Rmu_sc0002212.1_g000027

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002212.1
N/A
Physical Location & Seq
Forward (+)
85132 .. 89041
3910 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1272 bp
atgtttgctcaatcgctgcagcggttgaggcctcctgagaatgccccgacttcacttccaaatcatcctggggtgagcagggatggtgtggccaccagcggtggctctgtagaaatccaagttgcgggtctacggtgccgtgcagttgtttccggcggcggcggtgttagctgtttggagaaggcagttccaagcgaggccttttgggctaggtgtgtcttcgatggtggccggtcaaggtggttggtcggtggtggttccaggtacccttcagccgatgtgacccacctcgccgaggacctcttccctgaaaacgacgctgcttcagaaaatacccaatcctctgaagagatcctagtcaagattccaggtacgatcgtccacctcatcaagaaggactacatcatcgaattggcatgcggcgaactcaccatagtcggtctccggcaaggcggcaacgtagtcacggtgctcgcgcgtgtcaatgataagattcagtggcctttggtcaaggatgaagcggctgtaaagcttgaccacttccactacttcttcaacctacgcgttccaacgagtagggaaaatggtgagatggaaagcagctcaggtttgatccctagagagtctgcttccctgacttggcagccattccctttcttggagcccgtggttctcttattgtactggatcactgttagtggtgcagcaacatgcttcctacctgtaatgcgttcagtctcaggctacacactaggctctgcaggaggagaagccactgtggctagcagctgcaacttagcaaactgtgctccgagatttccgggcagggagagattcagaggctgtggggctgctgcaaatgggttagggatgggtaccttccccgagctggatgcccccagtattgaaggacaatcagaaaccctagccctaagattaggcgcaccatcgtcgtcgcttttgctgcgaactcgaaggtcgctgggggataaatttgtttcactggggctagcacatcatgccggaatctcaccagggccgttgtacgcttgtgccacgacagatcaccatacaatccaattcaacaacctcgcccagtgttgcccgaacccccatacagtggctatggtgcccatgaaagctcgtggattcgccctcctttgtgcagtgacagacgtaagaggtcctacgccaaagagattgttagacaccatcgcagcgcctagcaaagaaggtccacctatcctccatgatggcaagagttgccgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Senescence

Protein Analysis

423

Amino Acids

44.99

Weight (kDa)

7.56

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 264, 875
AccB1I GGYRCC 4 cut(s) 135, 264, 875, 1129
AccB7I CCANNNNNTGG 1 cut(s) 1120
AccI GTMKAC 1 cut(s) 130
AccII CGCG 3 cut(s) 476, 478, 564
AclWI GGATC 3 cut(s) 346, 607, 695
AcoI YGGCCR 2 cut(s) 90, 229
AcsI RAATTY 1 cut(s) 992
AcuI CTGAAG 3 cut(s) 255, 309, 366
AfaI GTAC 5 cut(s) 266, 373, 683, 877, 1046
AfiI CCNNNNNNNGG 6 cut(s) 124, 295, 639, 658, 889, 1120
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 3 cut(s) 556, 908, 1084
AjnI CCWGG 4 cut(s) 67, 260, 367, 1033
AluBI AGCT 6 cut(s) 171, 532, 603, 789, 889, 1142
AluI AGCT 6 cut(s) 171, 532, 603, 789, 889, 1142
Alw21I GWGCWC 2 cut(s) 474, 811
Alw26I GTCTC 2 cut(s) 446, 742
AlwI GGATC 3 cut(s) 346, 607, 695
AlwNI CAGNNNCTG 1 cut(s) 843
Ama87I CYCGRG 1 cut(s) 884
AoxI GGCC 6 cut(s) 29, 90, 198, 229, 500, 1037
ApoI RAATTY 1 cut(s) 992
Asp718I GGTACC 2 cut(s) 264, 875
AspLEI GCGC 3 cut(s) 478, 944, 1222
AspS9I GGNCC 4 cut(s) 298, 1037, 1184, 1235
