Rmu_sc0002112.1_g000025

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002112.1
N/A
Physical Location & Seq
Reverse (-)
96141 .. 100046
3906 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 882 bp
ctgtggagcattttcgtcaggcattgcagcaggggctgtgaagtgcattggcactccttgcagagaagaagaggaaaatggaacaagaagaagtcgtatggaatgtttgctgactatcaaaggcatcgagctcaacaagggcagcaagaacaaggagaccttggaaatgttcctattggcaattcgttgttctgcgaatctgaagaaataattaggatcactaatcttcacagctatattgaacattcacatgttgaaatcagaattatctgggataccgctggtcaagaacggtttcagagccttggtgtagcattttatcgcggtgctgattgctgtgttcttgtttatgacgttaattcaatgaaatcatttgataaccttaacaactggaaggaagaattccttattcaggctagtcctaacgacccagaaaactttccatttgttgttattggaaacaagattgatgtagatggtggaaatagtagagtggtgtcggagaaaaaggctcgagcttggtgtgcatcaaaaggagacattccgtactatgaaacgtctgccaaggaaggcattaatgtggaagaagctttccagtgcatagcaagggatgctctgaagagtggagaagaggaggagatatacttgccggataccattgatgttggaagcagcagtcagccaaggtcgagtggatgcgagtatctaatcgacgacctcaaacgctgcttcgtcgtttcgcatcaaaacgacactgaatcgcgcggcggcaacgacctggcttttatggtcgatgaggagctccggcgcgaggtccgccatcacaacgtcgttggagttgaaggtgaagaggacagagaccggagcttgaaggcggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

293

Amino Acids

33.54

Weight (kDa)

