Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002187.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

74913 .. 78465

Gene Structure 3553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002187.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgttgctcctgagtcctgaatggttcaaaagtatgcctgtcacagtgaaggttgatgtttatagctacggcattgtgttgttggagattgtttgctgcaggaaaaactacgaaccagaagcaccagctgaagatcaaatgatattagccgattgggcatacgattgctataagcaaaagcaaaagaaactgcatctgttgtggcagaatgtaggcgacgatcaggaaatggatggcatcgaaaagttggagaagtatttgatgattgcattttggtgcattcaagaggatccatcagtaaggcctaccataaagaaagtgacacagatgctcgaagggactgttgaaatctcggtgcctccaaatctgtcctcattatatgcaaaggcaaagccgccaccagaccagtcttctttggcgcgcggaagctcagactcgtggcctctgttttcctcctctgcgtcgtcgttttgtttcctccaggctcagctttctgatgattctatgataattggttttatagaggtgaatcgagcactgatgtctgggcgtggaaatggaggcaaggttttgggtaagggaggagcaaaacgacatcgtaaggtcttccgcgatagcatcaagggcaccaagctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

212

Amino Acids

23.82

Weight (kDa)

8.19

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	355, 626
AccII	CGCG	3 cut(s)	421, 423, 612
AciI	CCGC	3 cut(s)	395, 423, 610
AclWI	GGATC	2 cut(s)	284, 297
AcuI	CTGAAG	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	28, 284, 347
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	5 cut(s)	66, 128, 429, 490, 634
AluI	AGCT	5 cut(s)	66, 128, 429, 490, 634
Alw21I	GWGCWC	1 cut(s)	538
AlwI	GGATC	2 cut(s)	284, 297
AoxI	GGCC	2 cut(s)	302, 440
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	421, 423
AsuHPI	GGTGA	1 cut(s)	538
BaeGI	GKGCMC	1 cut(s)	629
BamHI	GGATCC	1 cut(s)	289
BanI	GGYRCC	2 cut(s)	355, 626
BauI	CACGAG	1 cut(s)	436
BbsI	GAAGAC	2 cut(s)	402, 598
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	2 cut(s)	227, 301
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	97
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	2 cut(s)	97, 395
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	2 cut(s)	98, 396
Bme1390I	CCNGG	1 cut(s)	482
BmiI	GGNNCC	3 cut(s)	291, 357, 628
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	4 cut(s)	202, 246, 318, 627
BpiI	GAAGAC	2 cut(s)	402, 598
BpmI	CTGGAG	1 cut(s)	464
Bpu1102I	GCTNAGC	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	444, 500
BseNI	ACTGG	1 cut(s)	406
BsePI	GCGCGC	1 cut(s)	419
BseRI	GAGGAG	2 cut(s)	445, 597
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	83
Bsh1236I	CGCG	3 cut(s)	421, 423, 612
BshFI	GGCC	2 cut(s)	304, 442
BshNI	GGYRCC	2 cut(s)	355, 626
BsiHKAI	GWGCWC	1 cut(s)	538
BslFI	GGGAC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	304, 442
Bsp1286I	GDGCHC	2 cut(s)	538, 629
Bsp143I	GATC	3 cut(s)	133, 220, 289
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	3 cut(s)	395, 423, 610
BspANI	GGCC	2 cut(s)	304, 442
BspCNI	CTCAG	2 cut(s)	443, 499
BspFNI	CGCG	3 cut(s)	421, 423, 612
BspLI	GGNNCC	3 cut(s)	291, 357, 628
BspMAI	CTGCAG	1 cut(s)	101
BspPI	GGATC	2 cut(s)	284, 297
BspT107I	GGYRCC	2 cut(s)	355, 626
BsrI	ACTGG	1 cut(s)	406
BssHII	GCGCGC	1 cut(s)	419
BssMI	GATC	3 cut(s)	133, 220, 289
BssSI	CACGAG	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	46, 343
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	3 cut(s)	11, 430, 486
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	3 cut(s)	421, 423, 612
BstHHI	GCGC	2 cut(s)	421, 423
BstKTI	GATC	3 cut(s)	136, 223, 292
