Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002148.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

121789 .. 126962

Gene Structure 5174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggcttatcctttccgtgatttacgggaatcagatctactttcggctaaagctgtctgccacagcgcctcgagattcgctcggcagaccaataaccggtggactcccacgccagatcaactaagaatcctccaggagctttactatgacaaggtgcttaagtacccaactccagagcagattcaagagatctgccttcatctgaaacagtatgggcagattgaggacaagaacgtcttcttttggttccagaacctcgaggctcgagataggcagaagttgaggttaattcagaacgttcgggttggtggatctctcgatctcaattttggatccactagttctactgatgatggtaggtccattgatctcaactttggttccactggttctactggtgatgatggatctattgatctaaattttgggtcatgtgtcggctatggggccgacccgccgccgaccatcgccgatgatgtcggggccaggttgctcctcttcatctcatcaagcctaaccattttcctaactagcatgaagtctgaaaatgaccggaaggggtcaaaattacctagaacagtcgagctcgagatatcacgatcgaaaggttttggttttcgatcgaaaactggtcgagctccgacgaacgtgaatccggtcactccaggtgcgatccttctggccgcgccgccgtgcaaggttgccacagacaggtgcgcaaggaccaggcgaagccaatggaagaagtttggtgaggattggtggccggaggaggaagatatcgccgatcgaaaatcgaaggcgatttccggtcgggagctggctgctgcagccggtttccaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

282

Amino Acids

31.51

Weight (kDa)

