Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002226.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

151991 .. 155252

Gene Structure 3262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgaggcaaccggcagcagtgaacgtcgaagcggacctcgaggccgccgctcaacatgccggggggcttccgccaagggaatcactctgggctaccatacagcccccactcacttgccccttcccccctcctggctgtggagctgctaccattttgatggctttccagcacacagtcgtcatgcttggccagctggtgatgatcgtcagcctccttgtcccattgatggggggtggagaggaggagaaagctaagatcatattgatctccttgttcatatccgggtggaccacgttgatgcagtgtttgttgggcactttgcttccttcggtgatggcatcttcatcatatgcctactttattccgagtatggccattgcccagaggtttgcccatgaggatccctcaaagtcaaacaacgaacccggattcacaacccaatcgccgacagccgcgaaccctgtcgccgaaacagataagatcgaagcaaagttggaatcaatccgccaccaccgaacacccagcacgaccgccagatcgaaaccagaaaagcacggtcagataggcctccagaccagaagcttctcaacgccaaacacgatcgacgctgagtaccctcctagcgccgctgccgtaccatgcctctccacgattgccgccttaaccgagggaagtgtgccgctgccggtcgaaacccaagtttcgaaaagcctaggtcacttcgataagctcagagacgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

247

Amino Acids

26.26

Weight (kDa)