AsuC2I CCSGG 1 cut(s) 822
AsuHPI GGTGA 5 cut(s) 85, 421, 599, 1023, 1058
AsuNHI GCTAGC 2 cut(s) 782, 1009
AvaI CYCGRG 1 cut(s) 884
AvaII GGWCC 3 cut(s) 298, 1184, 1235
BaeGI GKGCMC 1 cut(s) 1134
BaeI ACNNNNGTAYC 2 cut(s) 363, 396
BalI TGGCCA 1 cut(s) 92
BanI GGYRCC 4 cut(s) 135, 264, 875, 1129
BanII GRGCYC 1 cut(s) 666
BauI CACGAG 1 cut(s) 1143
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 2 cut(s) 474, 811
BccI CCATC 7 cut(s) 77, 218, 586, 865, 955, 1220, 1247
BceAI ACGGC 2 cut(s) 123, 1024
BcgI CGANNNNNNTGC 4 cut(s) 875, 909, 933, 967
BciT130I CCWGG 4 cut(s) 69, 262, 369, 1035
BcnI CCSGG 1 cut(s) 822
BcoDI GTCTC 2 cut(s) 446, 742
BfaI CTAG 8 cut(s) 210, 356, 618, 752, 783, 926, 1010, 1224
BfmI CTRYAG 3 cut(s) 17, 108, 759
BfoI RGCGCY 1 cut(s) 1223
BglI GCCNNNNNGGC 2 cut(s) 206, 779
Bme1390I CCNGG 5 cut(s) 69, 262, 369, 822, 1035
Bme18I GGWCC 3 cut(s) 298, 1184, 1235
BmeT110I CYCGRG 1 cut(s) 884
BmgT120I GGNCC 4 cut(s) 298, 1037, 1184, 1235
BmiI GGNNCC 6 cut(s) 137, 259, 266, 663, 877, 1131
BmrFI CCNGG 5 cut(s) 69, 262, 369, 822, 1035
BmrI ACTGGG 3 cut(s) 894, 1013, 1090
BmsI GCATC 1 cut(s) 883
BmtI GCTAGC 2 cut(s) 786, 1013
BmuI ACTGGG 3 cut(s) 894, 1013, 1090
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 604
BpuMI CCSGG 1 cut(s) 822
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 4 cut(s) 68, 294, 666, 1034
BsaXI ACNNNNNCTCC 2 cut(s) 1230, 1260
Bsc4I CCNNNNNNNGG 6 cut(s) 124, 295, 639, 658, 889, 1120
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 4 cut(s) 689, 900, 1008, 1096
BseBI CCWGG 4 cut(s) 69, 262, 369, 1035
BseDI CCNNGG 4 cut(s) 68, 294, 666, 1034
BseGI GGATG 5 cut(s) 64, 88, 520, 876, 898
BseLI CCNNNNNNNGG 6 cut(s) 124, 295, 639, 658, 889, 1120
BseMII CTCAG 3 cut(s) 27, 618, 753
BseNI ACTGG 4 cut(s) 689, 900, 1008, 1096
BseRI GAGGAG 1 cut(s) 780
BseSI GKGCMC 1 cut(s) 1134
BseYI CCCAGC 1 cut(s) 982
BsgI GTGCAG 3 cut(s) 162, 723, 1185
Bsh1236I CGCG 3 cut(s) 476, 478, 564
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 6 cut(s) 31, 92, 200, 231, 502, 1039
BshNI GGYRCC 4 cut(s) 135, 264, 875, 1129
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 474, 811
BsiHKCI CYCGRG 1 cut(s) 884
BsiSI CCGG 5 cut(s) 153, 232, 445, 821, 1023
BslI CCNNNNNNNGG 6 cut(s) 124, 295, 639, 658, 889, 1120
BsmAI GTCTC 2 cut(s) 446, 742
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 6 cut(s) 31, 92, 200, 231, 502, 1039
Bso31I GGTCTC 1 cut(s) 446
BsoBI CYCGRG 1 cut(s) 884
Bsp1286I GDGCHC 4 cut(s) 474, 666, 811, 1134
Bsp143I GATC 5 cut(s) 351, 375, 612, 687, 1063
