Rmu_sc0002144.1_g000004

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002144.1
N/A
Physical Location & Seq
Forward (+)
5134 .. 6042
909 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
atggtgtcccacttgcctacttctcaggtttcagtgctagctgcaaccagtgttttctttggcccacctgaatatctcactggtgcaaacagaaactatgctctcccatcaccacaaagcttgacatctccacgagaatgggtcccttttccttctttggtggcattgaaggagcatgaagccatttctgtgcctcaaaggtctttcgcaccaaatagtacagggataagttttatgtcaaggattgccaagatcatatcagcaagtcaagttttggcgattcgtacttgcagtgagattgaaggagactacttggaagtgtacaagaaaattactggaaagccagtgattcccattggtgtgcttcctccagatcaacctgggaaaagggaaaaaggggaaataaagatgtttgattggcttgataagcaaaaacccaggtcaattgtgtttgtggggtttgggagtgagtgtaggctgagcaaagaacaagttcatgagatagctcatgggctggagctatcagaattgccatttatttggggactcagaaaacctatttcagctaacagtgatgaagtagatgattttcggcctttaggttttgttgacaggacatcagagaaagggcttgtttactttggatgggtgccccaaatggaaattttggcccacccatcagttgggggctctctgtttcattctggatggggttctgtgattgagaccctacaatttgggcattgcctagttgtgttacccaaggttttaaatatctgcgatatatccgatatctcccccgatgtctccttttttcgacggaccgatatatttaggggggtaaatatcttatctttcaccgtttctgcgaaatttctccgacatcgtcaaatatccccgatatattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

302

Amino Acids

33.6

Weight (kDa)

