Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002248.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

33845 .. 37803

Gene Structure 3959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgaatgagggtgtcaaggcacccaccaacctgacccaattcggaatagaattagacctatttaaatgggcccaaaagatattgtgcccatatagtccaagcccaggcgcccaaactcgagataacaagacagaagccctagcccttggtcaccaggctgtccactccgctgttaaggcccccgacaatcgacctgtccatcgcagcattgattgctgctcagaatctgagagcccgacaacctgtttgcaccgacgcacttcacaaacgcgtgagaagtccgccgtagtgtcgctctccgtcctcaacaacacctcaatccttgaagggaacgagagctcgatgtcaagcaccgctaggctcgacagaatccgattggagaagacgtcgctgctgttgaactcgaaaccttcaaaccctaggaacaaaaccaaaaacatggaggtgggtcagatgcagagacagtgggttgactacacaaagtccttgtttctggaggggcttttggatggacagtttctgcagcttcaacagcttcaagacgagagcaacccagattttgttgtggaagtggtgtctctattctttgatgattctgagaagcttctcaatgatatcacccgagctctagagcagccaagtgtagacttcaaaaagattggtgcccatgttcaccagttcaagggtagcagctccagtgttggtgcacaaagagttaaaaatggctgcattgctttccgcaacttctgcgaggaacaaaacatcgaagggtgtatcagatgtcttcaacaattaaagcaagagtactaccttgtgaagaacaagcttgaaactcttttcgcgatggagcaacaaatagtggcagctggtgggtcaattcctatgttggaatcaagtttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

300

Amino Acids

33.57

Weight (kDa)