BspANI GGCC 6 cut(s) 31, 92, 200, 231, 502, 1039
BspCNI CTCAG 3 cut(s) 28, 617, 752
BspFNI CGCG 3 cut(s) 476, 478, 564
BspLI GGNNCC 6 cut(s) 137, 259, 266, 663, 877, 1131
BspMAI CTGCAG 2 cut(s) 21, 763
BspOI GCTAGC 2 cut(s) 786, 1013
BspPI GGATC 3 cut(s) 346, 607, 695
BspT107I GGYRCC 4 cut(s) 135, 264, 875, 1129
BspTNI GGTCTC 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 4 cut(s) 689, 900, 1008, 1096
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 4 cut(s) 68, 294, 666, 1034
BssMI GATC 5 cut(s) 351, 375, 612, 687, 1063
BssSI CACGAG 1 cut(s) 1143
Bst2BI CACGAG 1 cut(s) 1143
Bst2UI CCWGG 4 cut(s) 69, 262, 369, 1035
Bst4CI ACNGT 6 cut(s) 135, 469, 694, 778, 806, 1120
Bst6I CTCTTC 2 cut(s) 308, 342
BstAPI GCANNNNNTGC 3 cut(s) 806, 1019, 1263
BstC8I GCNNGC 4 cut(s) 418, 474, 784, 1011
BstDEI CTNAG 5 cut(s) 36, 604, 739, 796, 932
BstDSI CCRYGG 1 cut(s) 666
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 5 cut(s) 64, 88, 520, 876, 898
BstFNI CGCG 3 cut(s) 476, 478, 564
BstH2I RGCGCY 1 cut(s) 1223
BstHHI GCGC 3 cut(s) 478, 944, 1222
BstKTI GATC 5 cut(s) 354, 378, 615, 690, 1066
BstMAI GTCTC 2 cut(s) 446, 742
BstMBI GATC 5 cut(s) 351, 375, 612, 687, 1063
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 8 cut(s) 28, 168, 206, 779, 806, 964, 1019, 1263
BstNI CCWGG 4 cut(s) 69, 262, 369, 1035
BstNSI RCATGY 2 cut(s) 420, 714
BstSCI CCNGG 5 cut(s) 67, 260, 367, 820, 1033
BstSFI CTRYAG 3 cut(s) 17, 108, 759
BstSLI GKGCMC 1 cut(s) 1134
BstUI CGCG 3 cut(s) 476, 478, 564
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 6 cut(s) 31, 92, 200, 231, 502, 1039
BtgI CCRYGG 1 cut(s) 666
BtgZI GCGATG 1 cut(s) 1198
BtsCI GGATG 5 cut(s) 64, 88, 520, 876, 898
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 7 cut(s) 503, 690, 774, 1001, 1103, 1125, 1173
Cac8I GCNNGC 4 cut(s) 418, 474, 784, 1011
CaiI CAGNNNCTG 1 cut(s) 843
CfoI GCGC 3 cut(s) 478, 944, 1222
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 4 cut(s) 298, 1037, 1184, 1235
CseI GACGC 1 cut(s) 326
Csp6I GTAC 5 cut(s) 265, 372, 682, 876, 1045
CviAII CATG 5 cut(s) 417, 711, 1019, 1135, 1250
CviQI GTAC 5 cut(s) 265, 372, 682, 876, 1045
DdeI CTNAG 5 cut(s) 36, 604, 739, 796, 932
DpnI GATC 5 cut(s) 353, 377, 614, 689, 1065
DpnII GATC 5 cut(s) 351, 375, 612, 687, 1063
EaeI YGGCCR 2 cut(s) 90, 229
Eam1104I CTCTTC 2 cut(s) 308, 342
EarI CTCTTC 2 cut(s) 308, 342
Eco147I AGGCCT 2 cut(s) 31, 200
Eco24I GRGCYC 1 cut(s) 666
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 3 cut(s) 298, 1184, 1235
Eco57I CTGAAG 3 cut(s) 255, 309, 366
Eco88I CYCGRG 1 cut(s) 884
