Rmu_sc0002115.1_g000008

Belongs to the SKP1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002115.1
N/A
Physical Location & Seq
Reverse (-)
33091 .. 39038
5948 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1359 bp
ctgtccgacggcgagccctttcgccgtcgtcggccgggcctttgtcgaccccttgtgggtctagtgaggtggggttccttcttcgacatcctgctcatggcagtttgtgaggtgaggaagagaaaggtcgcagaggtcgggttttggttggtttctcgttgccatggttggcggagtggtttggtgtcgtgggttcagcgtggtggtgatatggttgtggcggtgcagggagtttctggtcgcgttgtcccgttctgggttgggtccattggatccgatctaggggagagtctgattggtcgaggcggtgctcacccaggccacgtcggggatgatgtgttgatggcggaggtccggcaactctggcagggaggcgtagctggtgatgaggcgcagcgatggggtgatactggtggcggcgatcagttattgggcagggttggtttgttgggcccttgtgggtgggccactgttactagtgatttagggttcgttagcgaaaagtctggctgtgccatagatgagcattattggccttctagtgggttgttcctatctggttttggttcaaaggcgatggcaatttcgagcagttatgatttgacggtgttgacaataggggagttcgtgaaggagtttgaggcggaccagaacgtgttattcgatatgattctggcggcgaattacttgaacattaagggcttgttggatgcaacgtgtgaacatgttgcgagcatgattaaggggaagaccccggaggagatcagaaaaaaaaaattccatataaaaaatgattacactccggaggaagaggaagaggttcatggctggctcggtaccggtaaccggattttttgctctaccaccgctaccgaaccgaaactcatcggttctgaattttttgaaccgccgccgataccgatagatcggttaccgatgaatcggtacaccgaatttgcggctcggtttcggtttgtcgaccgacgctgcggcgacacaccgaacctatgcaattggttgtaccactatcgagccgataactttgcttcggtacggtactacgtaccgtaccttcgggtaccggatttgtcggcaccgaggccaccggttcggccggttttcggctggtttcggatcgcctccgccgtctggtcgtctctctggtggtctctatcgccgattcttctccacggcggtgctgcaaggcagttcagccttgtgttttcggacccggccggaaaacacaactccggcgacctcatggctcaggcttcttgggttgagttcagaacaagtttttggccggcggcggtgcaccaccgtctgtggtggggttccggcggtgttccggccacttaa

Protein Analysis

452

Amino Acids

50.17

Weight (kDa)

7.29

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1 PF01466 233 - 274 2.4e-19 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 836, 1078
AccB1I GGYRCC 3 cut(s) 836, 1078, 1093
AccI GTMKAC 2 cut(s) 46, 978
AccII CGCG 1 cut(s) 243
AccIII TCCGGA 1 cut(s) 802
AclWI GGATC 3 cut(s) 267, 280, 1142
AcoI YGGCCR 5 cut(s) 32, 1112, 1233, 1301, 1350
AcsI RAATTY 3 cut(s) 776, 896, 953
AfaI GTAC 8 cut(s) 838, 947, 1022, 1053, 1058, 1065, 1070, 1080
AfiI CCNNNNNNNGG 9 cut(s) 56, 97, 256, 282, 328, 542, 846, 1121, 1149
AflIII ACRYGT 3 cut(s) 654, 716, 724
AgeI ACCGGT 2 cut(s) 839, 1105
AgsI TTSAA 3 cut(s) 570, 691, 905
AhlI ACTAGT 1 cut(s) 476
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 1282, 1314
AleI CACNNNNGTG 1 cut(s) 1194
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw21I GWGCWC 2 cut(s) 313, 1317
Alw26I GTCTC 2 cut(s) 1161, 1173
Alw44I GTGCAC 1 cut(s) 1313
AlwI GGATC 3 cut(s) 267, 280, 1142
Aor13HI TCCGGA 1 cut(s) 802
ApaI GGGCCC 1 cut(s) 455
ApaLI GTGCAC 1 cut(s) 1313
ApeKI GCWGC 3 cut(s) 394, 987, 1199
