Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002063.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

15463 .. 15876

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggtgaccactttacaacccttaagtctaccaacaacaaaactcaccatccactgctcctctaatagcaagagaagcaagaagcccaagcagcttcaccaaaagcagagcaccaagctcctctctttctcaaactcatccccagcccctctcattatctaccaaaaaccccaaacccagaccaagctccaagccctcgaggccatcatcaaggaccttgaagcctctagcgaaaacggcatagacgtcgacactgaaacctttgcttcccttttagaaacatgttacaaattagacgccatggactactgtctccgggtccacagactaatacccagaaaccttttacgtaggaatgtaggcctctcatcaaagcttcttcgtctttacgtggatagaggactggactcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK PPR PPR_2

Protein Analysis

137

Amino Acids

15.46

Weight (kDa)

9.6

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
AbsI	CCTCGAGG	1 cut(s)	197
AccI	GTMKAC	2 cut(s)	28, 249
AcyI	GRCGYC	2 cut(s)	246, 297
AflII	CTTAAG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	221
AluBI	AGCT	4 cut(s)	94, 118, 187, 376
AluI	AGCT	4 cut(s)	94, 118, 187, 376
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	201, 361
ApeKI	GCWGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	214, 319
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	16, 37, 89
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	214, 319
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	56, 212
BceAI	ACGGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	22
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	2 cut(s)	214, 319
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	214, 319
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	317
BoxI	GACNNNNGTC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	317
BsaAI	YACGTR	2 cut(s)	350, 391
BsaHI	GRCGYC	2 cut(s)	246, 297
BsaJI	CCNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	48, 137
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	2 cut(s)	49, 110
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	142
BshFI	GGCC	2 cut(s)	203, 363
BsiHKAI	GWGCWC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	203, 363
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp19I	CCATGG	1 cut(s)	300
BspANI	GGCC	2 cut(s)	203, 363
BspLI	GGNNCC	1 cut(s)	320
BspTI	CTTAAG	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	300
BssNI	GRCGYC	2 cut(s)	246, 297
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	311
BstACI	GRCGYC	2 cut(s)	246, 297
BstAFI	CTTAAG	1 cut(s)	22
BstBAI	YACGTR	2 cut(s)	350, 391
BstDSI	CCRYGG	1 cut(s)	300
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	48, 137
BstMAI	GTCTC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 91, 200, 237
BstNSI	RCATGY	1 cut(s)	285
BstPAI	GACNNNNGTC	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	315
BstSNI	TACGTA	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	203, 363
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	48, 137
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 252
Cfr13I	GGNCC	2 cut(s)	214, 319
CseI	GACGC	1 cut(s)	305
CviAII	CATG	2 cut(s)	282, 301
Eco105I	TACGTA	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	214, 319
Eco88I	CYCGRG	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	285, 304
FaiI	YATR	3 cut(s)	242, 283, 302
FatI	CATG	2 cut(s)	281, 300
FblI	GTMKAC	2 cut(s)	28, 249
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	2 cut(s)	35, 124
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	1 cut(s)	92
GsaI	CCCAGC	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	203, 363
HapII	CCGG	1 cut(s)	316
HgaI	GACGC	1 cut(s)	305
Hin1I	GRCGYC	2 cut(s)	246, 297
Hin1II	CATG	2 cut(s)	285, 304
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	3 cut(s)	16, 37, 89
Hpy166II	GTNNAC	3 cut(s)	29, 250, 322
Hpy8I	GTNNAC	3 cut(s)	29, 250, 322
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	3 cut(s)	246, 349, 390
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 91, 200, 237
HpySE526I	ACGT	3 cut(s)	246, 349, 390
Hsp92I	GRCGYC	2 cut(s)	246, 297
Hsp92II	CATG	2 cut(s)	285, 304
LmnI	GCTCC	3 cut(s)	62, 123, 192
LpnPI	CCDG	5 cut(s)	156, 191, 329, 349, 389
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	3 cut(s)	246, 349, 390
MaeIII	GTNAC	2 cut(s)	4, 284
MboII	GAAGA	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	70, 131, 159, 193, 206, 235, 374, 392
MseI	TTAA	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	4 cut(s)	75, 91, 200, 237
NciI	CCSGG	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	300
NlaIII	CATG	2 cut(s)	285, 304
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	363
PciI	ACATGT	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Ppu21I	YACGTR	2 cut(s)	350, 391
PpuMI	RGGWCCY	1 cut(s)	214
PscI	ACATGT	1 cut(s)	281
PshAI	GACNNNNGTC	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	214
PspEI	GGTNACC	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	214, 319
PspPPI	RGGWCCY	1 cut(s)	214
PspXI	VCTCGAGB	1 cut(s)	197
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	92
Sau96I	GGNCC	2 cut(s)	214, 319
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	214, 319
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	22, 197
SmoI	CTYRAG	2 cut(s)	22, 197
SnaBI	TACGTA	1 cut(s)	350
Sse9I	AATT	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	363
SspMI	CTAG	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	3 cut(s)	249, 352, 393
TaqI	TCGA	2 cut(s)	198, 249
TasI	AATT	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	2 cut(s)	59, 259
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	4
TspRI	CASTG	2 cut(s)	59, 259
Vha464I	CTTAAG	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	214, 319
XceI	RCATGY	1 cut(s)	285
XhoI	CTCGAG	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	28, 249
XspI	CTAG	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.