Rmu_sc0002227.1_g000008

Isocitrate dehydrogenase NADP

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002227.1
N/A
Physical Location & Seq
Reverse (-)
42632 .. 43026
395 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
atgtttgcagttccagaaggaaaggataagaagactgcactggatgtatacaactttacaggggaagggggagttgcacttgccatgtgcaacgttgatgagtcaatccgtgcttttgcagaggcttctatgaccaaagcttatgagaaaaagcggcctctttatcttagcacaaaaaatactgttcaggctgttacgtggctgcacggggtaggagcggtggtggctgagtttttggtttttagttttaggacttcagggttagggcttcgtgctgataacgtgttttag

Protein Analysis

96

Amino Acids

10.45

Weight (kDa)

7.86

Isoelectric Point (pI)

10.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 154, 218
AclI AACGTT 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 240
AflIII ACRYGT 1 cut(s) 282
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 189
BisI GCNGC 2 cut(s) 155, 203
BlsI GCNGC 2 cut(s) 156, 204
BpiI GAAGAC 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse1I ACTGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 189
BsgI GTGCAG 2 cut(s) 21, 188
BshFI GGCC 1 cut(s) 157
BsnI GGCC 1 cut(s) 157
BspACI CCGC 2 cut(s) 154, 218
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 45
BssNAI GTATAC 1 cut(s) 49
Bst1107I GTATAC 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 184
BstBAI YACGTR 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 167, 228
BstF5I GGATG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 38
BstZ17I GTATAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 38
CviAII CATG 1 cut(s) 85
CviJI RGCY 7 cut(s) 125, 140, 157, 191, 202, 227, 268
CviKI_1 RGCY 7 cut(s) 125, 140, 157, 191, 202, 227, 268
DdeI CTNAG 2 cut(s) 167, 228
Eco57I CTGAAG 1 cut(s) 240
FaeI CATG 1 cut(s) 88
FaiI YATR 4 cut(s) 49, 86, 131, 144
FatI CATG 1 cut(s) 84
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 155, 203
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 155, 203
GluI GCNGC 2 cut(s) 155, 203
HaeIII GGCC 1 cut(s) 157
Hin1II CATG 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 11, 59
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 3 cut(s) 93, 197, 282
HpyCH4V TGCA 6 cut(s) 8, 38, 77, 90, 119, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 167, 228
HpySE526I ACGT 3 cut(s) 93, 197, 282
Hsp92II CATG 1 cut(s) 88
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 26, 27, 45, 173, 243
Lsp1109I GCAGC 1 cut(s) 189
MaeII ACGT 3 cut(s) 93, 197, 282
MaeIII GTNAC 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 218
MboII GAAGA 1 cut(s) 43
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 115, 168
MwoI GCNNNNNNNGC 1 cut(s) 224
NlaIII CATG 1 cut(s) 88
PkrI GCNGC 2 cut(s) 156, 204
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Ppu21I YACGTR 1 cut(s) 198
Psp1406I AACGTT 1 cut(s) 93
SatI GCNGC 2 cut(s) 155, 203
SchI GAGTC 1 cut(s) 110
SetI ASST 4 cut(s) 96, 142, 200, 285
SsiI CCGC 2 cut(s) 154, 218
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 3 cut(s) 96, 200, 285
TauI GCSGC 1 cut(s) 157
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.