ApoI RAATTY 3 cut(s) 776, 896, 953
AsiGI ACCGGT 2 cut(s) 839, 1105
Asp700I GAANNNNTTC 1 cut(s) 819
Asp718I GGTACC 2 cut(s) 836, 1078
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 8 cut(s) 37, 264, 352, 451, 452, 465, 646, 1228
AsuC2I CCSGG 3 cut(s) 36, 755, 1232
AsuHPI GGTGA 5 cut(s) 124, 218, 305, 395, 416
AvaII GGWCC 4 cut(s) 264, 352, 646, 1228
BaeGI GKGCMC 2 cut(s) 455, 1317
BamHI GGATCC 1 cut(s) 272
BanI GGYRCC 3 cut(s) 836, 1078, 1093
BanII GRGCYC 2 cut(s) 18, 455
BarI GAAGNNNNNNTAC 2 cut(s) 1056, 1088
BbsI GAAGAC 1 cut(s) 755
Bbv12I GWGCWC 2 cut(s) 313, 1317
BbvI GCAGC 3 cut(s) 406, 974, 1186
BccI CCATC 3 cut(s) 337, 393, 571
BceAI ACGGC 4 cut(s) 9, 25, 1130, 1207
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 3 cut(s) 36, 755, 1232
BcoDI GTCTC 2 cut(s) 1161, 1173
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 4 cut(s) 62, 281, 477, 540
BisI GCNGC 9 cut(s) 395, 418, 678, 911, 960, 988, 991, 1200, 1308
BlsI GCNGC 9 cut(s) 396, 419, 679, 912, 961, 989, 992, 1201, 1309
Bme1390I CCNGG 4 cut(s) 36, 318, 755, 1232
Bme18I GGWCC 4 cut(s) 264, 352, 646, 1228
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 8 cut(s) 37, 264, 352, 451, 452, 465, 646, 1228
BmiI GGNNCC 9 cut(s) 76, 265, 274, 453, 838, 1080, 1095, 1230, 1336
BmrFI CCNGG 4 cut(s) 36, 318, 755, 1232
BmsI GCATC 1 cut(s) 700
BpiI GAAGAC 1 cut(s) 755
Bpu10I CCTNAGC 1 cut(s) 1266
BpuMI CCSGG 3 cut(s) 36, 755, 1232
BsaAI YACGTR 1 cut(s) 1063
BsaI GGTCTC 1 cut(s) 1173
BsaJI CCNNGG 5 cut(s) 163, 316, 753, 1097, 1189
BsaWI WCCGGW 5 cut(s) 802, 839, 846, 1081, 1105
Bsc4I CCNNNNNNNGG 9 cut(s) 56, 97, 256, 282, 328, 542, 846, 1121, 1149
Bse118I RCCGGY 4 cut(s) 839, 1105, 1114, 1303
Bse1I ACTGG 1 cut(s) 415
BseAI TCCGGA 1 cut(s) 802
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 5 cut(s) 163, 316, 753, 1097, 1189
BseGI GGATG 3 cut(s) 87, 337, 715
BseLI CCNNNNNNNGG 9 cut(s) 56, 97, 256, 282, 328, 542, 846, 1121, 1149
BseMII CTCAG 1 cut(s) 1280
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 1 cut(s) 773
BseSI GKGCMC 2 cut(s) 455, 1317
BseX3I CGGCCG 3 cut(s) 32, 1112, 1233
BseXI GCAGC 3 cut(s) 406, 974, 1186
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 243
Bsh1285I CGRYCG 4 cut(s) 35, 982, 1115, 1236
BshNI GGYRCC 3 cut(s) 836, 1078, 1093
BshTI ACCGGT 2 cut(s) 839, 1105
BsiEI CGRYCG 4 cut(s) 35, 982, 1115, 1236
BsiHKAI GWGCWC 2 cut(s) 313, 1317
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 9 cut(s) 56, 97, 256, 282, 328, 542, 846, 1121, 1149
BsmAI GTCTC 2 cut(s) 1161, 1173
BsmBI CGTCTC 1 cut(s) 1161
BsmFI GGGAC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 1173
Bsp120I GGGCCC 1 cut(s) 451
Bsp1286I GDGCHC 4 cut(s) 18, 313, 455, 1317
