Rmu_sc0002226.1_g000034

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002226.1
N/A
Physical Location & Seq
Reverse (-)
162052 .. 166967
4916 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 819 bp
atgtctgcagatctcatggccgatggaatcttggacatgattctcgagcctagcgagaatgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggaaaatacggcgaaagctatcatcctaatgactcatcatatggatgattctctccagtatgagtatatgaataaagaagaccccagaaggctgcgggtctcactcgaagaaagatttcacatcgtccgtgactccctgcttcctgacctagaagattacccgctacacaatttgaatagtgtaccgggattgcaacaacaccaaacccggagaaaaccggcgttgactaaaatcgaactcaaatcggaacgagcttgccgccgcagatacaggcctcaccgccgtgcaaggccaccacagacgggtgcgcaaggaccatacgaagccaatggaagaaatttggtgaggattggtggccggaggaggaagatatgtccggtggaactttttgcagtgtttccggtcgggaagagggagagagcgactgccacctttggcgacaccgacctccactgcctccttaagtccactattgtcccccctgacaacgccataaaaggtgtcacccatggtcatgacactatggatgtcaatccccatggtcgtagcaccatggatgccacttcccatggtcctaacaccatgaagggtgatgtagtcacaaaatttacatcaaaatgtgtttcagaagctcaggcccaaccaaaatcctcattggttgtttctaaggcctctcgcttgttttacaaagcccccgttccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

272

Amino Acids

30.52

Weight (kDa)

9.28

Isoelectric Point (pI)