7.72

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 144 - 254 2.7e-09 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 649
AccB7I CCANNNNNTGG 1 cut(s) 683
AcsI RAATTY 2 cut(s) 663, 872
AfaI GTAC 3 cut(s) 220, 286, 323
AfiI CCNNNNNNNGG 1 cut(s) 683
AgsI TTSAA 2 cut(s) 169, 302
AjnI CCWGG 2 cut(s) 379, 437
AluBI AGCT 5 cut(s) 41, 120, 506, 520, 566
AluI AGCT 5 cut(s) 41, 120, 506, 520, 566
Alw26I GTCTC 3 cut(s) 300, 719, 811
AoxI GGCC 3 cut(s) 61, 593, 669
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 2 cut(s) 663, 872
Asp700I GAANNNNTTC 1 cut(s) 492
AspS9I GGNCC 4 cut(s) 62, 142, 670, 822
AsuHPI GGTGA 2 cut(s) 102, 850
AsuNHI GCTAGC 1 cut(s) 37
AvaII GGWCC 2 cut(s) 142, 822
BaeGI GKGCMC 1 cut(s) 654
BanI GGYRCC 1 cut(s) 649
BanII GRGCYC 1 cut(s) 692
BauI CACGAG 1 cut(s) 132
BbvI GCAGC 1 cut(s) 28
BccI CCATC 4 cut(s) 115, 639, 685, 702
BciT130I CCWGG 2 cut(s) 381, 439
BcoDI GTCTC 3 cut(s) 300, 719, 811
BfaI CTAG 2 cut(s) 38, 749
BisI GCNGC 1 cut(s) 42
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 381, 439
Bme18I GGWCC 2 cut(s) 142, 822
BmgT120I GGNCC 4 cut(s) 62, 142, 670, 822
BmiI GGNNCC 3 cut(s) 143, 144, 651
BmrFI CCNGG 2 cut(s) 381, 439
BmtI GCTAGC 1 cut(s) 41
BpmI CTGGAG 2 cut(s) 354, 536
Bpu1102I GCTNAGC 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 3 cut(s) 380, 437, 762
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse1I ACTGG 4 cut(s) 48, 85, 340, 344
Bse3DI GCAATG 1 cut(s) 742
BseBI CCWGG 2 cut(s) 381, 439
BseDI CCNNGG 3 cut(s) 380, 437, 762
BseGI GGATG 2 cut(s) 650, 713
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 3 cut(s) 38, 470, 562
BseNI ACTGG 4 cut(s) 48, 85, 340, 344
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 3 cut(s) 63, 595, 671
BshNI GGYRCC 1 cut(s) 649
BslFI GGGAC 2 cut(s) 128, 558
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 3 cut(s) 300, 719, 811
BsmFI GGGAC 2 cut(s) 128, 558
BsnI GGCC 3 cut(s) 63, 595, 671
Bso31I GGTCTC 1 cut(s) 719
Bsp1286I GDGCHC 2 cut(s) 654, 692
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 2 cut(s) 252, 373
Bsp1720I GCTNAGC 1 cut(s) 479
BspANI GGCC 3 cut(s) 63, 595, 671
BspCNI CTCAG 3 cut(s) 37, 471, 561
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 3 cut(s) 143, 144, 651
BspOI GCTAGC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 649
BspTNI GGTCTC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 742
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 4 cut(s) 48, 85, 340, 344
BssECI CCNNGG 3 cut(s) 380, 437, 762
BssMI GATC 2 cut(s) 252, 373
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 762
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 381, 439
Bst4CI ACNGT 2 cut(s) 572, 862
BstAUI TGTACA 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 24, 479, 548
BstF5I GGATG 2 cut(s) 650, 713
BstKTI GATC 2 cut(s) 255, 376
BstMAI GTCTC 3 cut(s) 300, 719, 811
BstMBI GATC 2 cut(s) 252, 373
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNI CCWGG 2 cut(s) 381, 439
BstSCI CCNGG 2 cut(s) 379, 437
BstSLI GKGCMC 1 cut(s) 654
BstV1I GCAGC 1 cut(s) 28
BstXI CCANNNNNNTGG 2 cut(s) 138, 540
BsuRI GGCC 3 cut(s) 63, 595, 671
BtsCI GGATG 2 cut(s) 650, 713
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 6 cut(s) 39, 55, 78, 298, 351, 577
Cac8I GCNNGC 1 cut(s) 39
CciI TCATGA 1 cut(s) 496
Cfr13I GGNCC 4 cut(s) 62, 142, 670, 822
CpoI CGGWCCG 1 cut(s) 822
Csp6I GTAC 3 cut(s) 219, 285, 322
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CspI CGGWCCG 1 cut(s) 822
CviAII CATG 3 cut(s) 176, 497, 509
CviQI GTAC 3 cut(s) 219, 285, 322
DdeI CTNAG 3 cut(s) 24, 479, 548
DpnI GATC 2 cut(s) 254, 375
DpnII GATC 2 cut(s) 252, 373
DraI TTTAAA 1 cut(s) 771
Eco130I CCWWGG 1 cut(s) 762
Eco24I GRGCYC 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 719