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 2 cut(s) 298, 1184
EcoRII CCWGG 4 cut(s) 67, 260, 367, 1033
EcoT38I GRGCYC 1 cut(s) 666
FaeI CATG 5 cut(s) 420, 714, 1022, 1138, 1253
FaiI YATR 9 cut(s) 418, 434, 712, 1020, 1071, 1116, 1127, 1136, 1251
FatI CATG 5 cut(s) 416, 710, 1018, 1134, 1249
FauI CCCGC 1 cut(s) 118
FblI GTMKAC 1 cut(s) 130
FokI GGATG 5 cut(s) 51, 95, 527, 883, 905
FriOI GRGCYC 1 cut(s) 666
FspBI CTAG 8 cut(s) 210, 356, 618, 752, 783, 926, 1010, 1224
GlaI GCGC 3 cut(s) 477, 943, 1221
GsaI CCCAGC 1 cut(s) 986
HaeII RGCGCY 1 cut(s) 1223
HaeIII GGCC 6 cut(s) 31, 92, 200, 231, 502, 1039
HapII CCGG 5 cut(s) 153, 232, 445, 821, 1023
HgaI GACGC 1 cut(s) 326
HhaI GCGC 3 cut(s) 478, 944, 1222
Hin1II CATG 5 cut(s) 420, 714, 1022, 1138, 1253
Hin6I GCGC 3 cut(s) 476, 942, 1220
HinP1I GCGC 3 cut(s) 476, 942, 1220
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 6 cut(s) 364, 493, 623, 834, 1026, 1149
HpaII CCGG 5 cut(s) 153, 232, 445, 821, 1023
HphI GGTGA 5 cut(s) 85, 421, 599, 1023, 1058
Hpy166II GTNNAC 3 cut(s) 131, 382, 1238
Hpy188I TCNGA 5 cut(s) 328, 346, 813, 839, 919
Hpy188III TCNNGA 3 cut(s) 35, 361, 391
Hpy8I GTNNAC 3 cut(s) 131, 382, 1238
Hpy99I CGWCG 3 cut(s) 320, 955, 958
HpyAV CCTTC 7 cut(s) 175, 279, 388, 889, 902, 969, 1226
HpyCH4III ACNGT 6 cut(s) 135, 469, 694, 778, 806, 1120
HpyCH4IV ACGT 2 cut(s) 459, 1176
HpyCH4V TGCA 7 cut(s) 19, 143, 704, 761, 792, 857, 1166
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 168, 206, 779, 806, 964, 1019, 1263
HpyF3I CTNAG 5 cut(s) 36, 604, 739, 796, 932
HpySE526I ACGT 2 cut(s) 459, 1176
Hsp92II CATG 5 cut(s) 420, 714, 1022, 1138, 1253
HspAI GCGC 3 cut(s) 476, 942, 1220
KpnI GGTACC 2 cut(s) 268, 879
Kzo9I GATC 5 cut(s) 351, 375, 612, 687, 1063
LmnI GCTCC 2 cut(s) 661, 814
LweI GCATC 1 cut(s) 883
MaeI CTAG 8 cut(s) 210, 356, 618, 752, 783, 926, 1010, 1224
MaeII ACGT 2 cut(s) 459, 1176
MaeIII GTNAC 3 cut(s) 280, 463, 1168
MalI GATC 5 cut(s) 353, 377, 614, 689, 1065
MboI GATC 5 cut(s) 351, 375, 612, 687, 1063
MboII GAAGA 4 cut(s) 211, 295, 359, 544
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 4 cut(s) 474, 666, 811, 1134
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 3 cut(s) 410, 992, 1079
MluI ACGCGT 1 cut(s) 562
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 1 cut(s) 593
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 3 cut(s) 22, 99, 789
MspI CCGG 5 cut(s) 153, 232, 445, 821, 1023
MspR9I CCNGG 5 cut(s) 69, 262, 369, 822, 1035
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 4 cut(s) 69, 262, 369, 1035
