Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002160.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

59408 .. 63213

Gene Structure 3806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggggagcggtgaaggggagcagcgacgatgtgagggagagagatgcttgcgtgctgatacgtctatgatggggagcagcgacgatgcggcagtgacggggagctgcgaggatgcggcggtgcgggtgaatctaagaaagttgaagtatattgataacttccatcaatttgatctacattttaagaagcattgcgaggagggcaaattaccaaactatacggttgtggaacaaagattcttcgatctattgtccctccctgccaacgatgatcacccgtctcatgacgtctcagagggccagaaatttgtaaagcaagtgtacgaagcattacgatcaagtcctcagtggaatgaaatgttgttcataattgtatacgacgagcatggcggattctatgatcatgttccgacgcctgttaaagatgttcctagtcctgatgacatcgccggtcctgcgccctactactttaaattcaatcgtcttggtgttagggttccggccttcctgatttctccctggattgagcgtgcaacagtgttgcatggaccttcggggccatatccttcatcagagtttgagcactcctcaattgcagcaactgttaagaagattttcaatctaaaagagtttctcacaaagcgtgatgcttgggcaggaacctttgatgttattttgactagaacaactccaagaactgattgcccagttaccttgcccgaaccgatgaaactacgagaagctggatctaaagatgatgcaaaaatcagtgacttccaagaagaactagtgcaattggctgcagcactaaatggggatcacaagaaggatatatatccccacaaattagtggagaacatgactgtttcagaggctctcaaatatgtggaaggtgcgtttaaaatgtttcaagatgaatgccaaaaagcccgggaaaatggaaccgacgaatcccagattattgtctgcgcaacctctcctacgccacaatcaacaaagtcgtttgttcataagatgttctcttgtttgatctgtgataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009405 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030054 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034480 GO:0035821 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0050896 GO:0051701 GO:0051704 GO:0051716 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0052642 GO:0055044 GO:0071496 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

347

Amino Acids

39.09

Weight (kDa)