Bsp13I TCCGGA 1 cut(s) 802
Bsp143I GATC 6 cut(s) 272, 277, 421, 762, 925, 1134
Bsp19I CCATGG 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 1279
BspEI TCCGGA 1 cut(s) 802
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 9 cut(s) 76, 265, 274, 453, 838, 1080, 1095, 1230, 1336
BspPI GGATC 3 cut(s) 267, 280, 1142
BspT107I GGYRCC 3 cut(s) 836, 1078, 1093
BspTNI GGTCTC 1 cut(s) 1173
BsrFI RCCGGY 4 cut(s) 839, 1105, 1114, 1303
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 4 cut(s) 839, 1105, 1114, 1303
BssECI CCNNGG 5 cut(s) 163, 316, 753, 1097, 1189
BssMI GATC 6 cut(s) 272, 277, 421, 762, 925, 1134
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 5 cut(s) 472, 607, 1056, 1068, 1322
Bst6I CTCTTC 3 cut(s) 113, 804, 810
BstBAI YACGTR 1 cut(s) 1063
BstC8I GCNNGC 4 cut(s) 14, 733, 830, 1305
BstDEI CTNAG 1 cut(s) 1266
BstDSI CCRYGG 2 cut(s) 163, 1189
BstEII GGTNACC 2 cut(s) 842, 930
BstF5I GGATG 3 cut(s) 87, 337, 715
BstFNI CGCG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 6 cut(s) 275, 280, 424, 765, 928, 1137
BstMAI GTCTC 2 cut(s) 1161, 1173
BstMBI GATC 6 cut(s) 272, 277, 421, 762, 925, 1134
BstMCI CGRYCG 4 cut(s) 35, 982, 1115, 1236
BstMWI GCNNNNNNNGC 2 cut(s) 364, 532
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 728
BstPI GGTNACC 2 cut(s) 842, 930
BstSCI CCNGG 4 cut(s) 34, 316, 753, 1230
BstSLI GKGCMC 2 cut(s) 455, 1317
BstSNI TACGTA 1 cut(s) 1063
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 406, 974, 1186
BstV2I GAAGAC 1 cut(s) 755
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BstZI CGGCCG 3 cut(s) 32, 1112, 1233
BtgI CCRYGG 2 cut(s) 163, 1189
BtgZI GCGATG 2 cut(s) 412, 590
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 3 cut(s) 87, 337, 715
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 4 cut(s) 14, 733, 830, 1305
CfoI GCGC 1 cut(s) 394
Cfr10I RCCGGY 4 cut(s) 839, 1105, 1114, 1303
Cfr13I GGNCC 8 cut(s) 37, 264, 352, 451, 452, 465, 646, 1228
CseI GACGC 1 cut(s) 993
Csp6I GTAC 8 cut(s) 837, 946, 1021, 1052, 1057, 1064, 1069, 1079
CspAI ACCGGT 2 cut(s) 839, 1105
CviAII CATG 6 cut(s) 97, 164, 725, 736, 824, 1261
CviQI GTAC 8 cut(s) 837, 946, 1021, 1052, 1057, 1064, 1069, 1079
DdeI CTNAG 1 cut(s) 1266
DpnI GATC 6 cut(s) 274, 279, 423, 764, 927, 1136
DpnII GATC 6 cut(s) 272, 277, 421, 762, 925, 1134
EaeI YGGCCR 5 cut(s) 32, 1112, 1233, 1301, 1350
EagI CGGCCG 3 cut(s) 32, 1112, 1233
Eam1104I CTCTTC 3 cut(s) 113, 804, 810
EarI CTCTTC 3 cut(s) 113, 804, 810
EciI GGCGGA 4 cut(s) 187, 362, 659, 1132
EclXI CGGCCG 3 cut(s) 32, 1112, 1233
Eco105I TACGTA 1 cut(s) 1063
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 2 cut(s) 18, 455
Eco31I GGTCTC 1 cut(s) 1173