58.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 423
AciI CCGC 5 cut(s) 208, 275, 373, 376, 394
AcoI YGGCCR 2 cut(s) 18, 469
AcsI RAATTY 2 cut(s) 451, 719
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 416
AflII CTTAAG 1 cut(s) 575
AgsI TTSAA 1 cut(s) 289
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 5 cut(s) 80, 86, 131, 368, 746
AluI AGCT 5 cut(s) 80, 86, 131, 368, 746
Alw26I GTCTC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 6 cut(s) 18, 386, 404, 469, 750, 783
ApeKI GCWGC 2 cut(s) 104, 205
ApoI RAATTY 2 cut(s) 451, 719
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 3 cut(s) 428, 686, 751
AsuC2I CCSGG 2 cut(s) 300, 322
AsuHPI GGTGA 4 cut(s) 383, 469, 610, 716
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 2 cut(s) 428, 686
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 116, 192
BccI CCATC 1 cut(s) 17
BceAI ACGGC 2 cut(s) 138, 381
BcnI CCSGG 2 cut(s) 300, 322
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 51, 263
BfmI CTRYAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 575
BglII AGATCT 1 cut(s) 10
BisI GCNGC 4 cut(s) 105, 206, 373, 376
BlsI GCNGC 4 cut(s) 106, 207, 374, 377
Bme1390I CCNGG 2 cut(s) 300, 322
Bme18I GGWCC 2 cut(s) 428, 686
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 428, 686, 751
BmrFI CCNGG 2 cut(s) 300, 322
BmsI GCATC 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 66
BpuMI CCSGG 2 cut(s) 300, 322
BsaBI GATNNNNATC 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 4 cut(s) 622, 652, 666, 682
BsaWI WCCGGW 2 cut(s) 490, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 645
BseDI CCNNGG 4 cut(s) 622, 652, 666, 682
BseGI GGATG 4 cut(s) 135, 163, 646, 676
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMII CTCAG 1 cut(s) 761
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 490
BseXI GCAGC 2 cut(s) 116, 192
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 6 cut(s) 20, 388, 406, 471, 752, 785
BsiEI CGRYCG 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 6 cut(s) 299, 322, 332, 472, 491, 515
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 575
BsnI GGCC 6 cut(s) 20, 388, 406, 471, 752, 785
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 1 cut(s) 10
Bsp19I CCATGG 4 cut(s) 622, 652, 666, 682
BspACI CCGC 5 cut(s) 208, 275, 373, 376, 394
BspANI GGCC 6 cut(s) 20, 388, 406, 471, 752, 785
BspCNI CTCAG 1 cut(s) 760
BspHI TCATGA 1 cut(s) 628
BspMAI CTGCAG 1 cut(s) 10
BspTI CTTAAG 1 cut(s) 575
BspTNI GGTCTC 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 4 cut(s) 622, 652, 666, 682
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 4 cut(s) 622, 652, 666, 682
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 518
BstAFI CTTAAG 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 78, 370
BstDEI CTNAG 4 cut(s) 109, 747, 780, 816
BstDSI CCRYGG 4 cut(s) 622, 652, 666, 682
BstF5I GGATG 4 cut(s) 135, 163, 646, 676
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 2 cut(s) 92, 101
BstSCI CCNGG 2 cut(s) 298, 320
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 116, 192
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 6 cut(s) 20, 388, 406, 471, 752, 785
BtgI CCRYGG 4 cut(s) 622, 652, 666, 682
BtsCI GGATG 4 cut(s) 135, 163, 646, 676
BtsI GCAGTG 2 cut(s) 513, 565
BtsIMutI CAGTG 2 cut(s) 513, 565
Cac8I GCNNGC 2 cut(s) 78, 370
CciI TCATGA 1 cut(s) 628
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 428, 686, 751
Csp6I GTAC 1 cut(s) 296
CviAII CATG 8 cut(s) 16, 37, 623, 629, 653, 667, 683, 697
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 4 cut(s) 109, 747, 780, 816
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EaeI YGGCCR 2 cut(s) 18, 469
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco130I CCWWGG 4 cut(s) 622, 652, 666, 682
Eco147I AGGCCT 2 cut(s) 388, 785
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 428, 686
Eco88I CYCGRG 1 cut(s) 44
EcoT14I CCWWGG 4 cut(s) 622, 652, 666, 682
ErhI CCWWGG 4 cut(s) 622, 652, 666, 682
FaeI CATG 8 cut(s) 19, 40, 626, 632, 656, 670, 686, 700
FaqI GGGAC 1 cut(s) 575
FatI CATG 8 cut(s) 15, 36, 622, 628, 652, 666, 682, 696
FauI CCCGC 2 cut(s) 201, 282
FauNDI CATATG 1 cut(s) 153
Fnu4HI GCNGC 4 cut(s) 105, 206, 373, 376
FokI GGATG 4 cut(s) 122, 170, 653, 683
Fsp4HI GCNGC 4 cut(s) 105, 206, 373, 376
FspBI CTAG 2 cut(s) 51, 263
FspI TGCGCA 1 cut(s) 423
GlaI GCGC 1 cut(s) 423
GluI GCNGC 4 cut(s) 105, 206, 373, 376
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 6 cut(s) 20, 388, 406, 471, 752, 785
HapII CCGG 6 cut(s) 299, 322, 332, 472, 491, 515
HhaI GCGC 1 cut(s) 424
Hin1II CATG 8 cut(s) 19, 40, 626, 632, 656, 670, 686, 700
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 5 cut(s) 27, 40, 145, 161, 245
HpaII CCGG 6 cut(s) 299, 322, 332, 472, 491, 515
HphI GGTGA 4 cut(s) 383, 469, 610, 716
Hpy166II GTNNAC 3 cut(s) 296, 339, 582
Hpy188I TCNGA 2 cut(s) 361, 742
Hpy188III TCNNGA 4 cut(s) 44, 257, 520, 629
Hpy8I GTNNAC 3 cut(s) 296, 339, 582
HpyAV CCTTC 2 cut(s) 195, 694
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 4 cut(s) 8, 307, 401, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 101
HpyF3I CTNAG 4 cut(s) 109, 747, 780, 816
Hsp92II CATG 8 cut(s) 19, 40, 626, 632, 656, 670, 686, 700
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 116, 192
LweI GCATC 1 cut(s) 661
MaeI CTAG 2 cut(s) 51, 263
MaeIII GTNAC 3 cut(s) 242, 616, 712
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 6 cut(s) 203, 233, 278, 459, 493, 535
MflI RGATCY 1 cut(s) 10
MluCI AATT 3 cut(s) 283, 451, 719
MlyI GAGTC 2 cut(s) 139, 239
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 5 cut(s) 140, 156, 396, 627, 730
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 6 cut(s) 299, 322, 332, 472, 491, 515
MspR9I CCNGG 2 cut(s) 300, 322
MwoI GCNNNNNNNGC 2 cut(s) 92, 101
NciI CCSGG 2 cut(s) 300, 322
NcoI CCATGG 4 cut(s) 622, 652, 666, 682
NdeI CATATG 1 cut(s) 153
NdeII GATC 1 cut(s) 10
NlaIII CATG 8 cut(s) 19, 40, 626, 632, 656, 670, 686, 700
NmuCI GTSAC 3 cut(s) 242, 616, 712
NsbI TGCGCA 1 cut(s) 423
OliI CACNNNNGTG 1 cut(s) 396
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 628
PceI AGGCCT 2 cut(s) 388, 785
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 3 cut(s) 27, 40, 161
PkrI GCNGC 4 cut(s) 106, 207, 374, 377
PleI GAGTC 2 cut(s) 139, 239
PpsI GAGTC 2 cut(s) 139, 239
PspPI GGNCC 3 cut(s) 428, 686, 751
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
RseI CAYNNNNRTG 5 cut(s) 140, 156, 396, 627, 730
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 4 cut(s) 105, 206, 373, 376
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 3 cut(s) 428, 686, 751
SchI GAGTC 2 cut(s) 139, 239
ScrFI CCNGG 2 cut(s) 300, 322
SetI ASST 9 cut(s) 82, 88, 133, 264, 370, 548, 564, 616, 748
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 2 cut(s) 428, 686
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 5 cut(s) 140, 156, 396, 627, 730
SmlI CTYRAG 3 cut(s) 44, 81, 575
SmoI CTYRAG 3 cut(s) 44, 81, 575
Sse9I AATT 3 cut(s) 283, 451, 719
SseBI AGGCCT 2 cut(s) 388, 785
SsiI CCGC 5 cut(s) 208, 275, 373, 376, 394
SspMI CTAG 2 cut(s) 51, 263
StuI AGGCCT 2 cut(s) 388, 785
StyD4I CCNGG 2 cut(s) 298, 320
StyI CCWWGG 4 cut(s) 622, 652, 666, 682
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 3 cut(s) 45, 219, 348
TasI AATT 3 cut(s) 283, 451, 719
TauI GCSGC 2 cut(s) 375, 378
TfiI GAWTC 3 cut(s) 27, 40, 161
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 2 cut(s) 513, 572
TseFI GTSAC 3 cut(s) 242, 616, 712
TseI GCWGC 2 cut(s) 104, 205
Tsp45I GTSAC 3 cut(s) 242, 616, 712
TspDTI ATGAA 2 cut(s) 197, 713
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 2 cut(s) 513, 572
Vha464I CTTAAG 1 cut(s) 575
VpaK11BI GGWCC 2 cut(s) 428, 686
XapI RAATTY 2 cut(s) 451, 719
XhoI CTCGAG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 51, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.