Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25924 .. 26307

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgtttgctggaatgatatttcgcaaggagcctttcttttatggtcacgacaaccatgatcagctggtcaaaattgccaaggtacttgggactgatgagttgaatgcatgtgtgaacaaatatcatttagaggtttatcctcaactggatgcgctggttagcaggaagccgtggtcgaagtttattaatgcagacaatcagcatctagtttctccagaggccattgattttctggataaactccttcggtttgatcatcaagacaggctaactgcatgcaaaagaagccattggccatccatatttctcccaagtgagggcagcagaaagcagcaggatgcagacacaatagctttgatgatatcaagtcccatgtacgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

127

Amino Acids

14.72

Weight (kDa)

6.28

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	293
AfaI	GTAC	2 cut(s)	84, 377
AfiI	CCNNNNNNNGG	2 cut(s)	316, 317
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	2 cut(s)	64, 353
AluI	AGCT	2 cut(s)	64, 353
AoxI	GGCC	2 cut(s)	219, 293
ApeKI	GCWGC	2 cut(s)	321, 331
AseI	ATTAAT	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	333, 343
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	154
BclI	TGATCA	2 cut(s)	58, 253
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	2 cut(s)	322, 332
BlsI	GCNGC	2 cut(s)	323, 333
BmiI	GGNNCC	1 cut(s)	30
BmsI	GCATC	3 cut(s)	139, 211, 328
BpmI	CTGGAG	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	78, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 317
Bse1I	ACTGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	78, 170
BseGI	GGATG	3 cut(s)	154, 296, 343
BseLI	CCNNNNNNNGG	2 cut(s)	316, 317
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	333, 343
BshFI	GGCC	2 cut(s)	221, 295
BslFI	GGGAC	2 cut(s)	103, 354
BslI	CCNNNNNNNGG	2 cut(s)	316, 317
BsmFI	GGGAC	2 cut(s)	103, 354
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	221, 295
Bsp143I	GATC	2 cut(s)	58, 253
BspANI	GGCC	2 cut(s)	221, 295
BspLI	GGNNCC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	78, 170
BssMI	GATC	2 cut(s)	58, 253
BssT1I	CCWWGG	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	277
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	154, 296, 343
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	61, 256
BstMBI	GATC	2 cut(s)	58, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	111, 279
BstV1I	GCAGC	2 cut(s)	333, 343
BsuRI	GGCC	2 cut(s)	221, 295
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	154, 296, 343
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	83, 376
CviAII	CATG	4 cut(s)	56, 108, 276, 373
CviJI	RGCY	8 cut(s)	31, 64, 169, 221, 268, 288, 295, 353
CviKI_1	RGCY	8 cut(s)	31, 64, 169, 221, 268, 288, 295, 353
CviQI	GTAC	2 cut(s)	83, 376
DpnI	GATC	2 cut(s)	60, 255
DpnII	GATC	2 cut(s)	58, 253
EaeI	YGGCCR	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	363
EcoRV	GATATC	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	4 cut(s)	59, 111, 279, 376
FaiI	YATR	6 cut(s)	42, 57, 109, 277, 302, 374
FaqI	GGGAC	2 cut(s)	103, 354
FatI	CATG	4 cut(s)	55, 107, 275, 372
FbaI	TGATCA	2 cut(s)	58, 253
Fnu4HI	GCNGC	2 cut(s)	322, 332
FokI	GGATG	3 cut(s)	161, 283, 350
Fsp4HI	GCNGC	2 cut(s)	322, 332
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	322, 332
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	221, 295
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	4 cut(s)	59, 111, 279, 376
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188III	TCNNGA	4 cut(s)	47, 215, 233, 260
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	254
HpyCH4V	TGCA	5 cut(s)	107, 191, 275, 279, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	59, 111, 279, 376
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	2 cut(s)	58, 253
Kzo9I	GATC	2 cut(s)	58, 253
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	8 cut(s)	50, 131, 140, 148, 218, 228, 250, 320
Lsp1109I	GCAGC	2 cut(s)	333, 343
LweI	GCATC	3 cut(s)	139, 211, 328
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	60, 255
MboI	GATC	2 cut(s)	58, 253
MlsI	TGGCCA	1 cut(s)	295
MluCI	AATT	1 cut(s)	72
MluNI	TGGCCA	1 cut(s)	295
MnlI	CCTC	4 cut(s)	124, 150, 211, 310
Mox20I	TGGCCA	1 cut(s)	295
Mph1103I	ATGCAT	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	295
MseI	TTAA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeII	GATC	2 cut(s)	58, 253
NlaIII	CATG	4 cut(s)	59, 111, 279, 376
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	2 cut(s)	111, 279
PaeI	GCATGC	1 cut(s)	279
PctI	GAATGC	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	323, 333
PshBI	ATTAAT	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	2 cut(s)	84, 377
RsaNI	GTAC	2 cut(s)	83, 376
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	322, 332
Sau3AI	GATC	2 cut(s)	58, 253
SetI	ASST	4 cut(s)	66, 84, 135, 355
SfaNI	GCATC	3 cut(s)	139, 211, 328
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	1 cut(s)	72
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	78
TaqI	TCGA	1 cut(s)	176
TasI	AATT	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	321, 331
Tsp45I	GTSAC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	186
XceI	RCATGY	2 cut(s)	111, 279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.