5.96

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xan_ur_permease	PF00860	50 - 128	3.8e-08	Permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	50
AccII	CGCG	1 cut(s)	455
AclWI	GGATC	2 cut(s)	395, 408
AcoI	YGGCCR	2 cut(s)	187, 372
AcyI	GRCGYC	1 cut(s)	738
AfaI	GTAC	2 cut(s)	614, 636
AfiI	CCNNNNNNNGG	4 cut(s)	131, 137, 226, 227
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	5 cut(s)	143, 193, 251, 582, 730
AluI	AGCT	5 cut(s)	143, 193, 251, 582, 730
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	2 cut(s)	395, 408
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	4 cut(s)	42, 187, 372, 565
ApeKI	GCWGC	4 cut(s)	14, 143, 629, 682
AspA2I	CCTAGG	1 cut(s)	712
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	2 cut(s)	34, 288
AsuC2I	CCSGG	3 cut(s)	61, 283, 426
AsuHPI	GGTGA	2 cut(s)	208, 343
AsuII	TTCGAA	1 cut(s)	704
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	2 cut(s)	34, 288
AvrII	CCTAGG	1 cut(s)	712
BaeGI	GKGCMC	1 cut(s)	317
BalI	TGGCCA	2 cut(s)	189, 374
BamHI	GGATCC	1 cut(s)	400
BbvI	GCAGC	4 cut(s)	26, 130, 616, 669
BccI	CCATC	3 cut(s)	151, 220, 328
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	1 cut(s)	132
BcnI	CCSGG	3 cut(s)	61, 283, 426
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	2 cut(s)	621, 713
BfoI	RGCGCY	1 cut(s)	627
BlnI	CCTAGG	1 cut(s)	712
Bme1390I	CCNGG	4 cut(s)	61, 132, 283, 426
Bme18I	GGWCC	2 cut(s)	34, 288
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	34, 288
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	4 cut(s)	61, 132, 283, 426
BmsI	GCATC	2 cut(s)	288, 347
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	1 cut(s)	554
Bpu14I	TTCGAA	1 cut(s)	704
BpuMI	CCSGG	3 cut(s)	61, 283, 426
BsaHI	GRCGYC	1 cut(s)	738
BsaJI	CCNNGG	4 cut(s)	60, 74, 666, 712
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 137, 226, 227
Bse118I	RCCGGY	2 cut(s)	10, 685
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	4 cut(s)	60, 74, 666, 712
BseLI	CCNNNNNNNGG	4 cut(s)	131, 137, 226, 227
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	600
BseRI	GAGGAG	2 cut(s)	254, 257
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	26, 130, 616, 669
BseYI	CCCAGC	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	455
Bsh1285I	CGRYCG	3 cut(s)	531, 603, 690
BshFI	GGCC	4 cut(s)	44, 189, 374, 567
BsiEI	CGRYCG	3 cut(s)	531, 603, 690
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	5 cut(s)	11, 60, 282, 426, 686
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	4 cut(s)	131, 137, 226, 227
BsmAI	GTCTC	1 cut(s)	729
BsmBI	CGTCTC	1 cut(s)	729
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	4 cut(s)	44, 189, 374, 567
BsoBI	CYCGRG	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	7 cut(s)	201, 255, 264, 400, 480, 536, 600
BspANI	GGCC	4 cut(s)	44, 189, 374, 567
BspCNI	CTCAG	2 cut(s)	601, 744
BspFNI	CGCG	1 cut(s)	455
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	2 cut(s)	395, 408
BspT104I	TTCGAA	1 cut(s)	704
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	2 cut(s)	10, 685
BssAI	RCCGGY	2 cut(s)	10, 685
BssECI	CCNNGG	4 cut(s)	60, 74, 666, 712
BssMI	GATC	7 cut(s)	201, 255, 264, 400, 480, 536, 600
BssNI	GRCGYC	1 cut(s)	738
BssT1I	CCWWGG	2 cut(s)	74, 712
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	175, 557
BstACI	GRCGYC	1 cut(s)	738
BstBI	TTCGAA	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	3 cut(s)	252, 609, 731
BstFNI	CGCG	1 cut(s)	455
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	7 cut(s)	204, 258, 267, 403, 483, 539, 603
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	7 cut(s)	201, 255, 264, 400, 480, 536, 600
BstMCI	CGRYCG	3 cut(s)	531, 603, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 190
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	4 cut(s)	59, 130, 281, 424
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	4 cut(s)	26, 130, 616, 669
BstX2I	RGATCY	1 cut(s)	400
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	4 cut(s)	44, 189, 374, 567
BtsI	GCAGTG	2 cut(s)	24, 308
BtsIMutI	CAGTG	2 cut(s)	24, 308
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	1 cut(s)	626
Cfr10I	RCCGGY	2 cut(s)	10, 685
Cfr13I	GGNCC	2 cut(s)	34, 288
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	2 cut(s)	613, 635
CviAII	CATG	4 cut(s)	56, 181, 395, 639
CviQI	GTAC	2 cut(s)	613, 635
