Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002202.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

70468 .. 72246

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggtaggtagcaacggagtggcggagctggtgaatcagaacagctcgaattttctgcatgtgaggatggtgtggaggctgaagttgttaatctttgtctgcctacaattgcctcttattgaagttgggctagaggccaaagttgtcggacagaccaatgaagttgcaggtgaggatggtgtggagatggtgttgcatgttgggaacgacggagaggatggcggggatttgaagtggggggaaccaaaaacatctgcagtgcatgaaggtggattgagacgcagcggcgatgactttggtttcaatcacattctatgggtatacagtggccgacgtggtgttcattgttgggtttgtgatgggaaagctagaaggctcacaaatgaactgagagcaactattgctgactattttcgtgtctacaaggtgggcaatgaaaacagtcataaaaaggtttctttgatgggccctgctcttcatccattccttgtgagatcatataccgaagttcttaaggatttctttgagaggacattgctttccagtcaaaagatattttctactgcagagagatatgaaaagatcttagatatgattcctgatgaatctgtcacttctgagcttcggggaaagtggcaagataatagacgaacctccaatgcaaaagaagacatgacgcagacggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

229

Amino Acids

25.87

Weight (kDa)

6.18

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	96 - 211	2.9e-20	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AccI	GTMKAC	2 cut(s)	321, 420
AciI	CCGC	3 cut(s)	23, 222, 285
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	101
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	3 cut(s)	122, 232, 304
AjiI	CACGTC	1 cut(s)	335
AluBI	AGCT	4 cut(s)	28, 45, 368, 622
AluI	AGCT	4 cut(s)	28, 45, 368, 622
Alw26I	GTCTC	1 cut(s)	271
AoxI	GGCC	3 cut(s)	135, 328, 466
ApaI	GGGCCC	1 cut(s)	470
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	466, 467
AsuHPI	GGTGA	2 cut(s)	43, 182
BaeGI	GKGCMC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	6 cut(s)	61, 170, 181, 212, 353, 457
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	131, 369
BfmI	CTRYAG	2 cut(s)	255, 564
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	582
BisI	GCNGC	2 cut(s)	283, 286
BlsI	GCNGC	2 cut(s)	284, 287
BmgBI	CACGTC	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	466, 467
BmiI	GGNNCC	2 cut(s)	243, 468
BpiI	GAAGAC	1 cut(s)	675
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	2 cut(s)	439, 533
BseGI	GGATG	4 cut(s)	72, 181, 223, 478
BseMI	GCAATG	2 cut(s)	439, 533
BseMII	CTCAG	2 cut(s)	380, 609
BseNI	ACTGG	1 cut(s)	543
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	294
BshFI	GGCC	3 cut(s)	137, 330, 468
BsmAI	GTCTC	1 cut(s)	271
BsmBI	CGTCTC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	137, 330, 468
Bsp120I	GGGCCC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	2 cut(s)	494, 582
BspACI	CCGC	3 cut(s)	23, 222, 285
BspANI	GGCC	3 cut(s)	137, 330, 468
BspCNI	CTCAG	2 cut(s)	381, 610
BspLI	GGNNCC	2 cut(s)	243, 468
BspMAI	CTGCAG	2 cut(s)	259, 568
BspMI	ACCTGC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	480
BspTI	CTTAAG	1 cut(s)	512
BsrDI	GCAATG	2 cut(s)	439, 533
BsrI	ACTGG	1 cut(s)	543
BssMI	GATC	2 cut(s)	494, 582
BssNAI	GTATAC	1 cut(s)	322
Bst1107I	GTATAC	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	326, 443
Bst6I	CTCTTC	1 cut(s)	480
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstDEI	CTNAG	3 cut(s)	389, 586, 618
BstF5I	GGATG	4 cut(s)	72, 181, 223, 478
BstKTI	GATC	2 cut(s)	497, 585
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	2 cut(s)	494, 582
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNSI	RCATGY	2 cut(s)	62, 200
BstSFI	CTRYAG	2 cut(s)	255, 564
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	675
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
BstZ17I	GTATAC	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	137, 330, 468
BtgZI	GCGATG	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	335