5.5

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphoesterase	PF04185	42 - 209	1.2e-51	Phosphoesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
Acc16I	TGCGCA	1 cut(s)	970
AccBSI	CCGCTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	375
AciI	CCGC	6 cut(s)	9, 89, 116, 119, 124, 390
AclWI	GGATC	2 cut(s)	754, 825
AcsI	RAATTY	2 cut(s)	305, 473
AcyI	GRCGYC	2 cut(s)	288, 413
AfaI	GTAC	1 cut(s)	323
AgsI	TTSAA	4 cut(s)	145, 478, 619, 911
AhlI	ACTAGT	1 cut(s)	787
AjnI	CCWGG	1 cut(s)	518
AluBI	AGCT	2 cut(s)	105, 743
AluI	AGCT	2 cut(s)	105, 743
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	285, 295
AlwI	GGATC	2 cut(s)	754, 825
AlwNI	CAGNNNCTG	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	930
AoxI	GGCC	3 cut(s)	298, 501, 557
ApeKI	GCWGC	6 cut(s)	22, 78, 105, 596, 800, 803
ApoI	RAATTY	2 cut(s)	305, 473
Asp700I	GAANNNNTTC	1 cut(s)	614
AspLEI	GCGC	2 cut(s)	460, 971
AspS9I	GGNCC	4 cut(s)	298, 452, 548, 557
AsuC2I	CCSGG	2 cut(s)	931, 932
AsuHPI	GGTGA	3 cut(s)	23, 139, 266
AvaI	CYCGRG	1 cut(s)	930
AvaII	GGWCC	2 cut(s)	452, 548
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	6 cut(s)	34, 90, 92, 608, 787, 815
BccI	CCATC	2 cut(s)	64, 171
BciT130I	CCWGG	1 cut(s)	520
BclI	TGATCA	2 cut(s)	271, 400
BcnI	CCSGG	2 cut(s)	931, 932
BcoDI	GTCTC	2 cut(s)	285, 295
BcuI	ACTAGT	1 cut(s)	787
BfaI	CTAG	3 cut(s)	432, 681, 788
BfmI	CTRYAG	1 cut(s)	801
BisI	GCNGC	8 cut(s)	23, 79, 90, 106, 117, 597, 801, 804
BlsI	GCNGC	8 cut(s)	24, 80, 91, 107, 118, 598, 802, 805
Bme1390I	CCNGG	3 cut(s)	520, 931, 932
Bme18I	GGWCC	2 cut(s)	452, 548
BmeT110I	CYCGRG	1 cut(s)	930
BmgT120I	GGNCC	4 cut(s)	298, 452, 548, 557
BmiI	GGNNCC	4 cut(s)	498, 558, 661, 943
BmrFI	CCNGG	3 cut(s)	520, 931, 932
BmrI	ACTGGG	1 cut(s)	701
BmsI	GCATC	5 cut(s)	35, 76, 103, 637, 748
BmuI	ACTGGG	1 cut(s)	701
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpuMI	CCSGG	2 cut(s)	931, 932
BsaBI	GATNNNNATC	1 cut(s)	834
BsaHI	GRCGYC	2 cut(s)	288, 413
BsaJI	CCNNGG	2 cut(s)	518, 930
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	707
Bse3DI	GCAATG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	520
BseDI	CCNNGG	2 cut(s)	518, 930
BseGI	GGATG	1 cut(s)	118
BseJI	GATNNNNATC	1 cut(s)	834
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	306, 359
BseNI	ACTGG	1 cut(s)	707
BseRI	GAGGAG	2 cut(s)	212, 577
BseXI	GCAGC	6 cut(s)	34, 90, 92, 608, 787, 815
BshFI	GGCC	3 cut(s)	300, 503, 559
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	930
BsiSI	CCGG	3 cut(s)	450, 500, 931
BslFI	GGGAC	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	285, 295
BsmBI	CGTCTC	2 cut(s)	285, 295
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	3 cut(s)	300, 503, 559
BsoBI	CYCGRG	1 cut(s)	930
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	8 cut(s)	172, 244, 271, 335, 400, 746, 817, 1029
BspACI	CCGC	6 cut(s)	9, 89, 116, 119, 124, 390
BspANI	GGCC	3 cut(s)	300, 503, 559
BspCNI	CTCAG	2 cut(s)	305, 358
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	4 cut(s)	498, 558, 661, 943
BspMAI	CTGCAG	1 cut(s)	805
BspPI	GGATC	2 cut(s)	754, 825
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	707
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	518, 930
