Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002083.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

158635 .. 159323

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggaaccacgaactctgcaactaatggagccgaccaattaccggtggactcccacaccagatcaactaagaatcctccaggagctttactatgacaaggtgcttaaaaacccaactccagagcagattcaagagatctgccttcatctgcaacaatatgggcagatcggggacaagaacgtcttcttttggttccagaacctcaaggcttgtgagaggcagaagttgagggaatttcggaacgttcgggttggtggatctctcgatctcaattttggatccactagttctactgataatggtaggtccattgatctaaactttggttccactggttctactagtactgacagatctattgatctaaattttgggtcacgtgtcggctatggtgttgatggatcgatcatggaacaacgaggagaatatcaccaggagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactacttccgagggaggtagaggctatggctggtactccggtggctgggacgacaacaatggtggttcttgcatttctcttgagcttagtctcaactcctccggaggtgctgacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

205

Amino Acids

23.04

Weight (kDa)

4.81

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	14 - 73	3.4e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	596
AclI	AACGTT	1 cut(s)	243
AclWI	GGATC	4 cut(s)	265, 273, 286, 409
AcsI	RAATTY	2 cut(s)	233, 367
AcvI	CACGTG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	346, 530
AfiI	CCNNNNNNNGG	3 cut(s)	42, 467, 540
AflIII	ACRYGT	1 cut(s)	379
AgeI	ACCGGT	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	131, 443
AhlI	ACTAGT	2 cut(s)	284, 341
AjnI	CCWGG	2 cut(s)	78, 432
AluBI	AGCT	2 cut(s)	85, 580
AluI	AGCT	2 cut(s)	85, 580
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	4 cut(s)	265, 273, 286, 409
Aor13HI	TCCGGA	1 cut(s)	596
ApoI	RAATTY	2 cut(s)	233, 367
AsiGI	ACCGGT	1 cut(s)	42
Asp700I	GAANNNNTTC	2 cut(s)	182, 447
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	422, 482
AvaII	GGWCC	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BamHI	GGATCC	1 cut(s)	278
BbrPI	CACGTG	1 cut(s)	380
BbsI	GAAGAC	2 cut(s)	175, 500
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	2 cut(s)	80, 434
BcoDI	GTCTC	1 cut(s)	590
BcuI	ACTAGT	2 cut(s)	284, 341
BfaI	CTAG	2 cut(s)	285, 342
BglII	AGATCT	2 cut(s)	135, 353
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	2 cut(s)	80, 434
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	5 cut(s)	6, 30, 194, 280, 328
BmrFI	CCNGG	2 cut(s)	80, 434
BpiI	GAAGAC	2 cut(s)	175, 500
BpmI	CTGGAG	2 cut(s)	62, 102
BpuEI	CTTGAG	2 cut(s)	188, 596
Bsa29I	ATCGAT	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	3 cut(s)	42, 533, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 467, 540
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	337
BseAI	TCCGGA	1 cut(s)	596
BseBI	CCWGG	2 cut(s)	80, 434
BseCI	ATCGAT	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	42, 467, 540
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	2 cut(s)	435, 583
BseYI	CCCAGC	1 cut(s)	540
BshTI	ACCGGT	1 cut(s)	42
BshVI	ATCGAT	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	43, 534, 597
BslFI	GGGAC	2 cut(s)	185, 557
BslI	CCNNNNNNNGG	3 cut(s)	42, 467, 540
BsmAI	GTCTC	1 cut(s)	590
BsmFI	GGGAC	2 cut(s)	185, 557
Bsp13I	TCCGGA	1 cut(s)	596
BspDI	ATCGAT	1 cut(s)	404
BspEI	TCCGGA	1 cut(s)	596
BspLI	GGNNCC	5 cut(s)	6, 30, 194, 280, 328
BspPI	GGATC	4 cut(s)	265, 273, 286, 409
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	80, 434
BstBAI	YACGTR	1 cut(s)	380
BstDEI	CTNAG	3 cut(s)	68, 581, 615
BstMAI	GTCTC	1 cut(s)	590
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNI	CCWGG	2 cut(s)	80, 434
BstSCI	CCNGG	2 cut(s)	78, 432
BstV2I	GAAGAC	2 cut(s)	175, 500
BstX2I	RGATCY	4 cut(s)	135, 257, 278, 353
BstYI	RGATCY	4 cut(s)	135, 257, 278, 353
Bsu15I	ATCGAT	1 cut(s)	404
