Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002202.1

Orthogroup ID

OG0021133

Physical Location & Seq

Genomic Coordinates Forward (+)

68016 .. 70392

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgcctggacacgaagttgccaacaatgacatgatgatcgatgagtatgaacagaagcaagtgaatgctgttcctgatggatttaactctcagtatctcaaaatttactatggaaagctcttcccatatgaggaaatgtttaagtggatgtcctatgcaaatgatggcaagcatcctgcatgcaaccagtcctactttggccggagagagttgtctttcacactggataatgatgtttatctgcggtacaaaactttcaactccgtgtctgagcttgaaaattctatcaaagagaagtgccccgtcaaaatagatattgggcctgtgtacactgttgatcctgcaaagaggcattcctatgctcaaagtggttgctaccccgaggagagggaactgatttttgatatagatatgtcagattacgatgatgttagatactgctgctcaggagctgatgtgtgcctggagtgctggccgcttatgacaattgctatcaaagtgattgacactgcccttcgagaaccccccatcgaatatgcaagaagaaaaatgggggagagccacaacaacctccaccaccgcgcaatgacgtcgtcctctgctgcttctcgattgggtttggggataaggactgcttcttcatccaccaccagtgaaatcgtggaggctcgaggccacattctaagggccactggccggaaggaccgcctcagcaaggtctgcaccgccaaaggccccagggaccatcgcgccgtcgattggctcatcaagaaagccaaggccgcaatcgacgagctcgacgagctgccgccgtggaacccgaactcaatttctgttcagacaacatcttctccgacagtgccgatatccgccgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

292

Amino Acids

33.02

Weight (kDa)

6.09

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	134 - 174	7.2e-09	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021133)

