Rmu_sc0002205.1_g000061

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002205.1
N/A
Physical Location & Seq
Forward (+)
232043 .. 232345
303 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
atgagtaacctgtacaaattggaatttgctccattgggaacaattggctctgaatatcacaggtgggttcgtgatatccgccagcatctcaaagtcgatggaatcttggatacgattctccagtctagccaggacatgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaagcgaaagccatcatcctaatgactcatcatatggatgattcgctccagtacaagtgtatgaatgaagaagaccccagaaggctgtgggtctcactcgaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.57

Weight (kDa)

5.27

Isoelectric Point (pI)

63.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 2 cut(s) 14, 248
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 155, 161
AluI AGCT 2 cut(s) 155, 161
Alw26I GTCTC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 92, 215
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 2 cut(s) 104, 227
BpuEI CTTGAG 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 292
Bse1I ACTGG 2 cut(s) 121, 244
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 210, 238
BseNI ACTGG 2 cut(s) 121, 244
BseXI GCAGC 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 292
Bso31I GGTCTC 1 cut(s) 292
Bsp1407I TGTACA 1 cut(s) 12
BspACI CCGC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 292
BsrGI TGTACA 1 cut(s) 12
BsrI ACTGG 2 cut(s) 121, 244
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 210, 238
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 273
BsuI GTATCC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 210, 238
Cac8I GCNNGC 2 cut(s) 83, 153
Csp6I GTAC 2 cut(s) 13, 247
CviAII CATG 1 cut(s) 136
CviJI RGCY 7 cut(s) 48, 129, 155, 161, 182, 206, 280
CviKI_1 RGCY 7 cut(s) 48, 129, 155, 161, 182, 206, 280
CviQI GTAC 2 cut(s) 13, 247
DdeI CTNAG 1 cut(s) 184
EciI GGCGGA 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 76
FaeI CATG 1 cut(s) 139
FaiI YATR 4 cut(s) 137, 228, 230, 257
FatI CATG 1 cut(s) 135
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 197, 245
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 2 cut(s) 104, 227
Hin1II CATG 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 4 cut(s) 102, 115, 220, 236
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 1 cut(s) 139
LmnI GCTCC 2 cut(s) 34, 246
LpnPI CCDG 8 cut(s) 23, 46, 95, 116, 134, 143, 257, 286
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 2 cut(s) 275, 278
MfeI CAATTG 1 cut(s) 42
MluCI AATT 3 cut(s) 17, 23, 42
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 1 cut(s) 181
MslI CAYNNNNRTG 2 cut(s) 215, 231
MspR9I CCNGG 1 cut(s) 131
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
NdeI CATATG 1 cut(s) 228
NlaIII CATG 1 cut(s) 139
NspI RCATGY 1 cut(s) 139
PfeI GAWTC 3 cut(s) 102, 115, 236
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
RsaI GTAC 2 cut(s) 14, 248
RsaNI GTAC 2 cut(s) 13, 247
RseI CAYNNNNRTG 2 cut(s) 215, 231
SatI GCNGC 1 cut(s) 180
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 131
SetI ASST 4 cut(s) 12, 65, 157, 163
SfaNI GCATC 1 cut(s) 94
SmiMI CAYNNNNRTG 2 cut(s) 215, 231
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 3 cut(s) 17, 23, 42
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 96, 294
TasI AATT 3 cut(s) 17, 23, 42
TatI WGTACW 2 cut(s) 12, 246
TfiI GAWTC 3 cut(s) 102, 115, 236
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 272, 276
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 139
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.