BsuTUI	ATCGAT	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	306
ClaI	ATCGAT	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	345, 529
CspAI	ACCGGT	1 cut(s)	42
CspCI	CAANNNNNGTGG	2 cut(s)	538, 573
CviAII	CATG	5 cut(s)	409, 463, 467, 490, 610
CviJI	RGCY	9 cut(s)	31, 85, 209, 387, 519, 525, 540, 580, 614
CviKI_1	RGCY	9 cut(s)	31, 85, 209, 387, 519, 525, 540, 580, 614
CviQI	GTAC	2 cut(s)	345, 529
DdeI	CTNAG	3 cut(s)	68, 581, 615
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	306
Eco72I	CACGTG	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	78, 432
EcoT22I	ATGCAT	1 cut(s)	468
FaeI	CATG	5 cut(s)	412, 466, 470, 493, 613
FaiI	YATR	9 cut(s)	93, 159, 390, 410, 464, 468, 491, 522, 611
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	185, 557
FatI	CATG	5 cut(s)	408, 462, 466, 489, 609
FspBI	CTAG	2 cut(s)	285, 342
GsaI	CCCAGC	1 cut(s)	544
GsuI	CTGGAG	2 cut(s)	62, 102
HapII	CCGG	3 cut(s)	43, 534, 597
Hin1II	CATG	5 cut(s)	412, 466, 470, 493, 613
HinfI	GANTC	3 cut(s)	49, 72, 127
HpaII	CCGG	3 cut(s)	43, 534, 597
HphI	GGTGA	2 cut(s)	422, 482
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	240, 505
Hpy188III	TCNNGA	6 cut(s)	119, 131, 196, 263, 575, 597
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	152, 458
HpyCH4IV	ACGT	3 cut(s)	180, 243, 379
HpyCH4V	TGCA	4 cut(s)	19, 151, 466, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	3 cut(s)	68, 581, 615
HpySE526I	ACGT	3 cut(s)	180, 243, 379
Hsp92II	CATG	5 cut(s)	412, 466, 470, 493, 613
Kpn2I	TCCGGA	1 cut(s)	596
LmnI	GCTCC	2 cut(s)	28, 82
MaeI	CTAG	2 cut(s)	285, 342
MaeII	ACGT	3 cut(s)	180, 243, 379
MaeIII	GTNAC	1 cut(s)	375
MboII	GAAGA	2 cut(s)	175, 505
MflI	RGATCY	4 cut(s)	135, 257, 278, 353
MluCI	AATT	4 cut(s)	37, 233, 271, 367
MlyI	GAGTC	1 cut(s)	43
Mph1103I	ATGCAT	1 cut(s)	468
MroI	TCCGGA	1 cut(s)	596
MroXI	GAANNNNTTC	2 cut(s)	182, 447
MseI	TTAA	1 cut(s)	105
MspI	CCGG	3 cut(s)	43, 534, 597
MspR9I	CCNGG	2 cut(s)	80, 434
MvaI	CCWGG	2 cut(s)	80, 434
MwoI	GCNNNNNNNGC	1 cut(s)	611
NlaIII	CATG	5 cut(s)	412, 466, 470, 493, 613
NlaIV	GGNNCC	5 cut(s)	6, 30, 194, 280, 328
NmuCI	GTSAC	1 cut(s)	375
NsiI	ATGCAT	1 cut(s)	468
PdmI	GAANNNNTTC	2 cut(s)	182, 447
PfeI	GAWTC	2 cut(s)	72, 127
PfoI	TCCNGGA	1 cut(s)	78
PinAI	ACCGGT	1 cut(s)	42
PleI	GAGTC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	380
PmlI	CACGTG	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	380
Psp1406I	AACGTT	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	78, 432
PspCI	CACGTG	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	540
PspGI	CCWGG	2 cut(s)	78, 432
PspN4I	GGNNCC	5 cut(s)	6, 30, 194, 280, 328
PspPI	GGNCC	1 cut(s)	306
PsuI	RGATCY	4 cut(s)	135, 257, 278, 353
RsaI	GTAC	2 cut(s)	346, 530
RsaNI	GTAC	2 cut(s)	345, 529
SaqAI	TTAA	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	306
ScaI	AGTACT	1 cut(s)	346
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	80, 434
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	203, 575
SmoI	CTYRAG	2 cut(s)	203, 575
SpeI	ACTAGT	2 cut(s)	284, 341
Sse9I	AATT	4 cut(s)	37, 233, 271, 367
SspMI	CTAG	2 cut(s)	285, 342
StyD4I	CCNGG	2 cut(s)	78, 432
TaiI	ACGT	3 cut(s)	183, 246, 382
TaqI	TCGA	2 cut(s)	264, 404
TasI	AATT	4 cut(s)	37, 233, 271, 367
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	72, 127
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	2 cut(s)	134, 506
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	233, 367
XmnI	GAANNNNTTC	2 cut(s)	182, 447
XspI	CTAG	2 cut(s)	285, 342
ZrmI	AGTACT	1 cut(s)	346
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.