Species	Orthologous Gene IDs
malus_domestica	MD14G1127500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0245381
rosa_multiflora	Rmu_sc0000471.1_g000004 Rmu_sc0002202.1_g000012
rosa_samantha	Rh6BG026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	593
AccII	CGCG	3 cut(s)	582, 750, 875
AciI	CCGC	9 cut(s)	244, 476, 580, 706, 726, 783, 809, 870, 873
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	3 cut(s)	199, 473, 694
AcsI	RAATTY	2 cut(s)	102, 280
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	2 cut(s)	248, 329
AfiI	CCNNNNNNNGG	5 cut(s)	130, 387, 696, 715, 759
AgsI	TTSAA	2 cut(s)	259, 278
AjnI	CCWGG	3 cut(s)	4, 462, 737
AluBI	AGCT	5 cut(s)	118, 274, 452, 796, 805
AluI	AGCT	5 cut(s)	118, 274, 452, 796, 805
Alw21I	GWGCWC	1 cut(s)	798
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	2 cut(s)	380, 669
AoxI	GGCC	8 cut(s)	199, 320, 473, 673, 687, 694, 733, 780
ApeKI	GCWGC	3 cut(s)	441, 602, 805
ApoI	RAATTY	2 cut(s)	102, 280
AspLEI	GCGC	2 cut(s)	584, 752
AspS9I	GGNCC	5 cut(s)	320, 687, 703, 734, 742
AvaI	CYCGRG	2 cut(s)	380, 669
AvaII	GGWCC	2 cut(s)	703, 742
BaeGI	GKGCMC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	798
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	3 cut(s)	428, 589, 792
BccI	CCATC	4 cut(s)	71, 158, 536, 753
BceAI	ACGGC	2 cut(s)	737, 796
BcgI	CGANNNNNNTGC	2 cut(s)	573, 607
BciT130I	CCWGG	3 cut(s)	6, 464, 739
BisI	GCNGC	7 cut(s)	442, 476, 603, 783, 806, 809, 873
BlsI	GCNGC	7 cut(s)	443, 477, 604, 784, 807, 810, 874
Bme1390I	CCNGG	3 cut(s)	6, 464, 739
Bme18I	GGWCC	2 cut(s)	703, 742
BmeT110I	CYCGRG	2 cut(s)	380, 669
BmgT120I	GGNCC	5 cut(s)	320, 687, 703, 734, 742
BmiI	GGNNCC	3 cut(s)	736, 743, 818
BmrFI	CCNGG	3 cut(s)	6, 464, 739
BmsI	GCATC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	2 cut(s)	445, 710
Bsa29I	ATCGAT	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	5 cut(s)	381, 737, 738, 777, 812
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 471, 835, 865
Bsc4I	CCNNNNNNNGG	5 cut(s)	130, 387, 696, 715, 759
Bse1I	ACTGG	4 cut(s)	187, 228, 651, 697
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	3 cut(s)	6, 464, 739
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	5 cut(s)	381, 737, 738, 777, 812
BseGI	GGATG	3 cut(s)	153, 172, 641
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	5 cut(s)	130, 387, 696, 715, 759
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	4 cut(s)	104, 261, 459, 724
BseNI	ACTGG	4 cut(s)	187, 228, 651, 697
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	428, 589, 792
BsgI	GTGCAG	1 cut(s)	706
Bsh1236I	CGCG	3 cut(s)	582, 750, 875
BshFI	GGCC	8 cut(s)	201, 322, 475, 675, 689, 696, 735, 782
BshVI	ATCGAT	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	798
BsiHKCI	CYCGRG	2 cut(s)	380, 669
BsiSI	CCGG	2 cut(s)	202, 697
BslFI	GGGAC	1 cut(s)	755
BslI	CCNNNNNNNGG	5 cut(s)	130, 387, 696, 715, 759
BsmFI	GGGAC	1 cut(s)	755
BsmI	GAATGC	2 cut(s)	70, 352
BsnI	GGCC	8 cut(s)	201, 322, 475, 675, 689, 696, 735, 782
BsoBI	CYCGRG	2 cut(s)	380, 669
Bsp1286I	GDGCHC	2 cut(s)	302, 798
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	36, 337
BspACI	CCGC	9 cut(s)	244, 476, 580, 706, 726, 783, 809, 870, 873
BspANI	GGCC	8 cut(s)	201, 322, 475, 675, 689, 696, 735, 782
BspCNI	CTCAG	4 cut(s)	103, 262, 458, 723
BspDI	ATCGAT	1 cut(s)	39
BspFNI	CGCG	3 cut(s)	582, 750, 875
BspLI	GGNNCC	3 cut(s)	736, 743, 818
BspPI	GGATC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	591
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	4 cut(s)	187, 228, 651, 697
BssECI	CCNNGG	5 cut(s)	381, 737, 738, 777, 812
BssMI	GATC	2 cut(s)	36, 337
BssNI	GRCGYC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	3 cut(s)	6, 464, 739
Bst4CI	ACNGT	2 cut(s)	334, 859
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	590
BstAPI	GCANNNNNTGC	1 cut(s)	720
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	170, 181, 473
BstDEI	CTNAG	5 cut(s)	90, 270, 445, 683, 710
BstDSI	CCRYGG	1 cut(s)	812
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	3 cut(s)	153, 172, 641
BstFNI	CGCG	3 cut(s)	582, 750, 875
BstHHI	GCGC	2 cut(s)	584, 752
BstKTI	GATC	2 cut(s)	39, 340
BstMBI	GATC	2 cut(s)	36, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	468, 720, 782, 802
BstNI	CCWGG	3 cut(s)	6, 464, 739
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	4, 462, 737
BstSLI	GKGCMC	1 cut(s)	302
BstUI	CGCG	3 cut(s)	582, 750, 875
BstV1I	GCAGC	3 cut(s)	428, 589, 792
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	8 cut(s)	201, 322, 475, 675, 689, 696, 735, 782
BsuTUI	ATCGAT	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	812
BtgZI	GCGATG	1 cut(s)	731
BtsCI	GGATG	3 cut(s)	153, 172, 641
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	6 cut(s)	221, 330, 507, 658, 690, 864
Cac8I	GCNNGC	3 cut(s)	170, 181, 473
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	2 cut(s)	584, 752
Cfr13I	GGNCC	5 cut(s)	320, 687, 703, 734, 742
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	247, 328
CviAII	CATG	2 cut(s)	31, 180
CviQI	GTAC	2 cut(s)	247, 328