Eco32I GATATC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 142, 822
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 379, 437
EcoRV GATATC 1 cut(s) 793
EcoT14I CCWWGG 1 cut(s) 762
EcoT38I GRGCYC 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 762
FaeI CATG 3 cut(s) 179, 500, 512
FaiI YATR 9 cut(s) 99, 177, 236, 257, 498, 510, 785, 830, 904
FaqI GGGAC 2 cut(s) 128, 558
FatI CATG 3 cut(s) 175, 496, 508
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 657, 720
FriOI GRGCYC 1 cut(s) 692
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 2 cut(s) 38, 749
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 2 cut(s) 354, 536
HaeIII GGCC 3 cut(s) 63, 595, 671
Hin1II CATG 3 cut(s) 179, 500, 512
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 3 cut(s) 280, 349, 546
HphI GGTGA 2 cut(s) 102, 850
Hpy166II GTNNAC 3 cut(s) 322, 610, 637
Hpy188I TCNGA 5 cut(s) 526, 551, 622, 790, 881
Hpy188III TCNNGA 3 cut(s) 371, 497, 705
Hpy8I GTNNAC 3 cut(s) 322, 610, 637
Hpy99I CGWCG 1 cut(s) 822
HpyAV CCTTC 3 cut(s) 162, 163, 296
HpyCH4III ACNGT 2 cut(s) 572, 862
HpyCH4V TGCA 3 cut(s) 44, 86, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 3 cut(s) 24, 479, 548
Hsp92II CATG 3 cut(s) 179, 500, 512
KflI GGGWCCC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 252, 373
LmnI GCTCC 2 cut(s) 172, 517
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 2 cut(s) 38, 749
MaeIII GTNAC 1 cut(s) 756
MalI GATC 2 cut(s) 254, 375
MboI GATC 2 cut(s) 252, 373
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 2 cut(s) 654, 692
MluCI AATT 6 cut(s) 330, 444, 527, 663, 734, 872
MlyI GAGTC 1 cut(s) 540
MmeI TCCRAC 1 cut(s) 904
MnlI CCTC 2 cut(s) 204, 378
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 1 cut(s) 770
MslI CAYNNNNRTG 3 cut(s) 136, 188, 359
MspR9I CCNGG 2 cut(s) 381, 439
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 2 cut(s) 381, 439
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeII GATC 2 cut(s) 252, 373
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 3 cut(s) 179, 500, 512
NlaIV GGNNCC 3 cut(s) 143, 144, 651
PagI TCATGA 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 2 cut(s) 280, 349
PflFI GACNNNGTC 1 cut(s) 885
PflMI CCANNNNNTGG 1 cut(s) 683
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 540
PpsI GAGTC 1 cut(s) 540
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 379, 437
PspGI CCWGG 2 cut(s) 379, 437
PspN4I GGNNCC 3 cut(s) 143, 144, 651
PspPI GGNCC 4 cut(s) 62, 142, 670, 822
PspPPI RGGWCCY 1 cut(s) 142
PsyI GACNNNGTC 1 cut(s) 885
RsaI GTAC 3 cut(s) 220, 286, 323
RsaNI GTAC 3 cut(s) 219, 285, 322
RseI CAYNNNNRTG 3 cut(s) 136, 188, 359
Rsr2I CGGWCCG 1 cut(s) 822
RsrII CGGWCCG 1 cut(s) 822
SaqAI TTAA 1 cut(s) 770
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 252, 373
Sau96I GGNCC 4 cut(s) 62, 142, 670, 822
SchI GAGTC 1 cut(s) 540
ScrFI CCNGG 2 cut(s) 381, 439
SduI GDGCHC 2 cut(s) 654, 692
SinI GGWCC 2 cut(s) 142, 822
SmiMI CAYNNNNRTG 3 cut(s) 136, 188, 359
Sse9I AATT 6 cut(s) 330, 444, 527, 663, 734, 872
SspMI CTAG 2 cut(s) 38, 749
StyD4I CCNGG 2 cut(s) 379, 437
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 2 cut(s) 572, 862
TaqI TCGA 1 cut(s) 817
TaqII GACCGA 1 cut(s) 839
TasI AATT 6 cut(s) 330, 444, 527, 663, 734, 872
TatI WGTACW 2 cut(s) 218, 321
TfiI GAWTC 2 cut(s) 280, 349
Tru1I TTAA 1 cut(s) 770
Tru9I TTAA 1 cut(s) 770
TscAI CASTG 6 cut(s) 39, 55, 85, 298, 351, 577
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 192, 485, 591, 689
TspGWI ACGGA 1 cut(s) 835
TspRI CASTG 6 cut(s) 39, 55, 85, 298, 351, 577
Tth111I GACNNNGTC 1 cut(s) 885
Van91I CCANNNNNTGG 1 cut(s) 683
VpaK11BI GGWCC 2 cut(s) 142, 822
XapI RAATTY 2 cut(s) 663, 872
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 2 cut(s) 38, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.