BstMBI	GATC	3 cut(s)	133, 220, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 624
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	629
BstUI	CGCG	3 cut(s)	421, 423, 612
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	2 cut(s)	402, 598
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	304, 442
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	51, 536
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	2 cut(s)	421, 423
CseI	GACGC	1 cut(s)	450
DdeI	CTNAG	3 cut(s)	11, 430, 486
DpnI	GATC	3 cut(s)	135, 222, 291
DpnII	GATC	3 cut(s)	133, 220, 289
Eco147I	AGGCCT	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	480
FaiI	YATR	9 cut(s)	35, 63, 160, 171, 311, 379, 381, 506, 521
FaqI	GGGAC	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	97, 395
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	97, 395
GlaI	GCGC	2 cut(s)	420, 422
GluI	GCNGC	2 cut(s)	97, 395
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	304, 442
HgaI	GACGC	1 cut(s)	450
HhaI	GCGC	2 cut(s)	421, 423
Hin6I	GCGC	2 cut(s)	419, 421
HinP1I	GCGC	2 cut(s)	419, 421
HinfI	GANTC	4 cut(s)	13, 434, 500, 529
HphI	GGTGA	1 cut(s)	538
Hpy188I	TCNGA	2 cut(s)	433, 496
Hpy188III	TCNNGA	4 cut(s)	10, 17, 224, 284
Hpy99I	CGWCG	3 cut(s)	221, 466, 469
HpyAV	CCTTC	2 cut(s)	43, 329
HpyCH4III	ACNGT	2 cut(s)	46, 343
HpyCH4V	TGCA	5 cut(s)	99, 193, 269, 279, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 624
HpyF3I	CTNAG	3 cut(s)	11, 430, 486
HspAI	GCGC	2 cut(s)	419, 421
Kzo9I	GATC	3 cut(s)	133, 220, 289
LmnI	GCTCC	2 cut(s)	12, 584
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	4 cut(s)	202, 246, 318, 627
MaeIII	GTNAC	2 cut(s)	40, 319
MalI	GATC	3 cut(s)	135, 222, 291
MboI	GATC	3 cut(s)	133, 220, 289
MboII	GAAGA	3 cut(s)	143, 402, 598
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	538, 629
MluCI	AATT	1 cut(s)	510
MlyI	GAGTC	2 cut(s)	22, 428
MmeI	TCCRAC	2 cut(s)	63, 228
MslI	CAYNNNNRTG	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	3 cut(s)	421, 423, 612
MwoI	GCNNNNNNNGC	2 cut(s)	155, 624
NdeII	GATC	3 cut(s)	133, 220, 289
NlaIV	GGNNCC	3 cut(s)	291, 357, 628
NmuCI	GTSAC	2 cut(s)	40, 319
PauI	GCGCGC	1 cut(s)	419
PceI	AGGCCT	1 cut(s)	304
PctI	GAATGC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	500, 529
PkrI	GCNGC	2 cut(s)	98, 396
PleI	GAGTC	2 cut(s)	21, 428
PpsI	GAGTC	2 cut(s)	21, 428
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	3 cut(s)	291, 357, 628
PstI	CTGCAG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	289
PteI	GCGCGC	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	274
SatI	GCNGC	2 cut(s)	97, 395
Sau3AI	GATC	3 cut(s)	133, 220, 289
SchI	GAGTC	2 cut(s)	22, 428
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	538, 629
SetI	ASST	9 cut(s)	54, 68, 130, 431, 492, 528, 570, 606, 636
SfaNI	GCATC	4 cut(s)	202, 246, 318, 627
SfcI	CTRYAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	510
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	3 cut(s)	395, 423, 610
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	46, 343
TaqI	TCGA	3 cut(s)	240, 333, 532
TasI	AATT	1 cut(s)	510
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	500, 529
TscAI	CASTG	2 cut(s)	51, 543
TseFI	GTSAC	2 cut(s)	40, 319
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	2 cut(s)	40, 319
TspRI	CASTG	2 cut(s)	51, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.