BssMI	GATC	8 cut(s)	172, 244, 271, 335, 400, 746, 817, 1029
BssNAI	GTATAC	1 cut(s)	376
BssNI	GRCGYC	2 cut(s)	288, 413
Bst1107I	GTATAC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	4 cut(s)	223, 538, 604, 865
BstACI	GRCGYC	2 cut(s)	288, 413
BstC8I	GCNNGC	3 cut(s)	50, 54, 531
BstDEI	CTNAG	3 cut(s)	134, 292, 345
BstF5I	GGATG	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	460, 971
BstKTI	GATC	8 cut(s)	175, 247, 274, 338, 403, 749, 820, 1032
BstMAI	GTCTC	2 cut(s)	285, 295
BstMBI	GATC	8 cut(s)	172, 244, 271, 335, 400, 746, 817, 1029
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 455
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	3 cut(s)	518, 929, 930
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	6 cut(s)	34, 90, 92, 608, 787, 815
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
BstZ17I	GTATAC	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	300, 503, 559
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	4 cut(s)	99, 353, 543, 775
Cac8I	GCNNGC	3 cut(s)	50, 54, 531
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	2 cut(s)	460, 971
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	4 cut(s)	298, 452, 548, 557
Cfr9I	CCCGGG	1 cut(s)	930
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	5 cut(s)	284, 386, 404, 545, 859
CviJI	RGCY	8 cut(s)	105, 300, 503, 559, 743, 800, 875, 929
CviKI_1	RGCY	8 cut(s)	105, 300, 503, 559, 743, 800, 875, 929
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	134, 292, 345
DpnI	GATC	8 cut(s)	174, 246, 273, 337, 402, 748, 819, 1031
DpnII	GATC	8 cut(s)	172, 244, 271, 335, 400, 746, 817, 1029
DraI	TTTAAA	2 cut(s)	472, 901
EciI	GGCGGA	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	452, 548
Eco88I	CYCGRG	1 cut(s)	930
EcoRII	CCWGG	1 cut(s)	518
Esp3I	CGTCTC	2 cut(s)	285, 295
FaeI	CATG	5 cut(s)	287, 389, 407, 548, 862
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	5 cut(s)	283, 385, 403, 544, 858
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	2 cut(s)	271, 400
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	8 cut(s)	23, 79, 90, 106, 117, 597, 801, 804
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	8 cut(s)	23, 79, 90, 106, 117, 597, 801, 804
FspBI	CTAG	3 cut(s)	432, 681, 788
FspI	TGCGCA	1 cut(s)	970
GlaI	GCGC	2 cut(s)	459, 970
GluI	GCNGC	8 cut(s)	23, 79, 90, 106, 117, 597, 801, 804
HaeIII	GGCC	3 cut(s)	300, 503, 559
HapII	CCGG	3 cut(s)	450, 500, 931
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	2 cut(s)	460, 971
Hin1I	GRCGYC	2 cut(s)	288, 413
Hin1II	CATG	5 cut(s)	287, 389, 407, 548, 862
Hin6I	GCGC	2 cut(s)	458, 969
HinP1I	GCGC	2 cut(s)	458, 969
HinfI	GANTC	4 cut(s)	130, 237, 393, 950
HpaII	CCGG	3 cut(s)	450, 500, 931
HphI	GGTGA	3 cut(s)	23, 139, 266
Hpy166II	GTNNAC	2 cut(s)	322, 376
Hpy188I	TCNGA	4 cut(s)	295, 411, 574, 871
Hpy188III	TCNNGA	4 cut(s)	284, 437, 508, 911
Hpy8I	GTNNAC	2 cut(s)	322, 376
Hpy99I	CGWCG	5 cut(s)	30, 86, 383, 415, 950
HpyAV	CCTTC	6 cut(s)	8, 514, 561, 576, 820, 884
HpyCH4III	ACNGT	4 cut(s)	223, 538, 604, 865
HpyCH4IV	ACGT	2 cut(s)	62, 288
HpyCH4V	TGCA	6 cut(s)	533, 544, 596, 761, 793, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 455
HpyF3I	CTNAG	3 cut(s)	134, 292, 345
HpySE526I	ACGT	2 cut(s)	62, 288
