Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002180.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

110196 .. 113881

Gene Structure 3686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgttagtagcatcgtttgcggaagttatccgaactcccatgaccgtagtcatcaagggaagatgcagacatcagggggagatgtctacatgtatgattgtccttgggacgttaaagagacagtctccggactttaaatgggttgtcctcgggacgttaaacaatgagtcgccgaactttaaatgggttgtcctcgggacgttaaagaatgagtccccggactttaaatgggtccttaatttctcccatagtggattgcaagatggatgcgtcaagggcttctcagagattgaaggaggaagatttttgttaggtaatcttcctccagaatttttgtgcaccaactggtcacaaagttgggatgatcctgtaccagcgaaatctgccagcttgaatacctcgcctcctgatggcaacccctccaacgtgccagtatcctcaggaaacatgttcatgaaacagatctcgtggcctgcaggaatgacatttaaggctcatgcagaaccacaagtggaagaatcaaatacctatgaaaatgctagtcaattgtcgctggccacgttcacatccctgctgatagaatttgttgcaaggcttcaaaatcttgtcgactcgtttgaggaattgggtgagagttctgactatatactatgtcacaatgaggagacgatcgagaatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

227

Amino Acids

25.18

Weight (kDa)

4.85

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	145 - 210	7.4e-12	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	86, 609
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	2 cut(s)	329, 581
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflIII	ACRYGT	2 cut(s)	89, 447
AgsI	TTSAA	3 cut(s)	293, 394, 599
AluBI	AGCT	1 cut(s)	390
AluI	AGCT	1 cut(s)	390
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	3 cut(s)	112, 129, 659
Alw44I	GTGCAC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	359
Ama87I	CYCGRG	2 cut(s)	149, 194
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	2 cut(s)	470, 555
ApaLI	GTGCAC	1 cut(s)	337
ApoI	RAATTY	2 cut(s)	329, 581
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	641
AvaI	CYCGRG	2 cut(s)	149, 194
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	557
BauI	CACGAG	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	341
BccI	CCATC	2 cut(s)	257, 404
BciVI	GTATCC	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	3 cut(s)	112, 129, 659
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	474
BfuI	GTATCC	1 cut(s)	445
BglII	AGATCT	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	2 cut(s)	149, 194
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	3 cut(s)	20, 53, 257
BoxI	GACNNNNGTC	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	4 cut(s)	103, 148, 193, 216
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	350, 431
Bse21I	CCTNAGG	1 cut(s)	439
BseAI	TCCGGA	1 cut(s)	127
BseDI	CCNNGG	4 cut(s)	103, 148, 193, 216
BseGI	GGATG	3 cut(s)	272, 367, 566
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	297, 453
BseNI	ACTGG	2 cut(s)	350, 431
BseRI	GAGGAG	1 cut(s)	677
BseSI	GKGCMC	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	672
BshFI	GGCC	2 cut(s)	472, 557
BsiEI	CGRYCG	1 cut(s)	672
BsiHKAI	GWGCWC	1 cut(s)	341
BsiHKCI	CYCGRG	2 cut(s)	149, 194
BsiSI	CCGG	2 cut(s)	128, 218
BslFI	GGGAC	4 cut(s)	121, 166, 199, 211
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	3 cut(s)	112, 129, 659
BsmBI	CGTCTC	1 cut(s)	659
BsmFI	GGGAC	4 cut(s)	121, 166, 199, 211
BsnI	GGCC	2 cut(s)	472, 557
BsoBI	CYCGRG	2 cut(s)	149, 194
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	364, 462, 669
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	472, 557
BspCNI	CTCAG	2 cut(s)	296, 452
BspEI	TCCGGA	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	233
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	350, 431
BssECI	CCNNGG	4 cut(s)	103, 148, 193, 216
BssMI	GATC	3 cut(s)	364, 462, 669
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	466
Bst4CI	ACNGT	2 cut(s)	46, 123
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	388, 474, 555
BstDEI	CTNAG	2 cut(s)	283, 439
BstF5I	GGATG	3 cut(s)	272, 367, 566
BstKTI	GATC	3 cut(s)	367, 465, 672
BstMAI	GTCTC	3 cut(s)	112, 129, 659
BstMBI	GATC	3 cut(s)	364, 462, 669
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 276, 383
BstNSI	RCATGY	2 cut(s)	93, 451
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
Bsu36I	CCTNAGG	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	472, 557
BtsCI	GGATG	3 cut(s)	272, 367, 566
Cac8I	GCNNGC	3 cut(s)	388, 474, 555
