 393, 485, 698, 736
TaaI ACNGT 3 cut(s) 356, 377, 730
TaiI ACGT 1 cut(s) 598
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 133
TatI WGTACW 1 cut(s) 174
TauI GCSGC 4 cut(s) 61, 367, 675, 725
TfiI GAWTC 3 cut(s) 89, 268, 632
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 2 cut(s) 50, 474
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 2 cut(s) 4, 199
TspGWI ACGGA 2 cut(s) 35, 845
TspRI CASTG 2 cut(s) 50, 474
Van91I CCANNNNNTGG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 6 cut(s) 68, 555, 678, 689, 818, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.