8.76

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	32 - 92	1.9e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AbsI	CCTCGAGG	1 cut(s)	257
Acc16I	TGCGCA	1 cut(s)	718
AccII	CGCG	1 cut(s)	686
AciI	CCGC	4 cut(s)	455, 458, 684, 689
AclI	AACGTT	1 cut(s)	297
AclWI	GGATC	5 cut(s)	319, 327, 340, 415, 667
AcoI	YGGCCR	2 cut(s)	681, 764
AcsI	RAATTY	1 cut(s)	421
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	96, 711
AflII	CTTAAG	1 cut(s)	158
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	185
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	4 cut(s)	132, 485, 664, 725
AluBI	AGCT	5 cut(s)	53, 139, 586, 638, 820
AluI	AGCT	5 cut(s)	53, 139, 586, 638, 820
Alw21I	GWGCWC	2 cut(s)	588, 640
AlwI	GGATC	5 cut(s)	319, 327, 340, 415, 667
Ama87I	CYCGRG	4 cut(s)	70, 257, 264, 587
AoxI	GGCC	4 cut(s)	447, 483, 681, 764
ApeKI	GCWGC	3 cut(s)	824, 827, 830
ApoI	RAATTY	1 cut(s)	421
AsiGI	ACCGGT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	3 cut(s)	68, 688, 719
AspS9I	GGNCC	4 cut(s)	360, 447, 483, 723
AsuHPI	GGTGA	2 cut(s)	410, 764
AvaI	CYCGRG	4 cut(s)	70, 257, 264, 587
AvaII	GGWCC	2 cut(s)	360, 723
BamHI	GGATCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	588, 640
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	588, 640
BbvI	GCAGC	3 cut(s)	811, 814, 842
BccI	CCATC	3 cut(s)	347, 398, 473
BceAI	ACGGC	1 cut(s)	676
BciT130I	CCWGG	4 cut(s)	134, 487, 666, 727
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	3 cut(s)	339, 531, 573
BfmI	CTRYAG	1 cut(s)	828
BfoI	RGCGCY	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	158
BglII	AGATCT	2 cut(s)	34, 189
BisI	GCNGC	6 cut(s)	458, 684, 689, 825, 828, 831
BlsI	GCNGC	6 cut(s)	459, 685, 690, 826, 829, 832
Bme1390I	CCNGG	4 cut(s)	134, 487, 666, 727
Bme18I	GGWCC	2 cut(s)	360, 723
BmeT110I	CYCGRG	4 cut(s)	70, 257, 264, 587
BmgT120I	GGNCC	4 cut(s)	360, 447, 483, 723
BmiI	GGNNCC	5 cut(s)	248, 334, 382, 448, 484
BmrFI	CCNGG	4 cut(s)	134, 487, 666, 727
BpiI	GAAGAC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpmI	CTGGAG	3 cut(s)	116, 156, 648
BsaWI	WCCGGW	4 cut(s)	96, 552, 655, 809
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 711
Bse118I	RCCGGY	2 cut(s)	96, 833
Bse1I	ACTGG	3 cut(s)	391, 400, 634
BseBI	CCWGG	4 cut(s)	134, 487, 666, 727
BseLI	CCNNNNNNNGG	2 cut(s)	96, 711
BseNI	ACTGG	3 cut(s)	391, 400, 634
BseRI	GAGGAG	2 cut(s)	485, 785
BseXI	GCAGC	3 cut(s)	811, 814, 842
Bsh1236I	CGCG	1 cut(s)	686
Bsh1285I	CGRYCG	4 cut(s)	602, 623, 790, 814
BshFI	GGCC	4 cut(s)	449, 485, 683, 766
BshTI	ACCGGT	1 cut(s)	96
BsiEI	CGRYCG	4 cut(s)	602, 623, 790, 814
BsiHKAI	GWGCWC	2 cut(s)	588, 640
BsiHKCI	CYCGRG	4 cut(s)	70, 257, 264, 587
BsiSI	CCGG	6 cut(s)	97, 553, 656, 767, 810, 834
BslI	CCNNNNNNNGG	2 cut(s)	96, 711
BsnI	GGCC	4 cut(s)	449, 485, 683, 766
BsoBI	CYCGRG	4 cut(s)	70, 257, 264, 587
Bsp1286I	GDGCHC	2 cut(s)	588, 640
BspACI	CCGC	4 cut(s)	455, 458, 684, 689
BspANI	GGCC	4 cut(s)	449, 485, 683, 766
BspFNI	CGCG	1 cut(s)	686
BspLI	GGNNCC	5 cut(s)	248, 334, 382, 448, 484
BspMAI	CTGCAG	1 cut(s)	832
BspPI	GGATC	5 cut(s)	319, 327, 340, 415, 667
BspTI	CTTAAG	1 cut(s)	158
BsrFI	RCCGGY	2 cut(s)	96, 833
BsrI	ACTGG	3 cut(s)	391, 400, 634
BssAI	RCCGGY	2 cut(s)	96, 833
Bst2UI	CCWGG	4 cut(s)	134, 487, 666, 727
Bst4CI	ACNGT	2 cut(s)	210, 580
Bst6I	CTCTTC	1 cut(s)	503
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	686
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	3 cut(s)	68, 688, 719
BstMCI	CGRYCG	4 cut(s)	602, 623, 790, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	830
BstNI	CCWGG	4 cut(s)	134, 487, 666, 727
BstSCI	CCNGG	4 cut(s)	132, 485, 664, 725
BstSFI	CTRYAG	1 cut(s)	828
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	3 cut(s)	811, 814, 842
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	5 cut(s)	34, 189, 311, 332, 407
BstYI	RGATCY	5 cut(s)	34, 189, 311, 332, 407
BsuRI	GGCC	4 cut(s)	449, 485, 683, 766
BtgZI	GCGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	822
CfoI	GCGC	3 cut(s)	68, 688, 719
Cfr10I	RCCGGY	2 cut(s)	96, 833
Cfr13I	GGNCC	4 cut(s)	360, 447, 483, 723
Csp6I	GTAC	1 cut(s)	163
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	2 cut(s)	432, 535
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	122
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	2 cut(s)	681, 764
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Ecl136II	GAGCTC	2 cut(s)	586, 638
Eco24I	GRGCYC	2 cut(s)	588, 640
Eco32I	GATATC	2 cut(s)	594, 781
Eco47I	GGWCC	2 cut(s)	360, 723
Eco53kI	GAGCTC	2 cut(s)	586, 638
Eco88I	CYCGRG	4 cut(s)	70, 257, 264, 587
EcoICRI	GAGCTC	2 cut(s)	586, 638
