Rmu_sc0002093.1_g000023

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002093.1
N/A
Physical Location & Seq
Forward (+)
88034 .. 89598
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 846 bp
atggatatcctggtcaaaccgaatgcaccagttgctggacctaacatcctcaagttggccgacaacgttgaatcaagtgctcgaaaggagctctacttgtgctgttattcaaataattacactaaatcccacccatacgtgactgaaaaccccaatgaaaaatgtccatcgtgttcagaccacatgaacctacgaactacttatgtcggtcagccgactaccacggaagcaacttctggtgccggcgctgctggatatgtgaaaggcgttgtaccatacatgataatggatgatctggaggtcagcccatgtccaccatttgaagcatcactatgcttagcaggttcaatgtcaaggacgttggggcccttgaagagaaggttgttgaacttggcatggataaggctacggcggcggcgtggggctggccgtagggaggccggaggcgtcccatacctcttcttagcgacgttcgaggtcggaggaggtcaggcttgccggtttctgggcagccaactcacctgcagttgcaggttctgtgcagcactgcagaaccgtcgccggcgactccatcggaccgcatacccctccgcacgacccccagccaactttcaggaggcggggcttgctggactaaggtcaagggtcagacagactggtctgcagtctggtggagtcaccggcaacctggttgcagcgctgcccaaaacgttgcagttgcaggtgaggtcgctgtccaaaaccagcaacatcgatcgctgcccagaagggtctgggatcctctggcctccgtccggcaagccccgccgcctgaaaactgctgcagcagctccgttcgtactttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

281

Amino Acids

30.45

Weight (kDa)

9.98

Isoelectric Point (pI)

