Rmu_sc0002226.1_g000011

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002226.1
N/A
Physical Location & Seq
Reverse (-)
42163 .. 42477
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
atgtcgaaagaaccaagactcgactttcccatgtttgactcaacagattcggaataccatagatgggtaaccgatgttgagaaccacctcacttctttgggaatattacccataatccggccaccaaacccagatcttgttttcaagcctacagttactaagcatgctcgaccaatcatcctgatgcgacgacacatggataaatcacttcgtttggagtacatgtcgatcagagatgcaagagaattatgggtagctctagaagagtgttttggcaatgtccaagattcaatcctccctgatttgaaggtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.23

Weight (kDa)

6.05

Isoelectric Point (pI)

62.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 119
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 64, 117
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 3 cut(s) 145, 291, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
AoxI GGCC 1 cut(s) 119
BccI CCATC 1 cut(s) 57
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 150
BglII AGATCT 1 cut(s) 133
BmsI GCATC 2 cut(s) 174, 226
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 117
Bse3DI GCAATG 1 cut(s) 283
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 64, 117
BseMI GCAATG 1 cut(s) 283
BshFI GGCC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 64, 117
BsnI GGCC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 133, 228
BspANI GGCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 283
BssMI GATC 2 cut(s) 133, 228
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 2 cut(s) 136, 231
BstMBI GATC 2 cut(s) 133, 228
BstNSI RCATGY 2 cut(s) 167, 226
BstPI GGTNACC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 220
CviAII CATG 4 cut(s) 31, 164, 196, 223
CviJI RGCY 3 cut(s) 121, 148, 257
CviKI_1 RGCY 3 cut(s) 121, 148, 257
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 135, 230
DpnII GATC 2 cut(s) 133, 228
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
FaeI CATG 4 cut(s) 34, 167, 199, 226
FaiI YATR 7 cut(s) 32, 60, 113, 165, 197, 224, 250
FatI CATG 4 cut(s) 30, 163, 195, 222
FokI GGATG 1 cut(s) 164
FspBI CTAG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 118
Hin1II CATG 4 cut(s) 34, 167, 199, 226
HinfI GANTC 4 cut(s) 18, 38, 47, 287
HpaII CCGG 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 52, 233
Hpy188III TCNNGA 2 cut(s) 181, 260
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 4 cut(s) 34, 167, 199, 226
Kzo9I GATC 2 cut(s) 133, 228
LpnPI CCDG 3 cut(s) 131, 144, 194
LweI GCATC 2 cut(s) 174, 226
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 2 cut(s) 67, 154
MalI GATC 2 cut(s) 135, 230
MboI GATC 2 cut(s) 133, 228
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 245
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 2 cut(s) 98, 305
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 1 cut(s) 118
NdeII GATC 2 cut(s) 133, 228
NlaIII CATG 4 cut(s) 34, 167, 199, 226
NspI RCATGY 2 cut(s) 167, 226
PaeI GCATGC 1 cut(s) 167
PciI ACATGT 1 cut(s) 222
PfeI GAWTC 2 cut(s) 47, 287
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
PscI ACATGT 1 cut(s) 222
PspEI GGTNACC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 182
Sau3AI GATC 2 cut(s) 133, 228
SchI GAGTC 2 cut(s) 12, 32
SetI ASST 3 cut(s) 90, 259, 312
SfaNI GCATC 2 cut(s) 174, 226
SfcI CTRYAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 182
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 245
SspI AATATT 1 cut(s) 105
SspMI CTAG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 4 cut(s) 5, 21, 169, 227
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 2 cut(s) 47, 287
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 2 cut(s) 167, 226
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.