BtsCI	GGATG	4 cut(s)	72, 181, 223, 478
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	264, 331
BveI	ACCTGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	466, 467
CseI	GACGC	2 cut(s)	288, 685
CviAII	CATG	4 cut(s)	59, 197, 263, 673
DdeI	CTNAG	3 cut(s)	389, 586, 618
DpnI	GATC	2 cut(s)	496, 584
DpnII	GATC	2 cut(s)	494, 582
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	470
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	4 cut(s)	62, 200, 266, 676
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FatI	CATG	4 cut(s)	58, 196, 262, 672
FauI	CCCGC	1 cut(s)	215
FblI	GTMKAC	2 cut(s)	321, 420
Fnu4HI	GCNGC	2 cut(s)	283, 286
FokI	GGATG	4 cut(s)	79, 188, 230, 465
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	283, 286
FspBI	CTAG	2 cut(s)	131, 369
GluI	GCNGC	2 cut(s)	283, 286
HaeIII	GGCC	3 cut(s)	137, 330, 468
HgaI	GACGC	2 cut(s)	288, 685
Hin1II	CATG	4 cut(s)	62, 200, 266, 676
HinfI	GANTC	3 cut(s)	34, 595, 605
HphI	GGTGA	2 cut(s)	43, 182
Hpy166II	GTNNAC	2 cut(s)	322, 421
Hpy188I	TCNGA	3 cut(s)	39, 149, 619
Hpy188III	TCNNGA	1 cut(s)	599
Hpy8I	GTNNAC	2 cut(s)	322, 421
Hpy99I	CGWCG	2 cut(s)	212, 336
HpyAV	CCTTC	2 cut(s)	260, 366
HpyCH4III	ACNGT	2 cut(s)	326, 443
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	7 cut(s)	58, 167, 196, 257, 262, 566, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	3 cut(s)	389, 586, 618
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	4 cut(s)	62, 200, 266, 676
Kzo9I	GATC	2 cut(s)	494, 582
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	5 cut(s)	14, 153, 483, 556, 612
Lsp1109I	GCAGC	1 cut(s)	294
MaeI	CTAG	2 cut(s)	131, 369
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	2 cut(s)	496, 584
MboI	GATC	2 cut(s)	494, 582
MboII	GAAGA	2 cut(s)	467, 680
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	2 cut(s)	49, 107
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	8 cut(s)	57, 69, 123, 127, 166, 208, 522, 664
MseI	TTAA	2 cut(s)	89, 513
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	285
MspCI	CTTAAG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	2 cut(s)	494, 582
NlaIII	CATG	4 cut(s)	62, 200, 266, 676
NlaIV	GGNNCC	2 cut(s)	243, 468
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	2 cut(s)	62, 200
PaqCI	CACCTGC	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	480
PfeI	GAWTC	3 cut(s)	34, 595, 605
PkrI	GCNGC	2 cut(s)	284, 287
PspN4I	GGNNCC	2 cut(s)	243, 468
PspOMI	GGGCCC	1 cut(s)	466
PspPI	GGNCC	2 cut(s)	466, 467
PstI	CTGCAG	2 cut(s)	259, 568
PsuI	RGATCY	1 cut(s)	582
RseI	CAYNNNNRTG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	89, 513
SatI	GCNGC	2 cut(s)	283, 286
Sau3AI	GATC	2 cut(s)	494, 582
Sau96I	GGNCC	2 cut(s)	466, 467
SduI	GDGCHC	1 cut(s)	470
SfcI	CTRYAG	2 cut(s)	255, 564
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	2 cut(s)	49, 107
SsiI	CCGC	3 cut(s)	23, 222, 285
SspMI	CTAG	2 cut(s)	131, 369
TaaI	ACNGT	2 cut(s)	326, 443
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	47
TasI	AATT	2 cut(s)	49, 107
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	3 cut(s)	34, 595, 605
Tru1I	TTAA	2 cut(s)	89, 513
Tru9I	TTAA	2 cut(s)	89, 513
TscAI	CASTG	2 cut(s)	264, 331
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	8 cut(s)	174, 279, 332, 399, 450, 467, 591, 618
TspGWI	ACGGA	2 cut(s)	30, 225
TspRI	CASTG	2 cut(s)	264, 331
Vha464I	CTTAAG	1 cut(s)	512
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	2 cut(s)	62, 200
XmiI	GTMKAC	2 cut(s)	321, 420
XspI	CTAG	2 cut(s)	131, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.