70.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 530, 712
AasI GACNNNNNNGTC 1 cut(s) 657
Acc36I ACCTGC 4 cut(s) 332, 522, 530, 712
AccB1I GGYRCC 1 cut(s) 239
AccB7I CCANNNNNTGG 1 cut(s) 35
AciI CCGC 7 cut(s) 412, 415, 579, 591, 620, 805, 808
AclI AACGTT 2 cut(s) 66, 710
AclWI GGATC 2 cut(s) 772, 785
AcoI YGGCCR 2 cut(s) 57, 427
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 2 cut(s) 273, 840
AfeI AGCGCT 1 cut(s) 699
AfiI CCNNNNNNNGG 5 cut(s) 35, 55, 436, 505, 794
AgsI TTSAA 6 cut(s) 71, 111, 323, 348, 373, 388
AjnI CCWGG 2 cut(s) 9, 687
AluBI AGCT 2 cut(s) 91, 830
AluI AGCT 2 cut(s) 91, 830
Alw21I GWGCWC 2 cut(s) 82, 93
AlwI GGATC 2 cut(s) 772, 785
AlwNI CAGNNNCTG 2 cut(s) 35, 537
Aor51HI AGCGCT 1 cut(s) 699
AoxI GGCC 5 cut(s) 57, 365, 427, 438, 785
ApaI GGGCCC 1 cut(s) 369
ApeKI GCWGC 9 cut(s) 248, 510, 542, 695, 700, 759, 821, 824, 827
AspLEI GCGC 2 cut(s) 248, 700
AspS9I GGNCC 4 cut(s) 38, 365, 366, 576
AsuHPI GGTGA 3 cut(s) 511, 670, 736
AvaII GGWCC 2 cut(s) 38, 576
BaeGI GKGCMC 1 cut(s) 369
BamHI GGATCC 1 cut(s) 777
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 2 cut(s) 93, 369
Bbv12I GWGCWC 2 cut(s) 82, 93
BbvI GCAGC 9 cut(s) 235, 522, 554, 687, 707, 746, 808, 836, 839
BccI CCATC 2 cut(s) 175, 579
BceAI ACGGC 2 cut(s) 414, 425
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 2 cut(s) 11, 689
BfmI CTRYAG 4 cut(s) 523, 548, 662, 822
BfoI RGCGCY 2 cut(s) 249, 701
BfuAI ACCTGC 4 cut(s) 332, 522, 530, 712
BlpI GCTNAGC 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 11, 689
Bme18I GGWCC 2 cut(s) 38, 576
BmgT120I GGNCC 4 cut(s) 38, 365, 366, 576
BmiI GGNNCC 4 cut(s) 241, 366, 367, 779
BmrFI CCNGG 2 cut(s) 11, 689
BmsI GCATC 1 cut(s) 335
BoxI GACNNNNGTC 1 cut(s) 637
BpmI CTGGAG 1 cut(s) 317
Bpu1102I GCTNAGC 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 753
BsaAI YACGTR 1 cut(s) 139
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 55, 436, 505, 794
Bse118I RCCGGY 4 cut(s) 242, 498, 561, 680
Bse1I ACTGG 2 cut(s) 29, 661
BseBI CCWGG 2 cut(s) 11, 689
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 45, 295
BseLI CCNNNNNNNGG 5 cut(s) 35, 55, 436, 505, 794
BseNI ACTGG 2 cut(s) 29, 661
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 9 cut(s) 235, 522, 554, 687, 707, 746, 808, 836, 839
BseYI CCCAGC 1 cut(s) 601
BsgI GTGCAG 1 cut(s) 561
Bsh1285I CGRYCG 1 cut(s) 757
BshFI GGCC 5 cut(s) 59, 367, 429, 440, 787
BshNI GGYRCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 753
BsiEI CGRYCG 1 cut(s) 757
BsiHKAI GWGCWC 2 cut(s) 82, 93
BsiSI CCGG 6 cut(s) 243, 441, 499, 562, 681, 795
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 5 cut(s) 35, 55, 436, 505, 794
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 5 cut(s) 59, 367, 429, 440, 787
Bsp120I GGGCCC 1 cut(s) 365
Bsp1286I GDGCHC 3 cut(s) 82, 93, 369
Bsp143I GATC 3 cut(s) 292, 754, 777
Bsp1720I GCTNAGC 1 cut(s) 337
BspACI CCGC 7 cut(s) 412, 415, 579, 591, 620, 805, 808
BspANI GGCC 5 cut(s) 59, 367, 429, 440, 787
BspDI ATCGAT 1 cut(s) 753
BspLI GGNNCC 4 cut(s) 241, 366, 367, 779
BspMAI CTGCAG 4 cut(s) 527, 552, 666, 826
BspMI ACCTGC 4 cut(s) 332, 522, 530, 712
BspPI GGATC 2 cut(s) 772, 785
BspT107I GGYRCC 1 cut(s) 239
BsrFI RCCGGY 4 cut(s) 242, 498, 561, 680
BsrI ACTGG 2 cut(s) 29, 661
