Rmu_sc0002082.1_g000051

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002082.1
N/A
Physical Location & Seq
Forward (+)
216156 .. 216437
282 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
atgactcgtcatatggatgattcgctccagtacgagtatatgaatgaagaagaccccagaaggatgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacgtagaagtgagatggcatagccttctcttctgtgatttcaagacagttcttgactataactcggaagcacttcgcattaaatccttaatggaattctgtggtaaaaagatcacagatgcgatgttgattgagaagactttcatgagcttattggagatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

11.2

Weight (kDa)

4.83

Isoelectric Point (pI)

58.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 2 cut(s) 189, 257
BbsI GAAGAC 2 cut(s) 57, 260
BccI CCATC 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 76
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 2 cut(s) 57, 260
BpmI CTGGAG 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 22, 69
BseNI ACTGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 228
BspHI TCATGA 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 28
BssMI GATC 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 152
BstF5I GGATG 2 cut(s) 22, 69
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 228
BstV2I GAAGAC 2 cut(s) 57, 260
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 2 cut(s) 22, 69
CciI TCATGA 1 cut(s) 261
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 262
CviJI RGCY 2 cut(s) 141, 267
CviKI_1 RGCY 2 cut(s) 141, 267
CviQI GTAC 1 cut(s) 31
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 212
FaeI CATG 1 cut(s) 265
FaiI YATR 8 cut(s) 12, 14, 39, 41, 138, 177, 263, 280
FatI CATG 1 cut(s) 261
FauNDI CATATG 1 cut(s) 12
FokI GGATG 2 cut(s) 29, 76
GsuI CTGGAG 1 cut(s) 11
Hin1II CATG 1 cut(s) 265
HinfI GANTC 3 cut(s) 4, 20, 104
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 4 cut(s) 116, 160, 170, 262
HpyAV CCTTC 2 cut(s) 54, 152
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 96, 120
HpySE526I ACGT 2 cut(s) 96, 120
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 3 cut(s) 41, 70, 129
LweI GCATC 1 cut(s) 226
MaeII ACGT 2 cut(s) 96, 120
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 5 cut(s) 59, 62, 92, 139, 265
MluCI AATT 1 cut(s) 212
MlyI GAGTC 1 cut(s) 98
MroXI GAANNNNTTC 2 cut(s) 189, 257
MseI TTAA 2 cut(s) 198, 206
MslI CAYNNNNRTG 1 cut(s) 15
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 101
PagI TCATGA 1 cut(s) 261
PdmI GAANNNNTTC 2 cut(s) 189, 257
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 198, 206
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 1 cut(s) 98
SetI ASST 3 cut(s) 99, 123, 269
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 212
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 2 cut(s) 99, 123
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 212
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 198, 206
Tru9I TTAA 2 cut(s) 198, 206
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 3 cut(s) 56, 60, 250
TspGWI ACGGA 1 cut(s) 89
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 2 cut(s) 189, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.