EcoRII	CCWGG	4 cut(s)	132, 485, 664, 725
EcoRV	GATATC	2 cut(s)	594, 781
EcoT38I	GRGCYC	2 cut(s)	588, 640
FaeI	CATG	2 cut(s)	435, 538
FaiI	YATR	5 cut(s)	147, 213, 433, 444, 536
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	2 cut(s)	431, 534
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	6 cut(s)	458, 684, 689, 825, 828, 831
FriOI	GRGCYC	2 cut(s)	588, 640
Fsp4HI	GCNGC	6 cut(s)	458, 684, 689, 825, 828, 831
FspBI	CTAG	3 cut(s)	339, 531, 573
FspI	TGCGCA	1 cut(s)	718
GlaI	GCGC	3 cut(s)	67, 687, 718
GluI	GCNGC	6 cut(s)	458, 684, 689, 825, 828, 831
GsuI	CTGGAG	3 cut(s)	116, 156, 648
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	4 cut(s)	449, 485, 683, 766
HapII	CCGG	6 cut(s)	97, 553, 656, 767, 810, 834
HhaI	GCGC	3 cut(s)	68, 688, 719
Hin1II	CATG	2 cut(s)	435, 538
Hin6I	GCGC	3 cut(s)	66, 686, 717
HinP1I	GCGC	3 cut(s)	66, 686, 717
HinfI	GANTC	6 cut(s)	29, 75, 103, 126, 181, 652
HpaII	CCGG	6 cut(s)	97, 553, 656, 767, 810, 834
HphI	GGTGA	2 cut(s)	410, 764
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	5 cut(s)	34, 204, 294, 544, 642
Hpy188III	TCNNGA	9 cut(s)	72, 173, 185, 250, 266, 317, 589, 597, 815
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	1 cut(s)	646
HpyAV	CCTTC	4 cut(s)	206, 550, 686, 793
HpyCH4III	ACNGT	2 cut(s)	210, 580
HpyCH4IV	ACGT	3 cut(s)	234, 297, 648
HpyCH4V	TGCA	2 cut(s)	696, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	830
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	3 cut(s)	234, 297, 648
Hsp92II	CATG	2 cut(s)	435, 538
HspAI	GCGC	3 cut(s)	66, 686, 717
LmnI	GCTCC	4 cut(s)	136, 498, 643, 817
Lsp1109I	GCAGC	3 cut(s)	811, 814, 842
MaeI	CTAG	3 cut(s)	339, 531, 573
MaeII	ACGT	3 cut(s)	234, 297, 648
MaeIII	GTNAC	1 cut(s)	658
MboII	GAAGA	4 cut(s)	229, 490, 754, 788
MflI	RGATCY	5 cut(s)	34, 189, 311, 332, 407
MhlI	GDGCHC	2 cut(s)	588, 640
MluCI	AATT	5 cut(s)	288, 325, 421, 566, 842
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	665
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	2 cut(s)	159, 287
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	6 cut(s)	97, 553, 656, 767, 810, 834
MspR9I	CCNGG	4 cut(s)	134, 487, 666, 727
MvaI	CCWGG	4 cut(s)	134, 487, 666, 727
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	1 cut(s)	830
NlaIII	CATG	2 cut(s)	435, 538
NlaIV	GGNNCC	5 cut(s)	248, 334, 382, 448, 484
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	658
NsbI	TGCGCA	1 cut(s)	718
PaeR7I	CTCGAG	4 cut(s)	70, 257, 264, 587
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	5 cut(s)	29, 75, 126, 181, 652
PfoI	TCCNGGA	1 cut(s)	132
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	6 cut(s)	459, 685, 690, 826, 829, 832
Ple19I	CGATCG	3 cut(s)	602, 623, 790
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp124BI	GAGCTC	2 cut(s)	588, 640
Psp1406I	AACGTT	1 cut(s)	297
Psp6I	CCWGG	4 cut(s)	132, 485, 664, 725
PspGI	CCWGG	4 cut(s)	132, 485, 664, 725
PspN4I	GGNNCC	5 cut(s)	248, 334, 382, 448, 484
PspPI	GGNCC	4 cut(s)	360, 447, 483, 723
PspXI	VCTCGAGB	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	832
PsuI	RGATCY	5 cut(s)	34, 189, 311, 332, 407
PvuI	CGATCG	3 cut(s)	602, 623, 790
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	2 cut(s)	588, 640
SaqAI	TTAA	2 cut(s)	159, 287
SatI	GCNGC	6 cut(s)	458, 684, 689, 825, 828, 831
Sau96I	GGNCC	4 cut(s)	360, 447, 483, 723
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	4 cut(s)	134, 487, 666, 727
SduI	GDGCHC	2 cut(s)	588, 640
SfcI	CTRYAG	1 cut(s)	828
Sfr274I	CTCGAG	4 cut(s)	70, 257, 264, 587
SinI	GGWCC	2 cut(s)	360, 723
SlaI	CTCGAG	4 cut(s)	70, 257, 264, 587
SmlI	CTYRAG	5 cut(s)	70, 158, 257, 264, 587
SmoI	CTYRAG	5 cut(s)	70, 158, 257, 264, 587
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	5 cut(s)	288, 325, 421, 566, 842
SsiI	CCGC	4 cut(s)	455, 458, 684, 689
SspMI	CTAG	3 cut(s)	339, 531, 573
SstI	GAGCTC	2 cut(s)	588, 640
StyD4I	CCNGG	4 cut(s)	132, 485, 664, 725
TaaI	ACNGT	2 cut(s)	210, 580
TaiI	ACGT	3 cut(s)	237, 300, 651
TasI	AATT	5 cut(s)	288, 325, 421, 566, 842
TauI	GCSGC	3 cut(s)	460, 686, 691
TfiI	GAWTC	5 cut(s)	29, 75, 126, 181, 652
Tru1I	TTAA	2 cut(s)	159, 287
Tru9I	TTAA	2 cut(s)	159, 287
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	3 cut(s)	824, 827, 830
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	3 cut(s)	188, 490, 551
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	360, 723
XapI	RAATTY	1 cut(s)	421
XhoI	CTCGAG	4 cut(s)	70, 257, 264, 587
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	3 cut(s)	339, 531, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.