Eco47I GGWCC 4 cut(s) 264, 352, 646, 1228
Eco52I CGGCCG 3 cut(s) 32, 1112, 1233
Eco91I GGTNACC 2 cut(s) 842, 930
EcoO109I RGGNCCY 1 cut(s) 452
EcoO65I GGTNACC 2 cut(s) 842, 930
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 163
EcoT38I GRGCYC 2 cut(s) 18, 455
ErhI CCWWGG 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 1161
FaeI CATG 6 cut(s) 100, 167, 728, 739, 827, 1264
FaqI GGGAC 1 cut(s) 233
FatI CATG 6 cut(s) 96, 163, 724, 735, 823, 1260
FblI GTMKAC 2 cut(s) 46, 978
Fnu4HI GCNGC 9 cut(s) 395, 418, 678, 911, 960, 988, 991, 1200, 1308
FokI GGATG 3 cut(s) 74, 344, 722
FriOI GRGCYC 2 cut(s) 18, 455
Fsp4HI GCNGC 9 cut(s) 395, 418, 678, 911, 960, 988, 991, 1200, 1308
FspBI CTAG 4 cut(s) 62, 281, 477, 540
GlaI GCGC 1 cut(s) 393
GluI GCNGC 9 cut(s) 395, 418, 678, 911, 960, 988, 991, 1200, 1308
HgaI GACGC 1 cut(s) 993
HhaI GCGC 1 cut(s) 394
Hin1II CATG 6 cut(s) 100, 167, 728, 739, 827, 1264
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 3 cut(s) 47, 612, 979
HindII GTYRAC 3 cut(s) 47, 612, 979
HinfI GANTC 4 cut(s) 289, 670, 940, 1180
HphI GGTGA 5 cut(s) 124, 218, 305, 395, 416
Hpy166II GTNNAC 6 cut(s) 47, 612, 722, 948, 979, 1315
Hpy188I TCNGA 8 cut(s) 7, 277, 294, 767, 895, 1134, 1228, 1289
Hpy188III TCNNGA 2 cut(s) 628, 803
Hpy8I GTNNAC 6 cut(s) 47, 612, 722, 948, 979, 1315
Hpy99I CGWCG 5 cut(s) 11, 30, 33, 329, 987
HpyAV CCTTC 4 cut(s) 88, 546, 625, 1082
HpyCH4III ACNGT 5 cut(s) 472, 607, 1056, 1068, 1322
HpyCH4IV ACGT 4 cut(s) 324, 654, 716, 1062
HpyCH4V TGCA 5 cut(s) 226, 713, 1011, 1202, 1315
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 532
HpyF3I CTNAG 1 cut(s) 1266
HpySE526I ACGT 4 cut(s) 324, 654, 716, 1062
Hsp92II CATG 6 cut(s) 100, 167, 728, 739, 827, 1264
HspAI GCGC 1 cut(s) 392
Kpn2I TCCGGA 1 cut(s) 802
KpnI GGTACC 2 cut(s) 840, 1082
KroI GCCGGC 1 cut(s) 1303
KroNI GCCGGC 1 cut(s) 1305
Kzo9I GATC 6 cut(s) 272, 277, 421, 762, 925, 1134
Lsp1109I GCAGC 3 cut(s) 406, 974, 1186
LweI GCATC 1 cut(s) 700
MaeI CTAG 4 cut(s) 62, 281, 477, 540
MaeII ACGT 4 cut(s) 324, 654, 716, 1062
MaeIII GTNAC 3 cut(s) 472, 842, 930
MalI GATC 6 cut(s) 274, 279, 423, 764, 927, 1136
MboI GATC 6 cut(s) 272, 277, 421, 762, 925, 1134
MboII GAAGA 6 cut(s) 73, 130, 760, 821, 827, 1175
MfeI CAATTG 1 cut(s) 1012
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 4 cut(s) 18, 313, 455, 1317
MluCI AATT 6 cut(s) 582, 682, 776, 896, 953, 1012
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 2 cut(s) 30, 687
MroI TCCGGA 1 cut(s) 802
MroNI GCCGGC 1 cut(s) 1303
MroXI GAANNNNTTC 1 cut(s) 819
MseI TTAA 3 cut(s) 696, 741, 1357
MslI CAYNNNNRTG 1 cut(s) 1194
MspR9I CCNGG 4 cut(s) 36, 318, 755, 1232
MunI CAATTG 1 cut(s) 1012