BssAI RCCGGY 4 cut(s) 242, 498, 561, 680
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 292, 754, 777
BssNI GRCGYC 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 11, 689
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 2 cut(s) 368, 464
BstACI GRCGYC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 6 cut(s) 244, 427, 496, 563, 627, 800
BstDEI CTNAG 3 cut(s) 337, 463, 635
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 45, 295
BstH2I RGCGCY 2 cut(s) 249, 701
BstHHI GCGC 2 cut(s) 248, 700
BstKTI GATC 3 cut(s) 295, 757, 780
BstMBI GATC 3 cut(s) 292, 754, 777
BstMCI CGRYCG 1 cut(s) 757
BstMWI GCNNNNNNNGC 6 cut(s) 32, 248, 412, 626, 804, 827
BstNI CCWGG 2 cut(s) 11, 689
BstPAI GACNNNNGTC 1 cut(s) 637
BstSCI CCNGG 2 cut(s) 9, 687
BstSFI CTRYAG 4 cut(s) 523, 548, 662, 822
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 9 cut(s) 235, 522, 554, 687, 707, 746, 808, 836, 839
BstX2I RGATCY 1 cut(s) 777
BstYI RGATCY 1 cut(s) 777
Bsu15I ATCGAT 1 cut(s) 753
BsuRI GGCC 5 cut(s) 59, 367, 429, 440, 787
BsuTUI ATCGAT 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 45, 295
BtsI GCAGTG 1 cut(s) 545
BtsIMutI CAGTG 1 cut(s) 545
BveI ACCTGC 4 cut(s) 332, 522, 530, 712
Cac8I GCNNGC 6 cut(s) 244, 427, 496, 563, 627, 800
CaiI CAGNNNCTG 2 cut(s) 35, 537
CfoI GCGC 2 cut(s) 248, 700
Cfr10I RCCGGY 4 cut(s) 242, 498, 561, 680
Cfr13I GGNCC 4 cut(s) 38, 365, 366, 576
ClaI ATCGAT 1 cut(s) 753
CpoI CGGWCCG 1 cut(s) 576
CseI GACGC 1 cut(s) 436
CsiI ACCWGGT 1 cut(s) 687
Csp6I GTAC 2 cut(s) 272, 839
CspI CGGWCCG 1 cut(s) 576
CviAII CATG 4 cut(s) 184, 280, 309, 396
CviQI GTAC 2 cut(s) 272, 839
DdeI CTNAG 3 cut(s) 337, 463, 635
DpnI GATC 3 cut(s) 294, 756, 779
DpnII GATC 3 cut(s) 292, 754, 777
DrdI GACNNNNNNGTC 1 cut(s) 657
DseDI GACNNNNNNGTC 1 cut(s) 657
EaeI YGGCCR 2 cut(s) 57, 427
Eam1104I CTCTTC 2 cut(s) 368, 464
EarI CTCTTC 2 cut(s) 368, 464
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 93, 369
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 2 cut(s) 38, 576
Eco47III AGCGCT 1 cut(s) 699
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoO109I RGGNCCY 2 cut(s) 365, 366
EcoRII CCWGG 2 cut(s) 9, 687
EcoRV GATATC 1 cut(s) 7
EcoT38I GRGCYC 2 cut(s) 93, 369
FaeI CATG 4 cut(s) 187, 283, 312, 399
FaqI GGGAC 1 cut(s) 434
FatI CATG 4 cut(s) 183, 279, 308, 395
FauI CCCGC 2 cut(s) 613, 812
FokI GGATG 2 cut(s) 32, 302
FriOI GRGCYC 2 cut(s) 93, 369
GlaI GCGC 2 cut(s) 247, 699
GsaI CCCAGC 1 cut(s) 605
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 2 cut(s) 249, 701
HaeIII GGCC 5 cut(s) 59, 367, 429, 440, 787
HapII CCGG 6 cut(s) 243, 441, 499, 562, 681, 795
HgaI GACGC 1 cut(s) 436
HhaI GCGC 2 cut(s) 248, 700
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 4 cut(s) 187, 283, 312, 399
Hin6I GCGC 2 cut(s) 246, 698
HinP1I GCGC 2 cut(s) 246, 698
HinfI GANTC 3 cut(s) 71, 567, 675
HpaII CCGG 6 cut(s) 243, 441, 499, 562, 681, 795
HphI GGTGA 3 cut(s) 511, 670, 736
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 4 cut(s) 178, 482, 576, 650
Hpy188III TCNNGA 2 cut(s) 296, 614
Hpy8I GTNNAC 1 cut(s) 314
Hpy99I CGWCG 2 cut(s) 472, 561
HpyAV CCTTC 2 cut(s) 372, 761
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 5 cut(s) 66, 138, 359, 470, 710
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 248, 412, 626, 804, 827