DdeI	CTNAG	5 cut(s)	90, 270, 445, 683, 710
DpnI	GATC	2 cut(s)	38, 339
DpnII	GATC	2 cut(s)	36, 337
EaeI	YGGCCR	3 cut(s)	199, 473, 694
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	859
Ecl136II	GAGCTC	1 cut(s)	796
Eco130I	CCWWGG	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	798
Eco32I	GATATC	1 cut(s)	867
Eco47I	GGWCC	2 cut(s)	703, 742
Eco53kI	GAGCTC	1 cut(s)	796
Eco88I	CYCGRG	2 cut(s)	380, 669
EcoICRI	GAGCTC	1 cut(s)	796
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRII	CCWGG	3 cut(s)	4, 462, 737
EcoRV	GATATC	1 cut(s)	867
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	2 cut(s)	34, 183
FalI	AAGNNNNNCTT	2 cut(s)	619, 651
FaqI	GGGAC	1 cut(s)	755
FatI	CATG	2 cut(s)	30, 179
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	7 cut(s)	442, 476, 603, 783, 806, 809, 873
FokI	GGATG	3 cut(s)	159, 160, 628
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	7 cut(s)	442, 476, 603, 783, 806, 809, 873
GlaI	GCGC	2 cut(s)	583, 751
GluI	GCNGC	7 cut(s)	442, 476, 603, 783, 806, 809, 873
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	8 cut(s)	201, 322, 475, 675, 689, 696, 735, 782
HapII	CCGG	2 cut(s)	202, 697
HhaI	GCGC	2 cut(s)	584, 752
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	2 cut(s)	34, 183
Hin6I	GCGC	2 cut(s)	582, 750
HinP1I	GCGC	2 cut(s)	582, 750
HpaII	CCGG	2 cut(s)	202, 697
Hpy166II	GTNNAC	2 cut(s)	328, 330
Hpy188I	TCNGA	4 cut(s)	271, 418, 840, 855
Hpy188III	TCNNGA	5 cut(s)	74, 447, 518, 609, 769
Hpy8I	GTNNAC	2 cut(s)	328, 330
Hpy99I	CGWCG	4 cut(s)	595, 758, 794, 803
HpyAV	CCTTC	2 cut(s)	524, 694
HpyCH4III	ACNGT	2 cut(s)	334, 859
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	6 cut(s)	158, 179, 183, 344, 539, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	468, 720, 782, 802
HpyF3I	CTNAG	5 cut(s)	90, 270, 445, 683, 710
HpySE526I	ACGT	1 cut(s)	590
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	2 cut(s)	34, 183
HspAI	GCGC	2 cut(s)	582, 750
Kzo9I	GATC	2 cut(s)	36, 337
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	3 cut(s)	428, 589, 792
LweI	GCATC	1 cut(s)	181
MaeII	ACGT	1 cut(s)	590
MalI	GATC	2 cut(s)	38, 339
MboI	GATC	2 cut(s)	36, 337
MboII	GAAGA	4 cut(s)	112, 555, 630, 840
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	302, 798
MluCI	AATT	4 cut(s)	102, 280, 486, 828
MmeI	TCCRAC	1 cut(s)	878
MnlI	CCTC	9 cut(s)	124, 342, 376, 381, 581, 607, 658, 665, 719
MseI	TTAA	2 cut(s)	84, 141
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	2 cut(s)	202, 697
MspR9I	CCNGG	3 cut(s)	6, 464, 739
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	2 cut(s)	70, 352
MvaI	CCWGG	3 cut(s)	6, 464, 739
MvnI	CGCG	3 cut(s)	582, 750, 875
MwoI	GCNNNNNNNGC	4 cut(s)	468, 720, 782, 802
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	2 cut(s)	36, 337
NlaIII	CATG	2 cut(s)	34, 183
NlaIV	GGNNCC	3 cut(s)	736, 743, 818
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PaeR7I	CTCGAG	1 cut(s)	669
PasI	CCCWGGG	1 cut(s)	738
PciSI	GCTCTTC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	2 cut(s)	795, 798
PctI	GAATGC	2 cut(s)	70, 352
PflFI	GACNNNGTC	1 cut(s)	592
PkrI	GCNGC	7 cut(s)	443, 477, 604, 784, 807, 810, 874
Psp124BI	GAGCTC	1 cut(s)	798
Psp6I	CCWGG	3 cut(s)	4, 462, 737
PspGI	CCWGG	3 cut(s)	4, 462, 737
PspN4I	GGNNCC	3 cut(s)	736, 743, 818
PspPI	GGNCC	5 cut(s)	320, 687, 703, 734, 742
PspXI	VCTCGAGB	1 cut(s)	669
PstNI	CAGNNNCTG	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	592
RsaI	GTAC	2 cut(s)	248, 329
RsaNI	GTAC	2 cut(s)	247, 328
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	798
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	84, 141
SatI	GCNGC	7 cut(s)	442, 476, 603, 783, 806, 809, 873
Sau3AI	GATC	2 cut(s)	36, 337
Sau96I	GGNCC	5 cut(s)	320, 687, 703, 734, 742
ScrFI	CCNGG	3 cut(s)	6, 464, 739
SduI	GDGCHC	2 cut(s)	302, 798
SetI	ASST	8 cut(s)	120, 276, 454, 573, 593, 720, 798, 807
SfaNI	GCATC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	669
SinI	GGWCC	2 cut(s)	703, 742
SlaI	CTCGAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	4 cut(s)	102, 280, 486, 828
SsiI	CCGC	9 cut(s)	244, 476, 580, 706, 726, 783, 809, 870, 873
SstI	GAGCTC	1 cut(s)	798
StyD4I	CCNGG	3 cut(s)	4, 462, 737
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	2 cut(s)	334, 859
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	8 cut(s)	39, 517, 531, 610, 670, 756, 789, 798
TasI	AATT	4 cut(s)	102, 280, 486, 828
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	4 cut(s)	478, 785, 811, 875
Tru1I	TTAA	2 cut(s)	84, 141
Tru9I	TTAA	2 cut(s)	84, 141
TscAI	CASTG	6 cut(s)	228, 337, 514, 658, 697, 864
TseI	GCWGC	3 cut(s)	441, 602, 805
TspDTI	ATGAA	2 cut(s)	63, 630
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	6 cut(s)	228, 337, 514, 658, 697, 864
Tth111I	GACNNNGTC	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	703, 742
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	2 cut(s)	102, 280
XceI	RCATGY	1 cut(s)	183
XcmI	CCANNNNNNNNNTGG	2 cut(s)	194, 658
XhoI	CTCGAG	1 cut(s)	669
ZraI	GACGTC	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.