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 364, 532
NaeI GCCGGC 1 cut(s) 1305
NciI CCSGG 3 cut(s) 36, 755, 1232
NcoI CCATGG 1 cut(s) 163
NdeII GATC 6 cut(s) 272, 277, 421, 762, 925, 1134
NgoMIV GCCGGC 1 cut(s) 1303
NlaIII CATG 6 cut(s) 100, 167, 728, 739, 827, 1264
NlaIV GGNNCC 9 cut(s) 76, 265, 274, 453, 838, 1080, 1095, 1230, 1336
NspI RCATGY 1 cut(s) 728
OliI CACNNNNGTG 1 cut(s) 1194
PciI ACATGT 1 cut(s) 724
PcsI WCGNNNNNNNCGW 2 cut(s) 660, 1143
PdiI GCCGGC 1 cut(s) 1305
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 3 cut(s) 670, 940, 1180
PinAI ACCGGT 2 cut(s) 839, 1105
PkrI GCNGC 9 cut(s) 396, 419, 679, 912, 961, 989, 992, 1201, 1309
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Ppu21I YACGTR 1 cut(s) 1063
PscI ACATGT 1 cut(s) 724
Psp6I CCWGG 1 cut(s) 316
PspEI GGTNACC 2 cut(s) 842, 930
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 9 cut(s) 76, 265, 274, 453, 838, 1080, 1095, 1230, 1336
PspOMI GGGCCC 1 cut(s) 451
PspPI GGNCC 8 cut(s) 37, 264, 352, 451, 452, 465, 646, 1228
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 8 cut(s) 838, 947, 1022, 1053, 1058, 1065, 1070, 1080
RsaNI GTAC 8 cut(s) 837, 946, 1021, 1052, 1057, 1064, 1069, 1079
RseI CAYNNNNRTG 1 cut(s) 1194
SalI GTCGAC 2 cut(s) 45, 977
SaqAI TTAA 3 cut(s) 696, 741, 1357
SatI GCNGC 9 cut(s) 395, 418, 678, 911, 960, 988, 991, 1200, 1308
Sau3AI GATC 6 cut(s) 272, 277, 421, 762, 925, 1134
Sau96I GGNCC 8 cut(s) 37, 264, 352, 451, 452, 465, 646, 1228
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 4 cut(s) 36, 318, 755, 1232
SduI GDGCHC 4 cut(s) 18, 313, 455, 1317
SfaNI GCATC 1 cut(s) 700
SinI GGWCC 4 cut(s) 264, 352, 646, 1228
SmiMI CAYNNNNRTG 1 cut(s) 1194
SnaBI TACGTA 1 cut(s) 1063
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 6 cut(s) 582, 682, 776, 896, 953, 1012
SspMI CTAG 4 cut(s) 62, 281, 477, 540
StyD4I CCNGG 4 cut(s) 34, 316, 753, 1230
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 5 cut(s) 472, 607, 1056, 1068, 1322
TaiI ACGT 4 cut(s) 327, 657, 719, 1065
TaqI TCGA 7 cut(s) 46, 84, 301, 587, 663, 978, 1030
TaqII GACCGA 1 cut(s) 996
TasI AATT 6 cut(s) 582, 682, 776, 896, 953, 1012
TauI GCSGC 6 cut(s) 420, 680, 913, 962, 993, 1310
TfiI GAWTC 3 cut(s) 670, 940, 1180
Tru1I TTAA 3 cut(s) 696, 741, 1357
Tru9I TTAA 3 cut(s) 696, 741, 1357
TscAI CASTG 1 cut(s) 475
TseI GCWGC 3 cut(s) 394, 987, 1199
TspDTI ATGAA 2 cut(s) 812, 953
TspRI CASTG 1 cut(s) 475
VneI GTGCAC 1 cut(s) 1313
VpaK11BI GGWCC 4 cut(s) 264, 352, 646, 1228
XapI RAATTY 3 cut(s) 776, 896, 953
XceI RCATGY 1 cut(s) 728
XmiI GTMKAC 2 cut(s) 46, 978
XmnI GAANNNNTTC 1 cut(s) 819
XspI CTAG 4 cut(s) 62, 281, 477, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.