Rmu_sc0002093.1_g000017

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002093.1
N/A
Physical Location & Seq
Forward (+)
69028 .. 72975
3948 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1215 bp
atgactcaatgtgctagttattgcggtacaccttctgaaacagccaatgaagggagaggttttgttctacagcgagtgaaatacattattactgatgatttgaatgttcaccctcttctcacggcttctctcgtcagaaggataattcttggagctaattctcagcatgttgaagaggttaccgtgaacgtttcccataagaagctggccggtggtacaattcttgtacatatcgtattggcattcccatacaaaactatgacaaagccctttactgatcttggagagtcacagggtaggaaagttctctttgctgaagcgagcaaggaagttgtcgattttctgttcactctcctgtctttgcctgttggcactgtcattaggctcctcaccaagaatggcatggtgggttgcttgggcaagctttacgagagcgtagaagaacttaatgacacatacttgcaacccaatctcaacaaggactccctgctgaaaccaaagtcaacagtttctggtgctaatattcttcacttaacctacagtgactcaaatgctaagaagttctatatttgttcgtcttgcaatcgcaatatttccaatagctctgcagttatttgtccacggtgcagatacaaccataacatatccaccgaggtaacttacgtttctccaccagcagctactggagtagcgtccagcgaggaaggatatgttaagggtgttgttacatacatggtaatggataatttggaagtgaaacctatgtctactatttcaagcataactgtgcttaacaagttcaatgtcagggaggttggtgcccttgaagagaaggtggttaatcttggcatggaagagggcttgaaacttttgaaggcatctttggagtgcaatgctgttctcaccaaagtgtttctggggaaactttacgagagcgttgaaaatctcaacgacacgtacatgcagccaaatctcaagaaggatgtccttctaaaacctagggcactagttggtggttctgataatgtttttcttcctttgttgaccaacaatgaatcaaatgctgagaagttttacgtgtgtaagcatcaagctgaggatacccttgtttggctccaaaaccagtctggttgcaaacagtctcttttgagcttgtgcggacgtgccagcaccgtggggtgcagtcatcggggagtccctttacctgacttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

404

Amino Acids

44.28

Weight (kDa)

