Rmu_sc0002111.1_g000037

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002111.1
N/A
Physical Location & Seq
Reverse (-)
200203 .. 201407
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
atgggtgtcttcacttacgaatctgagttcacctctgtcatcccaccagctaggctgttcaaggcctttgtccttgacgccgataaccatgggcagatccaagtagaagcttgggcgggctggagcccatccgtcactgccaataacctcattcccaagattgctccccaagcagttaagagtaccgagattcttgaaggtgatggaggagttggcaccatcaagaagatcaacctcggtgaaggaagtgaatacagctatgtgaagcaccagattgacggaattgacaaagacaactttgtctacaaatacagcatgattgagggagacgctatatctgacaaaatcgagaagatctcctatgagactaagttggtagcatcttccgatggaggctccgtcatcaagagcaccagtaactaccacacaaagcgtgacgtggagatcaaggaagagcatgtcaaggctggaaaagaaagagccgctggtctattcaagatcatcgagagccactttctagcaaaaccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

176

Amino Acids

19.32

Weight (kDa)

5.75

Isoelectric Point (pI)

24.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 44 - 174 5.6e-21 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 303
AciI CCGC 2 cut(s) 116, 483
AclWI GGATC 1 cut(s) 91
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 3 cut(s) 61, 197, 496
AjiI CACGTC 1 cut(s) 439
AluBI AGCT 3 cut(s) 50, 110, 258
AluI AGCT 3 cut(s) 50, 110, 258
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 2 cut(s) 321, 359
AlwI GGATC 1 cut(s) 91
AoxI GGCC 1 cut(s) 63
AsuHPI GGTGA 3 cut(s) 22, 212, 251
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 413
BccI CCATC 4 cut(s) 136, 197, 227, 383
BcoDI GTCTC 2 cut(s) 321, 359
BfaI CTAG 2 cut(s) 51, 518
BglII AGATCT 1 cut(s) 354
BisI GCNGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 484
BmgBI CACGTC 1 cut(s) 439
BmiI GGNNCC 3 cut(s) 125, 217, 397
BmsI GCATC 1 cut(s) 389
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 341, 373
BpmI CTGGAG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 88, 235
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bse1I ACTGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 88, 235
BseGI GGATG 2 cut(s) 39, 128
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 414
BseRI GAGGAG 1 cut(s) 222
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 321, 359
BsmBI CGTCTC 1 cut(s) 321
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 128, 413
Bsp143I GATC 5 cut(s) 96, 228, 354, 444, 498
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 2 cut(s) 116, 483
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 125, 217, 397
BspPI GGATC 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 414
BssECI CCNNGG 2 cut(s) 88, 235
BssMI GATC 5 cut(s) 96, 228, 354, 444, 498
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 447
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 24, 369
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 2 cut(s) 39, 128
BstKTI GATC 5 cut(s) 99, 231, 357, 447, 501
BstMAI GTCTC 2 cut(s) 321, 359
BstMBI GATC 5 cut(s) 96, 228, 354, 444, 498
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 461
BstX2I RGATCY 2 cut(s) 96, 354
BstYI RGATCY 2 cut(s) 96, 354
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 88
BtrI CACGTC 1 cut(s) 439
BtsCI GGATG 2 cut(s) 39, 128
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 118
CseI GACGC 2 cut(s) 86, 338
Csp6I GTAC 1 cut(s) 183
CviAII CATG 3 cut(s) 89, 316, 458
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 24, 369
DpnI GATC 5 cut(s) 98, 230, 356, 446, 500
DpnII GATC 5 cut(s) 96, 228, 354, 444, 498
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 88
Eco147I AGGCCT 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 88
Esp3I CGTCTC 1 cut(s) 321
FaeI CATG 3 cut(s) 92, 319, 461
FaiI YATR 6 cut(s) 90, 261, 317, 335, 363, 459
FatI CATG 3 cut(s) 88, 315, 457
FauI CCCGC 1 cut(s) 109
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 483
FokI GGATG 2 cut(s) 26, 115
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 483
FspBI CTAG 2 cut(s) 51, 518
GluI GCNGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 1 cut(s) 65
HgaI GACGC 2 cut(s) 86, 338
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 92, 319, 461
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 2 cut(s) 20, 190
HphI GGTGA 3 cut(s) 22, 212, 251
Hpy166II GTNNAC 2 cut(s) 30, 304
Hpy188I TCNGA 3 cut(s) 25, 340, 388
Hpy188III TCNNGA 6 cut(s) 194, 223, 349, 406, 496, 505
Hpy8I GTNNAC 2 cut(s) 30, 304
HpyAV CCTTC 2 cut(s) 191, 236
HpyCH4IV ACGT 1 cut(s) 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 24, 369
HpySE526I ACGT 1 cut(s) 438
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 92, 319, 461
Kzo9I GATC 5 cut(s) 96, 228, 354, 444, 498
LguI GCTCTTC 1 cut(s) 447
LmnI GCTCC 3 cut(s) 123, 169, 401
LpnPI CCDG 6 cut(s) 60, 106, 284, 427, 453, 471
LweI GCATC 1 cut(s) 389
MaeI CTAG 2 cut(s) 51, 518
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 3 cut(s) 133, 416, 434
MalI GATC 5 cut(s) 98, 230, 356, 446, 500
MboI GATC 5 cut(s) 96, 228, 354, 444, 498
MboII GAAGA 4 cut(s) 238, 364, 375, 464
MflI RGATCY 2 cut(s) 96, 354
MhlI GDGCHC 2 cut(s) 128, 413
MluCI AATT 1 cut(s) 282
MnlI CCTC 6 cut(s) 43, 158, 200, 245, 316, 386
MseI TTAA 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 88
NdeII GATC 5 cut(s) 96, 228, 354, 444, 498
NlaIII CATG 3 cut(s) 92, 319, 461
NlaIV GGNNCC 3 cut(s) 125, 217, 397
NmuCI GTSAC 2 cut(s) 133, 434
NspI RCATGY 1 cut(s) 461
PceI AGGCCT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 20, 190
PkrI GCNGC 1 cut(s) 484
PspN4I GGNNCC 3 cut(s) 125, 217, 397
PsuI RGATCY 2 cut(s) 96, 354
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 483
Sau3AI GATC 5 cut(s) 96, 228, 354, 444, 498
SduI GDGCHC 2 cut(s) 128, 413
SetI ASST 8 cut(s) 35, 52, 112, 150, 202, 237, 260, 441
SfaNI GCATC 1 cut(s) 389
Sse9I AATT 1 cut(s) 282
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 2 cut(s) 116, 483
SspMI CTAG 2 cut(s) 51, 518
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 1 cut(s) 88
TaiI ACGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 348, 504
TasI AATT 1 cut(s) 282
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 2 cut(s) 20, 190
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 2 cut(s) 133, 434
Tsp45I GTSAC 2 cut(s) 133, 434
TspGWI ACGGA 3 cut(s) 121, 294, 388
TspRI CASTG 1 cut(s) 142
XceI RCATGY 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 2 cut(s) 51, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.