6.61

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	190 - 273	1e-14	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	389
AccB1I	GGYRCC	3 cut(s)	19, 107, 662
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	2 cut(s)	271, 842
AciI	CCGC	4 cut(s)	168, 282, 354, 739
AcyI	GRCGYC	2 cut(s)	108, 386
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	2 cut(s)	104, 682
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	9 cut(s)	326, 400, 414, 530, 539, 652, 682, 788, 830
AjnI	CCWGG	2 cut(s)	103, 153
AluBI	AGCT	8 cut(s)	339, 526, 535, 604, 626, 693, 826, 866
AluI	AGCT	8 cut(s)	339, 526, 535, 604, 626, 693, 826, 866
Alw21I	GWGCWC	3 cut(s)	341, 628, 709
Alw26I	GTCTC	2 cut(s)	454, 582
Alw44I	GTGCAC	1 cut(s)	705
AlwNI	CAGNNNCTG	2 cut(s)	227, 520
Ama87I	CYCGRG	2 cut(s)	117, 621
AoxI	GGCC	2 cut(s)	69, 177
ApaI	GGGCCC	1 cut(s)	73
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	8 cut(s)	204, 216, 391, 523, 634, 690, 726, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AspA2I	CCTAGG	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	69, 70, 178
AsuHPI	GGTGA	3 cut(s)	143, 610, 665
AvaI	CYCGRG	2 cut(s)	117, 621
AvrII	CCTAGG	1 cut(s)	419
BaeGI	GKGCMC	4 cut(s)	73, 89, 667, 709
BanI	GGYRCC	3 cut(s)	19, 107, 662
BanII	GRGCYC	4 cut(s)	73, 236, 341, 628
BbsI	GAAGAC	2 cut(s)	389, 776
Bbv12I	GWGCWC	3 cut(s)	341, 628, 709
BbvI	GCAGC	8 cut(s)	203, 216, 378, 535, 646, 702, 713, 875
BccI	CCATC	3 cut(s)	207, 503, 838
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	2 cut(s)	105, 155
BcoDI	GTCTC	2 cut(s)	454, 582
BfaI	CTAG	4 cut(s)	140, 357, 420, 629
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	8 cut(s)	205, 217, 392, 524, 635, 691, 727, 864
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	8 cut(s)	206, 218, 393, 525, 636, 692, 728, 865
BmcAI	AGTACT	1 cut(s)	806
Bme1390I	CCNGG	2 cut(s)	105, 155
BmeT110I	CYCGRG	2 cut(s)	117, 621
BmgT120I	GGNCC	3 cut(s)	69, 70, 178
BmiI	GGNNCC	5 cut(s)	21, 71, 109, 180, 664
BmrFI	CCNGG	2 cut(s)	105, 155
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	389, 776
BpmI	CTGGAG	2 cut(s)	515, 679
BsaHI	GRCGYC	2 cut(s)	108, 386
BsaJI	CCNNGG	3 cut(s)	103, 145, 419
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 682
Bse1I	ACTGG	2 cut(s)	676, 696
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	2 cut(s)	105, 155
BseDI	CCNNGG	3 cut(s)	103, 145, 419
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	2 cut(s)	104, 682
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	3 cut(s)	219, 234, 588
BseNI	ACTGG	2 cut(s)	676, 696
BseSI	GKGCMC	4 cut(s)	73, 89, 667, 709
BseXI	GCAGC	8 cut(s)	203, 216, 378, 535, 646, 702, 713, 875
Bsh1236I	CGCG	2 cut(s)	271, 842
BshFI	GGCC	2 cut(s)	71, 179
BshNI	GGYRCC	3 cut(s)	19, 107, 662
BsiHKAI	GWGCWC	3 cut(s)	341, 628, 709
BsiHKCI	CYCGRG	2 cut(s)	117, 621
BslI	CCNNNNNNNGG	2 cut(s)	104, 682
BsmAI	GTCTC	2 cut(s)	454, 582
BsnI	GGCC	2 cut(s)	71, 179
BsoBI	CYCGRG	2 cut(s)	117, 621
Bsp120I	GGGCCC	1 cut(s)	69
Bsp1286I	GDGCHC	7 cut(s)	73, 89, 236, 341, 628, 667, 709
Bsp68I	TCGCGA	1 cut(s)	842
BspACI	CCGC	4 cut(s)	168, 282, 354, 739
BspANI	GGCC	2 cut(s)	71, 179
BspCNI	CTCAG	3 cut(s)	220, 233, 589
BspFNI	CGCG	2 cut(s)	271, 842
BspLI	GGNNCC	5 cut(s)	21, 71, 109, 180, 664
BspMAI	CTGCAG	1 cut(s)	525
BspT107I	GGYRCC	3 cut(s)	19, 107, 662
BsrDI	GCAATG	1 cut(s)	729
BsrI	ACTGG	2 cut(s)	676, 696
BssECI	CCNNGG	3 cut(s)	103, 145, 419
BssNI	GRCGYC	2 cut(s)	108, 386
BssT1I	CCWWGG	2 cut(s)	145, 419
Bst2UI	CCWGG	2 cut(s)	105, 155
Bst4CI	ACNGT	2 cut(s)	465, 516
BstACI	GRCGYC	2 cut(s)	108, 386
BstAPI	GCANNNNNTGC	2 cut(s)	213, 747
BstDEI	CTNAG	3 cut(s)	220, 228, 597
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	2 cut(s)	271, 842
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	454, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 213, 532, 747
BstNI	CCWGG	2 cut(s)	105, 155
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	103, 153
BstSFI	CTRYAG	1 cut(s)	521
