Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002194.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

112166 .. 113765

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgagtactttcctcaggaggcaatggccaaaaccagcagaaggattcaaaatagaagaggaagctgggaggattaacactattgatcaaggaactgagggtgctgaactggggcttaaaattattgctctggaagacgggagttaccctggtactggaaaatttgatgagataggtcgcggagatggcgaaggaacgacactaaatcttcctctaccaggtggctcaggtgatactgccatgagaactgtgtttgatgaagtaattgtgccatgtgctcaaaggtttaagccagatattattctcgtctctgctgggtatgatgcgcatgcattggatccacttgcaagtttgcaatttacaactggaacatattacatgctagcatctagcattcaacaacttgccaaggatatttgtggtggtcgatgcgtgtttttcttagaaggaggatataatctcgactctctttcatattccgttgcagattcatttcgtgcttttcttaatgagccaagtttggcgtctacgtttgacaaccctgccatgttgtatgaagagccatcaatgaaggttaagcaggcaattcagagggttaaacatttacattctttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

205

Amino Acids

22.36

Weight (kDa)

4.81

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	46 - 166	5.4e-36	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	527
AccII	CGCG	1 cut(s)	180
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	332, 345
AcoI	YGGCCR	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	524
AfaI	GTAC	2 cut(s)	7, 154
AfiI	CCNNNNNNNGG	3 cut(s)	41, 155, 218
AgsI	TTSAA	2 cut(s)	49, 398
AjnI	CCWGG	2 cut(s)	148, 217
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	332, 345
AoxI	GGCC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	242
AsuNHI	GCTAGC	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	280
BccI	CCATC	2 cut(s)	179, 571
BciT130I	CCWGG	2 cut(s)	150, 219
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	2 cut(s)	383, 390
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	150, 219
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	150, 219
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	3 cut(s)	313, 395, 419
BmtI	GCTAGC	1 cut(s)	386
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	148, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 155, 218
Bse1I	ACTGG	3 cut(s)	114, 160, 370
Bse21I	CCTNAGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	150, 219
BseDI	CCNNGG	2 cut(s)	148, 408
BseLI	CCNNNNNNNGG	3 cut(s)	41, 155, 218
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	3 cut(s)	28, 87, 240
BseNI	ACTGG	3 cut(s)	114, 160, 370
BseYI	CCCAGC	2 cut(s)	65, 314
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	41, 155, 218
BsmAI	GTCTC	1 cut(s)	313
BsmBI	CGTCTC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	85, 337
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	3 cut(s)	27, 88, 239
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	339
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	332, 345
BspQI	GCTCTTC	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	3 cut(s)	114, 160, 370
BssECI	CCNNGG	2 cut(s)	148, 408
BssMI	GATC	2 cut(s)	85, 337
BssNI	GRCGYC	1 cut(s)	524
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	150, 219
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	51, 552
BstACI	GRCGYC	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	330, 384, 582
BstDEI	CTNAG	4 cut(s)	14, 96, 226, 442
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	2 cut(s)	88, 340
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	2 cut(s)	85, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	2 cut(s)	150, 219
BstNSI	RCATGY	2 cut(s)	332, 382
BstSCI	CCNGG	2 cut(s)	148, 217
BstUI	CGCG	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
Bsu36I	CCTNAGG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	28
Cac8I	GCNNGC	3 cut(s)	330, 384, 582
CfoI	GCGC	1 cut(s)	328
CseI	GACGC	1 cut(s)	513
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	6, 153
CviAII	CATG	5 cut(s)	241, 273, 329, 379, 547
CviJI	RGCY	7 cut(s)	28, 65, 115, 225, 292, 514, 562
CviKI_1	RGCY	7 cut(s)	28, 65, 115, 225, 292, 514, 562
CviQI	GTAC	2 cut(s)	6, 153
DdeI	CTNAG	4 cut(s)	14, 96, 226, 442
DpnI	GATC	2 cut(s)	87, 339