HpyF3I CTNAG 3 cut(s) 337, 463, 635
HpySE526I ACGT 5 cut(s) 66, 138, 359, 470, 710
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 4 cut(s) 187, 283, 312, 399
HspAI GCGC 2 cut(s) 246, 698
KroI GCCGGC 2 cut(s) 242, 561
KroNI GCCGGC 2 cut(s) 244, 563
Kzo9I GATC 3 cut(s) 292, 754, 777
LmnI GCTCC 2 cut(s) 88, 835
Lsp1109I GCAGC 9 cut(s) 235, 522, 554, 687, 707, 746, 808, 836, 839
LweI GCATC 1 cut(s) 335
MabI ACCWGGT 1 cut(s) 687
MaeII ACGT 5 cut(s) 66, 138, 359, 470, 710
MaeIII GTNAC 2 cut(s) 139, 676
MalI GATC 3 cut(s) 294, 756, 779
MboI GATC 3 cut(s) 292, 754, 777
MboII GAAGA 2 cut(s) 385, 451
MflI RGATCY 1 cut(s) 777
MhlI GDGCHC 3 cut(s) 82, 93, 369
MluCI AATT 1 cut(s) 115
MlyI GAGTC 2 cut(s) 561, 684
MmeI TCCRAC 1 cut(s) 460
MreI CGCCGGCG 1 cut(s) 561
MroNI GCCGGC 2 cut(s) 242, 561
MslI CAYNNNNRTG 2 cut(s) 284, 331
MspI CCGG 6 cut(s) 243, 441, 499, 562, 681, 795
MspR9I CCNGG 2 cut(s) 11, 689
Mva1269I GAATGC 1 cut(s) 28
MvaI CCWGG 2 cut(s) 11, 689
MwoI GCNNNNNNNGC 6 cut(s) 32, 248, 412, 626, 804, 827
NaeI GCCGGC 2 cut(s) 244, 563
NdeII GATC 3 cut(s) 292, 754, 777
NgoMIV GCCGGC 2 cut(s) 242, 561
NlaIII CATG 4 cut(s) 187, 283, 312, 399
NlaIV GGNNCC 4 cut(s) 241, 366, 367, 779
NmuCI GTSAC 2 cut(s) 139, 676
PaqCI CACCTGC 2 cut(s) 530, 712
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PctI GAATGC 1 cut(s) 28
PdiI GCCGGC 2 cut(s) 244, 563
PfeI GAWTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 35
Ple19I CGATCG 1 cut(s) 757
PleI GAGTC 2 cut(s) 561, 683
PpsI GAGTC 2 cut(s) 561, 683
Ppu21I YACGTR 1 cut(s) 139
PshAI GACNNNNGTC 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 93
Psp1406I AACGTT 2 cut(s) 66, 710
Psp6I CCWGG 2 cut(s) 9, 687
PspFI CCCAGC 1 cut(s) 601
PspGI CCWGG 2 cut(s) 9, 687
PspN4I GGNNCC 4 cut(s) 241, 366, 367, 779
PspOMI GGGCCC 1 cut(s) 365
PspPI GGNCC 4 cut(s) 38, 365, 366, 576
PstI CTGCAG 4 cut(s) 527, 552, 666, 826
PstNI CAGNNNCTG 2 cut(s) 35, 537
PsuI RGATCY 1 cut(s) 777
PvuI CGATCG 1 cut(s) 757
RsaI GTAC 2 cut(s) 273, 840
RsaNI GTAC 2 cut(s) 272, 839
RseI CAYNNNNRTG 2 cut(s) 284, 331
Rsr2I CGGWCCG 1 cut(s) 576
RsrII CGGWCCG 1 cut(s) 576
SacI GAGCTC 1 cut(s) 93
Sau3AI GATC 3 cut(s) 292, 754, 777
Sau96I GGNCC 4 cut(s) 38, 365, 366, 576
SchI GAGTC 2 cut(s) 561, 684
ScrFI CCNGG 2 cut(s) 11, 689
SduI GDGCHC 3 cut(s) 82, 93, 369
SexAI ACCWGGT 1 cut(s) 687
SfaNI GCATC 1 cut(s) 335
SfcI CTRYAG 4 cut(s) 523, 548, 662, 822
SgrAI CRCCGGYG 1 cut(s) 561
SinI GGWCC 2 cut(s) 38, 576
SmiMI CAYNNNNRTG 2 cut(s) 284, 331
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 1 cut(s) 115
SsiI CCGC 7 cut(s) 412, 415, 579, 591, 620, 805, 808
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 9, 687
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 5 cut(s) 69, 141, 362, 473, 713
TaqI TCGA 3 cut(s) 82, 474, 753
TaqII GACCGA 1 cut(s) 197
TasI AATT 1 cut(s) 115
TauI GCSGC 3 cut(s) 415, 418, 810
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 2 cut(s) 139, 676
TseI GCWGC 9 cut(s) 248, 510, 542, 695, 700, 759, 821, 824, 827
Tsp45I GTSAC 2 cut(s) 139, 676
TspDTI ATGAA 2 cut(s) 171, 200
TspGWI ACGGA 3 cut(s) 239, 780, 822
TspRI CASTG 1 cut(s) 552
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 2 cut(s) 38, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.