CciI	TCATGA	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	5 cut(s)	40, 90, 448, 454, 497
CviJI	RGCY	6 cut(s)	279, 390, 472, 494, 557, 595
CviKI_1	RGCY	6 cut(s)	279, 390, 472, 494, 557, 595
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	283, 439
DpnI	GATC	3 cut(s)	366, 464, 671
DpnII	GATC	3 cut(s)	364, 462, 669
DraI	TTTAAA	3 cut(s)	136, 181, 226
EaeI	YGGCCR	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	232
Eco81I	CCTNAGG	1 cut(s)	439
Eco88I	CYCGRG	2 cut(s)	149, 194
EcoO109I	RGGNCCY	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	5 cut(s)	43, 93, 451, 457, 500
FaqI	GGGAC	4 cut(s)	121, 166, 199, 211
FatI	CATG	5 cut(s)	39, 89, 447, 453, 496
FblI	GTMKAC	2 cut(s)	86, 609
FokI	GGATG	3 cut(s)	279, 374, 553
FspBI	CTAG	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	472, 557
HapII	CCGG	2 cut(s)	128, 218
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	5 cut(s)	43, 93, 451, 457, 500
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	167, 212, 518, 611
HpaII	CCGG	2 cut(s)	128, 218
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	4 cut(s)	87, 339, 564, 610
Hpy188I	TCNGA	3 cut(s)	32, 286, 640
Hpy188III	TCNNGA	8 cut(s)	128, 151, 196, 326, 407, 441, 454, 673
Hpy8I	GTNNAC	4 cut(s)	87, 339, 564, 610
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	2 cut(s)	46, 123
HpyCH4IV	ACGT	5 cut(s)	110, 155, 200, 426, 560
HpyCH4V	TGCA	6 cut(s)	66, 259, 339, 476, 500, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 276, 383
HpyF3I	CTNAG	2 cut(s)	283, 439
HpySE526I	ACGT	5 cut(s)	110, 155, 200, 426, 560
Hsp92II	CATG	5 cut(s)	43, 93, 451, 457, 500
Kpn2I	TCCGGA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	364, 462, 669
LweI	GCATC	3 cut(s)	20, 53, 257
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	5 cut(s)	110, 155, 200, 426, 560
MaeIII	GTNAC	2 cut(s)	348, 653
MalI	GATC	3 cut(s)	366, 464, 671
MboI	GATC	3 cut(s)	364, 462, 669
MboII	GAAGA	4 cut(s)	72, 311, 312, 527
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	5 cut(s)	238, 329, 545, 581, 623
MluNI	TGGCCA	1 cut(s)	557
MlyI	GAGTC	3 cut(s)	176, 221, 605
MmeI	TCCRAC	1 cut(s)	447
Mox20I	TGGCCA	1 cut(s)	557
MroI	TCCGGA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	8 cut(s)	113, 135, 158, 180, 203, 225, 237, 489
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	557
MspI	CCGG	2 cut(s)	128, 218
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	545
MwoI	GCNNNNNNNGC	3 cut(s)	17, 276, 383
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	364, 462, 669
NlaIII	CATG	5 cut(s)	43, 93, 451, 457, 500
NlaIV	GGNNCC	1 cut(s)	233
NmuCI	GTSAC	2 cut(s)	348, 653
NspI	RCATGY	2 cut(s)	93, 451
PagI	TCATGA	1 cut(s)	453
PciI	ACATGT	2 cut(s)	89, 447
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	518
Ple19I	CGATCG	1 cut(s)	672
PleI	GAGTC	3 cut(s)	175, 220, 605
PpsI	GAGTC	3 cut(s)	175, 220, 605
PpuMI	RGGWCCY	1 cut(s)	232
PscI	ACATGT	2 cut(s)	89, 447
PshAI	GACNNNNGTC	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	462
PvuI	CGATCG	1 cut(s)	672
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	452
SalI	GTCGAC	1 cut(s)	608
SaqAI	TTAA	8 cut(s)	113, 135, 158, 180, 203, 225, 237, 489
Sau3AI	GATC	3 cut(s)	364, 462, 669
Sau96I	GGNCC	1 cut(s)	232
SbfI	CCTGCAGG	1 cut(s)	478
SchI	GAGTC	3 cut(s)	176, 221, 605
ScrFI	CCNGG	1 cut(s)	218
SdaI	CCTGCAGG	1 cut(s)	478
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	9 cut(s)	113, 158, 203, 316, 392, 401, 429, 530, 563
SfaNI	GCATC	3 cut(s)	20, 53, 257
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	452
Sse8387I	CCTGCAGG	1 cut(s)	478
Sse9I	AATT	5 cut(s)	238, 329, 545, 581, 623
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	46, 123
TaiI	ACGT	5 cut(s)	113, 158, 203, 429, 563
TaqI	TCGA	2 cut(s)	609, 672
TasI	AATT	5 cut(s)	238, 329, 545, 581, 623
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	8 cut(s)	113, 135, 158, 180, 203, 225, 237, 489
Tru9I	TTAA	8 cut(s)	113, 135, 158, 180, 203, 225, 237, 489
TseFI	GTSAC	2 cut(s)	348, 653
Tsp45I	GTSAC	2 cut(s)	348, 653
TspDTI	ATGAA	3 cut(s)	442, 470, 546
VneI	GTGCAC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	329, 581
XceI	RCATGY	2 cut(s)	93, 451
XmiI	GTMKAC	2 cut(s)	86, 609
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.