DdeI	CTNAG	3 cut(s)	252, 609, 731
DpnI	GATC	7 cut(s)	203, 257, 266, 402, 482, 538, 602
DpnII	GATC	7 cut(s)	201, 255, 264, 400, 480, 536, 600
EaeI	YGGCCR	2 cut(s)	187, 372
EciI	GGCGGA	2 cut(s)	60, 494
Eco130I	CCWWGG	2 cut(s)	74, 712
Eco147I	AGGCCT	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	34, 288
Eco88I	CYCGRG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	74, 712
ErhI	CCWWGG	2 cut(s)	74, 712
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	4 cut(s)	59, 184, 398, 642
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	4 cut(s)	55, 180, 394, 638
FauNDI	CATATG	1 cut(s)	349
FspBI	CTAG	2 cut(s)	621, 713
GlaI	GCGC	1 cut(s)	625
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	4 cut(s)	44, 189, 374, 567
HapII	CCGG	5 cut(s)	11, 60, 282, 426, 686
HgaI	GACGC	1 cut(s)	614
HhaI	GCGC	1 cut(s)	626
Hin1I	GRCGYC	1 cut(s)	738
Hin1II	CATG	4 cut(s)	59, 184, 398, 642
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	3 cut(s)	80, 429, 497
HpaII	CCGG	5 cut(s)	11, 60, 282, 426, 686
HphI	GGTGA	2 cut(s)	208, 343
Hpy166II	GTNNAC	2 cut(s)	22, 288
Hpy188I	TCNGA	3 cut(s)	366, 561, 734
Hpy188III	TCNNGA	1 cut(s)	571
Hpy8I	GTNNAC	2 cut(s)	22, 288
Hpy99I	CGWCG	2 cut(s)	29, 608
HpyAV	CCTTC	2 cut(s)	130, 336
HpyCH4III	ACNGT	2 cut(s)	175, 557
HpyCH4IV	ACGT	2 cut(s)	24, 293
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 190
HpyF3I	CTNAG	3 cut(s)	252, 609, 731
HpySE526I	ACGT	2 cut(s)	24, 293
Hsp92I	GRCGYC	1 cut(s)	738
Hsp92II	CATG	4 cut(s)	59, 184, 398, 642
HspAI	GCGC	1 cut(s)	624
Kzo9I	GATC	7 cut(s)	201, 255, 264, 400, 480, 536, 600
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	4 cut(s)	26, 130, 616, 669
LweI	GCATC	2 cut(s)	288, 347
MaeI	CTAG	2 cut(s)	621, 713
MaeII	ACGT	2 cut(s)	24, 293
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	7 cut(s)	203, 257, 266, 402, 482, 538, 602
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	7 cut(s)	201, 255, 264, 400, 480, 536, 600
MboII	GAAGA	1 cut(s)	333
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	2 cut(s)	189, 374
MluNI	TGGCCA	2 cut(s)	189, 374
MmeI	TCCRAC	1 cut(s)	474
Mox20I	TGGCCA	2 cut(s)	189, 374
MscI	TGGCCA	2 cut(s)	189, 374
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	2 cut(s)	155, 296
Msp20I	TGGCCA	2 cut(s)	189, 374
MspA1I	CMGCKG	3 cut(s)	193, 629, 682
MspI	CCGG	5 cut(s)	11, 60, 282, 426, 686
MspR9I	CCNGG	4 cut(s)	61, 132, 283, 426
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	56, 190
NciI	CCSGG	3 cut(s)	61, 283, 426
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	7 cut(s)	201, 255, 264, 400, 480, 536, 600
NlaIII	CATG	4 cut(s)	59, 184, 398, 642
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	59
NspV	TTCGAA	1 cut(s)	704
PaeR7I	CTCGAG	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	80, 429, 497
Ple19I	CGATCG	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	2 cut(s)	34, 288
PspXI	VCTCGAGB	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	400
PvuI	CGATCG	1 cut(s)	603
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	614, 636
RsaNI	GTAC	2 cut(s)	613, 635
RseI	CAYNNNNRTG	2 cut(s)	155, 296
SaqAI	TTAA	1 cut(s)	662
Sau3AI	GATC	7 cut(s)	201, 255, 264, 400, 480, 536, 600
Sau96I	GGNCC	2 cut(s)	34, 288
ScrFI	CCNGG	4 cut(s)	61, 132, 283, 426
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	2 cut(s)	288, 347
Sfr274I	CTCGAG	1 cut(s)	38
SfuI	TTCGAA	1 cut(s)	704
SinI	GGWCC	2 cut(s)	34, 288
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	2 cut(s)	155, 296
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SseBI	AGGCCT	1 cut(s)	567
SspMI	CTAG	2 cut(s)	621, 713
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	4 cut(s)	59, 130, 281, 424
StyI	CCWWGG	2 cut(s)	74, 712
TaaI	ACNGT	2 cut(s)	175, 557
TaiI	ACGT	2 cut(s)	27, 296
TaqI	TCGA	8 cut(s)	27, 39, 483, 539, 603, 690, 704, 723
TauI	GCSGC	6 cut(s)	47, 50, 455, 629, 659, 682
TfiI	GAWTC	3 cut(s)	80, 429, 497
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	2 cut(s)	24, 308
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	4 cut(s)	14, 143, 629, 682
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	2 cut(s)	265, 333
TspRI	CASTG	2 cut(s)	24, 308
VpaK11BI	GGWCC	2 cut(s)	34, 288
XceI	RCATGY	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	38
XmaJI	CCTAGG	1 cut(s)	712
XspI	CTAG	2 cut(s)	621, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.