Hsp92I	GRCGYC	2 cut(s)	288, 413
Hsp92II	CATG	5 cut(s)	287, 389, 407, 548, 862
HspAI	GCGC	2 cut(s)	458, 969
Ksp22I	TGATCA	2 cut(s)	271, 400
Kzo9I	GATC	8 cut(s)	172, 244, 271, 335, 400, 746, 817, 1029
LmnI	GCTCC	4 cut(s)	6, 19, 75, 102
Lsp1109I	GCAGC	6 cut(s)	34, 90, 92, 608, 787, 815
LweI	GCATC	5 cut(s)	35, 76, 103, 637, 748
MaeI	CTAG	3 cut(s)	432, 681, 788
MaeII	ACGT	2 cut(s)	62, 288
MaeIII	GTNAC	3 cut(s)	94, 709, 770
MalI	GATC	8 cut(s)	174, 246, 273, 337, 402, 748, 819, 1031
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	8 cut(s)	172, 244, 271, 335, 400, 746, 817, 1029
MboII	GAAGA	3 cut(s)	232, 622, 794
MfeI	CAATTG	2 cut(s)	591, 794
MflI	RGATCY	1 cut(s)	746
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	9 cut(s)	167, 206, 305, 369, 473, 591, 794, 845, 1039
MmeI	TCCRAC	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	5 cut(s)	183, 420, 471, 606, 900
MspI	CCGG	3 cut(s)	450, 500, 931
MspR9I	CCNGG	3 cut(s)	520, 931, 932
MunI	CAATTG	2 cut(s)	591, 794
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	2 cut(s)	201, 455
NciI	CCSGG	2 cut(s)	931, 932
NdeII	GATC	8 cut(s)	172, 244, 271, 335, 400, 746, 817, 1029
NlaIII	CATG	5 cut(s)	287, 389, 407, 548, 862
NlaIV	GGNNCC	4 cut(s)	498, 558, 661, 943
NmuCI	GTSAC	2 cut(s)	94, 770
NsbI	TGCGCA	1 cut(s)	970
PagI	TCATGA	1 cut(s)	283
PctI	GAATGC	1 cut(s)	923
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	4 cut(s)	130, 237, 393, 950
PkrI	GCNGC	8 cut(s)	24, 80, 91, 107, 118, 598, 802, 805
Psp6I	CCWGG	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	4 cut(s)	498, 558, 661, 943
PspPI	GGNCC	4 cut(s)	298, 452, 548, 557
PstI	CTGCAG	1 cut(s)	805
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	746
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	5 cut(s)	183, 420, 471, 606, 900
SatI	GCNGC	8 cut(s)	23, 79, 90, 106, 117, 597, 801, 804
Sau3AI	GATC	8 cut(s)	172, 244, 271, 335, 400, 746, 817, 1029
Sau96I	GGNCC	4 cut(s)	298, 452, 548, 557
ScrFI	CCNGG	3 cut(s)	520, 931, 932
SduI	GDGCHC	1 cut(s)	585
SetI	ASST	9 cut(s)	65, 107, 291, 553, 665, 716, 745, 895, 977
SfaNI	GCATC	5 cut(s)	35, 76, 103, 637, 748
SfcI	CTRYAG	1 cut(s)	801
SinI	GGWCC	2 cut(s)	452, 548
SmaI	CCCGGG	1 cut(s)	932
SpeI	ACTAGT	1 cut(s)	787
Sse9I	AATT	9 cut(s)	167, 206, 305, 369, 473, 591, 794, 845, 1039
SsiI	CCGC	6 cut(s)	9, 89, 116, 119, 124, 390
SspMI	CTAG	3 cut(s)	432, 681, 788
StyD4I	CCNGG	3 cut(s)	518, 929, 930
TaaI	ACNGT	4 cut(s)	223, 538, 604, 865
TaiI	ACGT	2 cut(s)	65, 291
TaqI	TCGA	1 cut(s)	243
TasI	AATT	9 cut(s)	167, 206, 305, 369, 473, 591, 794, 845, 1039
TauI	GCSGC	2 cut(s)	92, 119
TfiI	GAWTC	4 cut(s)	130, 237, 393, 950
Tru1I	TTAA	5 cut(s)	183, 420, 471, 606, 900
Tru9I	TTAA	5 cut(s)	183, 420, 471, 606, 900
TscAI	CASTG	4 cut(s)	99, 353, 543, 775
TseFI	GTSAC	2 cut(s)	94, 770
TseI	GCWGC	6 cut(s)	22, 78, 105, 596, 800, 803
Tsp45I	GTSAC	2 cut(s)	94, 770
TspDTI	ATGAA	6 cut(s)	355, 369, 558, 743, 930, 998
TspMI	CCCGGG	1 cut(s)	930
TspRI	CASTG	4 cut(s)	99, 353, 543, 775
VpaK11BI	GGWCC	2 cut(s)	452, 548
XapI	RAATTY	2 cut(s)	305, 473
XmaI	CCCGGG	1 cut(s)	930
XmiI	GTMKAC	1 cut(s)	375
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	3 cut(s)	432, 681, 788
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.