DpnII	GATC	2 cut(s)	85, 337
EaeI	YGGCCR	1 cut(s)	26
Eam1104I	CTCTTC	2 cut(s)	51, 552
EarI	CTCTTC	2 cut(s)	51, 552
Eco130I	CCWWGG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	14
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	148, 217
EcoT14I	CCWWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	5 cut(s)	244, 276, 332, 382, 550
FatI	CATG	5 cut(s)	240, 272, 328, 378, 546
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	527
FspAI	RTGCGCAY	1 cut(s)	327
FspBI	CTAG	2 cut(s)	383, 390
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	1 cut(s)	327
GsaI	CCCAGC	2 cut(s)	69, 318
HaeIII	GGCC	1 cut(s)	28
HgaI	GACGC	1 cut(s)	513
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	524
Hin1II	CATG	5 cut(s)	244, 276, 332, 382, 550
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	3 cut(s)	45, 464, 488
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	2 cut(s)	591, 617
Hpy188III	TCNNGA	3 cut(s)	16, 131, 461
Hpy8I	GTNNAC	1 cut(s)	528
HpyAV	CCTTC	4 cut(s)	35, 185, 440, 565
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	4 cut(s)	332, 347, 355, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	4 cut(s)	14, 96, 226, 442
HpySE526I	ACGT	1 cut(s)	530
Hsp92I	GRCGYC	1 cut(s)	524
Hsp92II	CATG	5 cut(s)	244, 276, 332, 382, 550
HspAI	GCGC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	85, 337
LguI	GCTCTTC	1 cut(s)	552
LweI	GCATC	3 cut(s)	313, 395, 419
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	2 cut(s)	383, 390
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	87, 339
MboI	GATC	2 cut(s)	85, 337
MboII	GAAGA	4 cut(s)	68, 146, 200, 569
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	28
MluCI	AATT	5 cut(s)	120, 161, 264, 356, 585
MluNI	TGGCCA	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	8 cut(s)	12, 23, 52, 63, 91, 222, 443, 585
Mox20I	TGGCCA	1 cut(s)	28
Mph1103I	ATGCAT	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	28
MseI	TTAA	6 cut(s)	75, 117, 288, 507, 576, 597
Msp20I	TGGCCA	1 cut(s)	28
MspR9I	CCNGG	2 cut(s)	150, 219
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	2 cut(s)	150, 219
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	2 cut(s)	85, 337
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	5 cut(s)	244, 276, 332, 382, 550
NlaIV	GGNNCC	1 cut(s)	339
NsbI	TGCGCA	1 cut(s)	327
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	2 cut(s)	332, 382
PaeI	GCATGC	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	552
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	45, 488
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	148, 217
PspFI	CCCAGC	2 cut(s)	65, 314
PspGI	CCWGG	2 cut(s)	148, 217
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	2 cut(s)	7, 154
RsaNI	GTAC	2 cut(s)	6, 153
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	6 cut(s)	75, 117, 288, 507, 576, 597
Sau3AI	GATC	2 cut(s)	85, 337
ScaI	AGTACT	1 cut(s)	7
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	150, 219
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	7 cut(s)	67, 178, 223, 232, 287, 533, 576
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	3 cut(s)	313, 395, 419
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	5 cut(s)	120, 161, 264, 356, 585
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	2 cut(s)	383, 390
StyD4I	CCNGG	2 cut(s)	148, 217
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	533
TaqI	TCGA	2 cut(s)	427, 462
TasI	AATT	5 cut(s)	120, 161, 264, 356, 585
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	2 cut(s)	45, 488
Tru1I	TTAA	6 cut(s)	75, 117, 288, 507, 576, 597
Tru9I	TTAA	6 cut(s)	75, 117, 288, 507, 576, 597
TspDTI	ATGAA	5 cut(s)	273, 462, 480, 570, 584
TspGWI	ACGGA	1 cut(s)	469
XagI	CCTNNNNNAGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	2 cut(s)	332, 382
XmiI	GTMKAC	1 cut(s)	527
XspI	CTAG	2 cut(s)	383, 390
ZrmI	AGTACT	1 cut(s)	7
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.