8.16

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 99 - 307 7.3e-42 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 818
AccI GTMKAC 1 cut(s) 767
AciI CCGC 2 cut(s) 24, 1158
AclI AACGTT 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 4 cut(s) 28, 217, 228, 959
AfiI CCNNNNNNNGG 2 cut(s) 51, 1110
AflIII ACRYGT 2 cut(s) 954, 1077
AgsI TTSAA 8 cut(s) 103, 173, 777, 802, 827, 865, 874, 941
AhlI ACTAGT 1 cut(s) 1006
AjiI CACGTC 1 cut(s) 1163
AjuI GAANNNNNNNTTGG 2 cut(s) 866, 898
AleI CACNNNNGTG 1 cut(s) 908
AluBI AGCT 7 cut(s) 155, 205, 424, 603, 680, 1094, 1152
AluI AGCT 7 cut(s) 155, 205, 424, 603, 680, 1094, 1152
Alw26I GTCTC 1 cut(s) 1146
AlwNI CAGNNNCTG 2 cut(s) 512, 683
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 677, 964
AspA2I CCTAGG 1 cut(s) 998
AsuHPI GGTGA 3 cut(s) 101, 382, 895
AvrII CCTAGG 1 cut(s) 998
BaeGI GKGCMC 2 cut(s) 823, 1006
BaeI ACNNNNGTAYC 2 cut(s) 1092, 1125
BanI GGYRCC 1 cut(s) 818
BbvCI CCTCAGC 1 cut(s) 1095
BbvI GCAGC 2 cut(s) 689, 976
BceAI ACGGC 1 cut(s) 138
BciVI GTATCC 1 cut(s) 1093
BcoDI GTCTC 1 cut(s) 1146
BcuI ACTAGT 1 cut(s) 1006
BfaI CTAG 3 cut(s) 15, 999, 1007
BfmI CTRYAG 3 cut(s) 68, 538, 606
BfuI GTATCC 1 cut(s) 1093
BisI GCNGC 2 cut(s) 678, 965
BlnI CCTAGG 1 cut(s) 998
BlsI GCNGC 2 cut(s) 679, 966
BmgBI CACGTC 1 cut(s) 1163
BmiI GGNNCC 3 cut(s) 386, 820, 1115
BmsI GCATC 2 cut(s) 887, 1096
BpmI CTGGAG 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 1095
BpuEI CTTGAG 1 cut(s) 959
BsaAI YACGTR 2 cut(s) 957, 1078
BsaJI CCNNGG 4 cut(s) 620, 651, 998, 1173
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 1110
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 688, 1123
Bse3DI GCAATG 1 cut(s) 898
BseDI CCNNGG 4 cut(s) 620, 651, 998, 1173
BseGI GGATG 1 cut(s) 988
BseLI CCNNNNNNNGG 2 cut(s) 51, 1110
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 3 cut(s) 176, 1056, 1086
BseNI ACTGG 2 cut(s) 688, 1123
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 2 cut(s) 823, 1006
BseXI GCAGC 2 cut(s) 689, 976
BsgI GTGCAG 2 cut(s) 646, 1201
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 818
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 1181
BslI CCNNNNNNNGG 2 cut(s) 51, 1110
BsmAI GTCTC 1 cut(s) 1146
BsmFI GGGAC 1 cut(s) 1181
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 823, 1006
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 2 cut(s) 24, 1158
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 3 cut(s) 175, 1057, 1087
BspLI GGNNCC 3 cut(s) 386, 820, 1115
BspMAI CTGCAG 1 cut(s) 610
BspT107I GGYRCC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 226
BsrI ACTGG 2 cut(s) 688, 1123
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 4 cut(s) 620, 651, 998, 1173
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 998
Bst4CI ACNGT 8 cut(s) 184, 376, 508, 542, 624, 787, 1140, 1174
Bst6I CTCTTC 4 cut(s) 120, 168, 822, 849
BstAUI TGTACA 1 cut(s) 226
BstBAI YACGTR 2 cut(s) 957, 1078
BstC8I GCNNGC 4 cut(s) 207, 322, 422, 1168
BstDEI CTNAG 4 cut(s) 162, 555, 1065, 1095
BstDSI CCRYGG 2 cut(s) 620, 1173
BstEII GGTNACC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 988
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 1146
BstMBI GATC 1 cut(s) 277
BstNSI RCATGY 2 cut(s) 170, 964
BstPI GGTNACC 1 cut(s) 178
BstSFI CTRYAG 3 cut(s) 68, 538, 606
BstSLI GKGCMC 2 cut(s) 823, 1006
BstV1I GCAGC 2 cut(s) 689, 976
BstXI CCANNNNNNTGG 1 cut(s) 1174
BsuI GTATCC 1 cut(s) 1093
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 2 cut(s) 620, 1173
BtrI CACGTC 1 cut(s) 1163
BtsCI GGATG 1 cut(s) 988
BtsIMutI CAGTG 2 cut(s) 372, 547
Cac8I GCNNGC 4 cut(s) 207, 322, 422, 1168
CaiI CAGNNNCTG 2 cut(s) 512, 683
Cfr10I RCCGGY 1 cut(s) 209
CseI GACGC 1 cut(s) 681
Csp6I GTAC 4 cut(s) 27, 216, 227, 958
CviAII CATG 5 cut(s) 167, 403, 733, 850, 961
CviQI GTAC 4 cut(s) 27, 216, 227, 958
DdeI CTNAG 4 cut(s) 162, 555, 1065, 1095
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 4 cut(s) 120, 168, 822, 849