5.31

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 61 - 201 4.6e-06 Elongation factor Tu GTP binding domain
Ras PF00071 78 - 206 1.8e-34 Ras family
Roc PF08477 83 - 157 2.4e-14 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 324, 763, 765, 810
AciI CCGC 6 cut(s) 279, 324, 765, 768, 817, 875
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 2 cut(s) 222, 638
AfaI GTAC 1 cut(s) 548
AfiI CCNNNNNNNGG 2 cut(s) 412, 811
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 5 cut(s) 242, 257, 363, 842, 871
AjnI CCWGG 1 cut(s) 777
AluBI AGCT 6 cut(s) 131, 234, 518, 590, 802, 867
AluI AGCT 6 cut(s) 131, 234, 518, 590, 802, 867
Alw21I GWGCWC 2 cut(s) 133, 804
Alw26I GTCTC 3 cut(s) 150, 531, 852
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 513
ApeKI GCWGC 4 cut(s) 27, 142, 672, 726
ApoI RAATTY 1 cut(s) 401
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 2 cut(s) 294, 438
AspLEI GCGC 2 cut(s) 765, 810
AspS9I GGNCC 1 cut(s) 814
AsuHPI GGTGA 1 cut(s) 857
AvaI CYCGRG 1 cut(s) 513
AvaII GGWCC 1 cut(s) 814
BanII GRGCYC 2 cut(s) 133, 804
Bbv12I GWGCWC 2 cut(s) 133, 804
BbvI GCAGC 4 cut(s) 39, 154, 684, 713
BccI CCATC 2 cut(s) 470, 828
BciT130I CCWGG 1 cut(s) 779
BciVI GTATCC 2 cut(s) 268, 646
BcoDI GTCTC 3 cut(s) 150, 531, 852
BfaI CTAG 1 cut(s) 417
BfuI GTATCC 2 cut(s) 268, 646
BisI GCNGC 6 cut(s) 28, 143, 673, 727, 766, 769
BlsI GCNGC 6 cut(s) 29, 144, 674, 728, 767, 770
Bme1390I CCNGG 1 cut(s) 779
Bme18I GGWCC 1 cut(s) 814
BmeT110I CYCGRG 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 814
BmrFI CCNGG 1 cut(s) 779
BmsI GCATC 5 cut(s) 133, 536, 601, 686, 751
BsaI GGTCTC 2 cut(s) 150, 852
BsaJI CCNNGG 4 cut(s) 160, 304, 564, 683
BsaWI WCCGGW 1 cut(s) 861
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 811
Bse1I ACTGG 2 cut(s) 395, 595
Bse3DI GCAATG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 4 cut(s) 160, 304, 564, 683
BseGI GGATG 2 cut(s) 616, 701
BseLI CCNNNNNNNGG 2 cut(s) 412, 811
BseMI GCAATG 1 cut(s) 22
BseNI ACTGG 2 cut(s) 395, 595
BseRI GAGGAG 3 cut(s) 647, 650, 812
BseXI GCAGC 4 cut(s) 39, 154, 684, 713
Bsh1236I CGCG 4 cut(s) 324, 763, 765, 810
BsiHKAI GWGCWC 2 cut(s) 133, 804
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 3 cut(s) 650, 805, 862
BslI CCNNNNNNNGG 2 cut(s) 412, 811
BsmAI GTCTC 3 cut(s) 150, 531, 852
Bso31I GGTCTC 2 cut(s) 150, 852
BsoBI CYCGRG 1 cut(s) 513
Bsp1286I GDGCHC 2 cut(s) 133, 804
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 6 cut(s) 279, 324, 765, 768, 817, 875
BspFNI CGCG 4 cut(s) 324, 763, 765, 810
BspPI GGATC 1 cut(s) 224
BspTNI GGTCTC 2 cut(s) 150, 852
BsrDI GCAATG 1 cut(s) 22
BsrI ACTGG 2 cut(s) 395, 595
BssECI CCNNGG 4 cut(s) 160, 304, 564, 683
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 4 cut(s) 160, 304, 564, 683
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 4 cut(s) 64, 614, 624, 843
BstAPI GCANNNNNTGC 2 cut(s) 58, 611
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 2 cut(s) 616, 701
BstFNI CGCG 4 cut(s) 324, 763, 765, 810
BstHHI GCGC 2 cut(s) 765, 810
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 3 cut(s) 150, 531, 852
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 5 cut(s) 33, 58, 524, 611, 816
BstNI CCWGG 1 cut(s) 779
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 777
BstUI CGCG 4 cut(s) 324, 763, 765, 810
BstV1I GCAGC 4 cut(s) 39, 154, 684, 713
BsuI GTATCC 2 cut(s) 268, 646
BtsCI GGATG 2 cut(s) 616, 701
BtsIMutI CAGTG 2 cut(s) 602, 753
CaiI CAGNNNCTG 1 cut(s) 36
CfoI GCGC 2 cut(s) 765, 810
Cfr13I GGNCC 1 cut(s) 814
Csp6I GTAC 1 cut(s) 547
CviAII CATG 1 cut(s) 251
CviQI GTAC 1 cut(s) 547
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 4 cut(s) 64, 614, 624, 843
EarI CTCTTC 4 cut(s) 64, 614, 624, 843
EciI GGCGGA 1 cut(s) 806
Ecl136II GAGCTC 2 cut(s) 131, 802
Eco130I CCWWGG 4 cut(s) 160, 304, 564, 683
Eco24I GRGCYC 2 cut(s) 133, 804
Eco31I GGTCTC 2 cut(s) 150, 852
Eco47I GGWCC 1 cut(s) 814
Eco53kI GAGCTC 2 cut(s) 131, 802
Eco57I CTGAAG 2 cut(s) 222, 638
Eco88I CYCGRG 1 cut(s) 513