MvnI CGCG 3 cut(s) 476, 478, 564
MwoI GCNNNNNNNGC 8 cut(s) 28, 168, 206, 779, 806, 964, 1019, 1263
NciI CCSGG 1 cut(s) 822
NdeII GATC 5 cut(s) 351, 375, 612, 687, 1063
NheI GCTAGC 2 cut(s) 782, 1009
NlaIII CATG 5 cut(s) 420, 714, 1022, 1138, 1253
NlaIV GGNNCC 6 cut(s) 137, 259, 266, 663, 877, 1131
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 3 cut(s) 280, 463, 1168
NspI RCATGY 2 cut(s) 420, 714
PaeI GCATGC 1 cut(s) 420
PceI AGGCCT 2 cut(s) 31, 200
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 5 cut(s) 364, 493, 834, 1026, 1149
PflMI CCANNNNNTGG 1 cut(s) 1120
Ple19I CGATCG 1 cut(s) 378
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
PpuMI RGGWCCY 2 cut(s) 298, 1184
Psp5II RGGWCCY 2 cut(s) 298, 1184
Psp6I CCWGG 4 cut(s) 67, 260, 367, 1033
PspFI CCCAGC 1 cut(s) 982
PspGI CCWGG 4 cut(s) 67, 260, 367, 1033
PspN4I GGNNCC 6 cut(s) 137, 259, 266, 663, 877, 1131
PspPI GGNCC 4 cut(s) 298, 1037, 1184, 1235
PspPPI RGGWCCY 2 cut(s) 298, 1184
PstI CTGCAG 2 cut(s) 21, 763
PstNI CAGNNNCTG 1 cut(s) 843
PsuI RGATCY 1 cut(s) 351
PvuI CGATCG 1 cut(s) 378
PvuII CAGCTG 1 cut(s) 789
RsaI GTAC 5 cut(s) 266, 373, 683, 877, 1046
RsaNI GTAC 5 cut(s) 265, 372, 682, 876, 1045
Sau3AI GATC 5 cut(s) 351, 375, 612, 687, 1063
Sau96I GGNCC 4 cut(s) 298, 1037, 1184, 1235
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 5 cut(s) 69, 262, 369, 822, 1035
SduI GDGCHC 4 cut(s) 474, 666, 811, 1134
SfaNI GCATC 1 cut(s) 883
SfcI CTRYAG 3 cut(s) 17, 108, 759
SinI GGWCC 3 cut(s) 298, 1184, 1235
SphI GCATGC 1 cut(s) 420
Sse9I AATT 3 cut(s) 410, 992, 1079
SseBI AGGCCT 2 cut(s) 31, 200
SspMI CTAG 8 cut(s) 210, 356, 618, 752, 783, 926, 1010, 1224
StuI AGGCCT 2 cut(s) 31, 200
StyD4I CCNGG 5 cut(s) 67, 260, 367, 820, 1033
TaaI ACNGT 6 cut(s) 135, 469, 694, 778, 806, 1120
TaiI ACGT 2 cut(s) 462, 1179
TaqI TCGA 3 cut(s) 222, 408, 973
TaqII GACCGA 1 cut(s) 428
TasI AATT 3 cut(s) 410, 992, 1079
TatI WGTACW 1 cut(s) 681
TauI GCSGC 6 cut(s) 159, 162, 423, 456, 524, 1269
TfiI GAWTC 5 cut(s) 364, 493, 834, 1026, 1149
TscAI CASTG 7 cut(s) 503, 697, 781, 1008, 1103, 1125, 1173
TseFI GTSAC 3 cut(s) 280, 463, 1168
Tsp45I GTSAC 3 cut(s) 280, 463, 1168
TspDTI ATGAA 2 cut(s) 531, 1151
TspRI CASTG 7 cut(s) 503, 697, 781, 1008, 1103, 1125, 1173
Van91I CCANNNNNTGG 1 cut(s) 1120
VpaK11BI GGWCC 3 cut(s) 298, 1184, 1235
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 1 cut(s) 992
XceI RCATGY 2 cut(s) 420, 714
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 8 cut(s) 210, 356, 618, 752, 783, 926, 1010, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.