Rmu_sc0002094.1_g000010

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002094.1
N/A
Physical Location & Seq
Reverse (-)
58776 .. 59102
327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atgcctgatgcgtttactgatatcgtaaaagtgacaagatcacatataatagctgtaaatgtgcctgcaaggttagaagtccctagcaaggggcacggtgccgcagatagaggcactgcaaccacacttagtagaggtgtggttgaggccgtggctccccagaggaagagggggaagccacttggttcgattgacactcacccaaggaagaagaaggcgagtaaggcacaaaccaatcatcaatgtatagaatccctctcttatgagattgtctctgattatagttatgtccatgaatcaaatactggaggacgctccgatgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

11.65

Weight (kDa)

9.61

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 88, 89
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 277
AoxI GGCC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 100, 156
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 150, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 89
Bse1I ACTGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 150, 203
BseLI CCNNNNNNNGG 2 cut(s) 88, 89
BseNI ACTGG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 96
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 98
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 88, 89
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 100, 156
BspT107I GGYRCC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 150, 203
BssMI GATC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 150
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 66
CseI GACGC 1 cut(s) 321
CviAII CATG 1 cut(s) 293
CviJI RGCY 4 cut(s) 53, 149, 155, 178
CviKI_1 RGCY 4 cut(s) 53, 149, 155, 178
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 203
Eco32I GATATC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 1 cut(s) 296
FaiI YATR 7 cut(s) 45, 47, 248, 264, 282, 288, 294
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 1 cut(s) 149
HgaI GACGC 1 cut(s) 321
Hin1II CATG 1 cut(s) 296
HinfI GANTC 2 cut(s) 251, 296
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 277, 319
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 68, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 2 cut(s) 160, 320
LpnPI CCDG 4 cut(s) 18, 78, 173, 291
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 3 cut(s) 178, 220, 223
MhlI GDGCHC 1 cut(s) 96
MnlI CCTC 7 cut(s) 104, 128, 139, 156, 162, 266, 302
MseI TTAA 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 1 cut(s) 38
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 2 cut(s) 100, 156
NmuCI GTSAC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 251, 296
PkrI GCNGC 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 100, 156
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 38
SduI GDGCHC 1 cut(s) 96
SetI ASST 3 cut(s) 55, 74, 139
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 188
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 2 cut(s) 251, 296
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 1 cut(s) 121
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.