EcoICRI GAGCTC 2 cut(s) 131, 802
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 4 cut(s) 160, 304, 564, 683
EcoT38I GRGCYC 2 cut(s) 133, 804
ErhI CCWWGG 4 cut(s) 160, 304, 564, 683
FaeI CATG 1 cut(s) 254
FaiI YATR 8 cut(s) 99, 237, 252, 351, 552, 602, 643, 788
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 390, 422
FatI CATG 1 cut(s) 250
Fnu4HI GCNGC 6 cut(s) 28, 143, 673, 727, 766, 769
FokI GGATG 2 cut(s) 623, 708
FriOI GRGCYC 2 cut(s) 133, 804
Fsp4HI GCNGC 6 cut(s) 28, 143, 673, 727, 766, 769
FspBI CTAG 1 cut(s) 417
GlaI GCGC 2 cut(s) 764, 809
GluI GCNGC 6 cut(s) 28, 143, 673, 727, 766, 769
HapII CCGG 3 cut(s) 650, 805, 862
HhaI GCGC 2 cut(s) 765, 810
Hin1II CATG 1 cut(s) 254
Hin6I GCGC 2 cut(s) 763, 808
HinP1I GCGC 2 cut(s) 763, 808
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 2 cut(s) 197, 758
HpaII CCGG 3 cut(s) 650, 805, 862
HphI GGTGA 1 cut(s) 857
Hpy188I TCNGA 5 cut(s) 202, 263, 300, 502, 618
Hpy188III TCNNGA 1 cut(s) 287
Hpy99I CGWCG 3 cut(s) 716, 737, 833
HpyAV CCTTC 4 cut(s) 388, 563, 836, 865
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4IV ACGT 3 cut(s) 354, 557, 828
HpyCH4V TGCA 5 cut(s) 27, 46, 61, 527, 600
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 58, 524, 611, 816
HpySE526I ACGT 3 cut(s) 354, 557, 828
Hsp92II CATG 1 cut(s) 254
HspAI GCGC 2 cut(s) 763, 808
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 4 cut(s) 6, 799, 807, 864
Lsp1109I GCAGC 4 cut(s) 39, 154, 684, 713
LweI GCATC 5 cut(s) 133, 536, 601, 686, 751
MaeI CTAG 1 cut(s) 417
MaeII ACGT 3 cut(s) 354, 557, 828
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MhlI GDGCHC 2 cut(s) 133, 804
MluCI AATT 5 cut(s) 181, 210, 264, 358, 401
MmeI TCCRAC 3 cut(s) 480, 646, 814
MnlI CCTC 7 cut(s) 65, 625, 628, 728, 790, 805, 844
MroXI GAANNNNTTC 2 cut(s) 294, 438
MseI TTAA 3 cut(s) 357, 384, 576
MslI CAYNNNNRTG 2 cut(s) 249, 578
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 3 cut(s) 650, 805, 862
MspR9I CCNGG 1 cut(s) 779
MvaI CCWGG 1 cut(s) 779
MvnI CGCG 4 cut(s) 324, 763, 765, 810
MwoI GCNNNNNNNGC 5 cut(s) 33, 58, 524, 611, 816
NdeII GATC 1 cut(s) 216
NlaIII CATG 1 cut(s) 254
NspI RCATGY 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 513
PciI ACATGT 1 cut(s) 250
PdmI GAANNNNTTC 2 cut(s) 294, 438
PfeI GAWTC 2 cut(s) 197, 758
PkrI GCNGC 6 cut(s) 29, 144, 674, 728, 767, 770
PscI ACATGT 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 576
Psp124BI GAGCTC 2 cut(s) 133, 804
Psp6I CCWGG 1 cut(s) 777
PspGI CCWGG 1 cut(s) 777
PspPI GGNCC 1 cut(s) 814
PspXI VCTCGAGB 1 cut(s) 513
PstNI CAGNNNCTG 1 cut(s) 36
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 2 cut(s) 249, 578
SacI GAGCTC 2 cut(s) 133, 804
SaqAI TTAA 3 cut(s) 357, 384, 576
SatI GCNGC 6 cut(s) 28, 143, 673, 727, 766, 769
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 814
ScrFI CCNGG 1 cut(s) 779
SduI GDGCHC 2 cut(s) 133, 804
SfaNI GCATC 5 cut(s) 133, 536, 601, 686, 751
Sfr274I CTCGAG 1 cut(s) 513
SinI GGWCC 1 cut(s) 814
SlaI CTCGAG 1 cut(s) 513
SmiMI CAYNNNNRTG 2 cut(s) 249, 578
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 5 cut(s) 181, 210, 264, 358, 401
SsiI CCGC 6 cut(s) 279, 324, 765, 768, 817, 875
SspMI CTAG 1 cut(s) 417
SstI GAGCTC 2 cut(s) 133, 804
StyD4I CCNGG 1 cut(s) 777
StyI CCWWGG 4 cut(s) 160, 304, 564, 683
TaaI ACNGT 1 cut(s) 294
TaiI ACGT 3 cut(s) 357, 560, 831
TaqI TCGA 5 cut(s) 127, 514, 689, 711, 792
TasI AATT 5 cut(s) 181, 210, 264, 358, 401
TauI GCSGC 2 cut(s) 768, 771
TfiI GAWTC 2 cut(s) 197, 758
Tru1I TTAA 3 cut(s) 357, 384, 576
Tru9I TTAA 3 cut(s) 357, 384, 576
TscAI CASTG 2 cut(s) 602, 760
TseI GCWGC 4 cut(s) 27, 142, 672, 726
TspDTI ATGAA 2 cut(s) 380, 567
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 2 cut(s) 602, 760
VpaK11BI GGWCC 1 cut(s) 814
VspI ATTAAT 1 cut(s) 576
XagI CCTNNNNNAGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 401
XceI RCATGY 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 513
XmnI GAANNNNTTC 2 cut(s) 294, 438
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.