EarI CTCTTC 4 cut(s) 120, 168, 822, 849
Eco130I CCWWGG 1 cut(s) 998
Eco57I CTGAAG 1 cut(s) 336
Eco91I GGTNACC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 998
ErhI CCWWGG 1 cut(s) 998
FaeI CATG 5 cut(s) 170, 406, 736, 853, 964
FaqI GGGAC 1 cut(s) 1181
FatI CATG 5 cut(s) 166, 402, 732, 849, 960
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 2 cut(s) 678, 965
FokI GGATG 1 cut(s) 995
Fsp4HI GCNGC 2 cut(s) 678, 965
FspBI CTAG 3 cut(s) 15, 999, 1007
GluI GCNGC 2 cut(s) 678, 965
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 681
Hin1II CATG 5 cut(s) 170, 406, 736, 853, 964
HincII GTYRAC 2 cut(s) 504, 1044
HindII GTYRAC 2 cut(s) 504, 1044
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 6 cut(s) 4, 287, 482, 545, 1055, 1194
HpaII CCGG 1 cut(s) 210
HphI GGTGA 3 cut(s) 101, 382, 895
Hpy166II GTNNAC 8 cut(s) 29, 109, 187, 348, 504, 620, 768, 1044
Hpy188I TCNGA 4 cut(s) 37, 137, 1021, 1214
Hpy188III TCNNGA 1 cut(s) 976
Hpy8I GTNNAC 8 cut(s) 29, 109, 187, 348, 504, 620, 768, 1044
HpyAV CCTTC 8 cut(s) 42, 44, 132, 698, 826, 868, 973, 998
HpyCH4III ACNGT 8 cut(s) 184, 376, 508, 542, 624, 787, 1140, 1174
HpyCH4IV ACGT 5 cut(s) 189, 663, 956, 1077, 1162
HpyCH4V TGCA 8 cut(s) 463, 582, 608, 627, 891, 964, 1134, 1182
HpyF3I CTNAG 4 cut(s) 162, 555, 1065, 1095
HpySE526I ACGT 5 cut(s) 189, 663, 956, 1077, 1162
Hsp92II CATG 5 cut(s) 170, 406, 736, 853, 964
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 3 cut(s) 152, 390, 1119
Lsp1109I GCAGC 2 cut(s) 689, 976
LweI GCATC 2 cut(s) 887, 1096
MaeI CTAG 3 cut(s) 15, 999, 1007
MaeII ACGT 5 cut(s) 189, 663, 956, 1077, 1162
MaeIII GTNAC 5 cut(s) 178, 288, 542, 655, 724
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 7 cut(s) 107, 185, 452, 518, 839, 866, 1025
MhlI GDGCHC 2 cut(s) 823, 1006
MluCI AATT 4 cut(s) 144, 157, 219, 745
MlyI GAGTC 4 cut(s) 296, 476, 539, 1203
MnlI CCTC 9 cut(s) 50, 123, 169, 398, 646, 694, 805, 850, 1090
MseI TTAA 5 cut(s) 447, 533, 714, 792, 840
MslI CAYNNNNRTG 4 cut(s) 737, 785, 908, 959
MspI CCGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 242
NdeII GATC 1 cut(s) 277
NlaIII CATG 5 cut(s) 170, 406, 736, 853, 964
NlaIV GGNNCC 3 cut(s) 386, 820, 1115
NmuCI GTSAC 2 cut(s) 288, 542
NspI RCATGY 2 cut(s) 170, 964
OliI CACNNNNGTG 1 cut(s) 908
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 1055
PkrI GCNGC 2 cut(s) 679, 966
PleI GAGTC 4 cut(s) 295, 476, 539, 1202
PpsI GAGTC 4 cut(s) 295, 476, 539, 1202
Ppu21I YACGTR 2 cut(s) 957, 1078
Psp1406I AACGTT 1 cut(s) 189
PspEI GGTNACC 1 cut(s) 178
PspN4I GGNNCC 3 cut(s) 386, 820, 1115
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 2 cut(s) 512, 683
RsaI GTAC 4 cut(s) 28, 217, 228, 959
RsaNI GTAC 4 cut(s) 27, 216, 227, 958
RseI CAYNNNNRTG 4 cut(s) 737, 785, 908, 959
SaqAI TTAA 5 cut(s) 447, 533, 714, 792, 840
SatI GCNGC 2 cut(s) 678, 965
Sau3AI GATC 1 cut(s) 277
SchI GAGTC 4 cut(s) 296, 476, 539, 1203
SduI GDGCHC 2 cut(s) 823, 1006
SfaNI GCATC 2 cut(s) 887, 1096
SfcI CTRYAG 3 cut(s) 68, 538, 606
SmiMI CAYNNNNRTG 4 cut(s) 737, 785, 908, 959
SmlI CTYRAG 1 cut(s) 974
SmoI CTYRAG 1 cut(s) 974
SpeI ACTAGT 1 cut(s) 1006
Sse9I AATT 4 cut(s) 144, 157, 219, 745
SsiI CCGC 2 cut(s) 24, 1158
SspI AATATT 2 cut(s) 523, 592
SspMI CTAG 3 cut(s) 15, 999, 1007
StyI CCWWGG 1 cut(s) 998
TaaI ACNGT 8 cut(s) 184, 376, 508, 542, 624, 787, 1140, 1174
TaiI ACGT 5 cut(s) 192, 666, 959, 1080, 1165
TaqI TCGA 1 cut(s) 336
TasI AATT 4 cut(s) 144, 157, 219, 745
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 1 cut(s) 1055
Tru1I TTAA 5 cut(s) 447, 533, 714, 792, 840
Tru9I TTAA 5 cut(s) 447, 533, 714, 792, 840
TscAI CASTG 2 cut(s) 379, 547
TseFI GTSAC 2 cut(s) 288, 542
TseI GCWGC 2 cut(s) 677, 964
Tsp45I GTSAC 2 cut(s) 288, 542
TspDTI ATGAA 2 cut(s) 63, 1068
TspRI CASTG 2 cut(s) 379, 547
XceI RCATGY 2 cut(s) 170, 964
XcmI CCANNNNNNNNNTGG 3 cut(s) 400, 913, 1124
XmaJI CCTAGG 1 cut(s) 998
XmiI GTMKAC 1 cut(s) 767
XspI CTAG 3 cut(s) 15, 999, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.