BstSLI	GKGCMC	4 cut(s)	73, 89, 667, 709
BstUI	CGCG	2 cut(s)	271, 842
BstV1I	GCAGC	8 cut(s)	203, 216, 378, 535, 646, 702, 713, 875
BstV2I	GAAGAC	2 cut(s)	389, 776
BstXI	CCANNNNNNTGG	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	71, 179
BtgZI	GCGATG	2 cut(s)	185, 857
BtsCI	GGATG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	470, 703
BtuMI	TCGCGA	1 cut(s)	842
CaiI	CAGNNNCTG	2 cut(s)	227, 520
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	69, 70, 178
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	2 cut(s)	439, 668
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	3 cut(s)	220, 228, 597
DinI	GGCGCC	1 cut(s)	109
DraI	TTTAAA	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	271
Ecl136II	GAGCTC	2 cut(s)	339, 626
Eco130I	CCWWGG	2 cut(s)	145, 419
Eco24I	GRGCYC	4 cut(s)	73, 236, 341, 628
Eco32I	GATATC	1 cut(s)	616
Eco53kI	GAGCTC	2 cut(s)	339, 626
Eco88I	CYCGRG	2 cut(s)	117, 621
Eco91I	GGTNACC	1 cut(s)	149
EcoICRI	GAGCTC	2 cut(s)	339, 626
EcoO109I	RGGNCCY	1 cut(s)	178
EcoO65I	GGTNACC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	103, 153
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	2 cut(s)	145, 419
EcoT38I	GRGCYC	4 cut(s)	73, 236, 341, 628
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	2 cut(s)	145, 419
FaeI	CATG	2 cut(s)	442, 671
FaiI	YATR	5 cut(s)	91, 93, 440, 669, 884
FatI	CATG	2 cut(s)	438, 667
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	8 cut(s)	205, 217, 392, 524, 635, 691, 727, 864
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	4 cut(s)	73, 236, 341, 628
Fsp4HI	GCNGC	8 cut(s)	205, 217, 392, 524, 635, 691, 727, 864
FspBI	CTAG	4 cut(s)	140, 357, 420, 629
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	8 cut(s)	205, 217, 392, 524, 635, 691, 727, 864
GsuI	CTGGAG	2 cut(s)	515, 679
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	71, 179
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	2 cut(s)	108, 386
Hin1II	CATG	2 cut(s)	442, 671
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	2 cut(s)	602, 824
HinfI	GANTC	4 cut(s)	224, 369, 593, 890
HphI	GGTGA	3 cut(s)	143, 610, 665
Hpy166II	GTNNAC	5 cut(s)	163, 472, 646, 673, 707
Hpy188I	TCNGA	7 cut(s)	44, 223, 229, 374, 453, 598, 779
Hpy188III	TCNNGA	5 cut(s)	119, 494, 539, 629, 841
Hpy8I	GTNNAC	5 cut(s)	163, 472, 646, 673, 707
Hpy99I	CGWCG	2 cut(s)	258, 391
HpyAV	CCTTC	3 cut(s)	320, 420, 761
HpyCH4III	ACNGT	2 cut(s)	465, 516
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	5 cut(s)	250, 457, 523, 707, 729
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 213, 532, 747
HpyF3I	CTNAG	3 cut(s)	220, 228, 597
HpySE526I	ACGT	1 cut(s)	386
Hsp92I	GRCGYC	2 cut(s)	108, 386
Hsp92II	CATG	2 cut(s)	442, 671
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	698, 847
Lsp1109I	GCAGC	8 cut(s)	203, 216, 378, 535, 646, 702, 713, 875
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	4 cut(s)	140, 357, 420, 629
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	3 cut(s)	394, 776, 829
MhlI	GDGCHC	7 cut(s)	73, 89, 236, 341, 628, 667, 709
MluCI	AATT	4 cut(s)	38, 50, 791, 876
MluI	ACGCGT	1 cut(s)	269
Mly113I	GGCGCC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	867
MnlI	CCTC	5 cut(s)	314, 325, 436, 490, 745
MseI	TTAA	4 cut(s)	63, 174, 717, 794
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	2 cut(s)	170, 866
MspR9I	CCNGG	2 cut(s)	105, 155
MvaI	CCWGG	2 cut(s)	105, 155
MvnI	CGCG	2 cut(s)	271, 842
MwoI	GCNNNNNNNGC	4 cut(s)	176, 213, 532, 747
NarI	GGCGCC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	442, 671
NlaIV	GGNNCC	5 cut(s)	21, 71, 109, 180, 664
NmuCI	GTSAC	1 cut(s)	149
NruI	TCGCGA	1 cut(s)	842
PaeR7I	CTCGAG	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	224, 369, 593, 890
PkrI	GCNGC	8 cut(s)	206, 218, 393, 525, 636, 692, 728, 865
PluTI	GGCGCC	1 cut(s)	111
Psp124BI	GAGCTC	2 cut(s)	341, 628
Psp6I	CCWGG	2 cut(s)	103, 153
PspEI	GGTNACC	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	103, 153
PspN4I	GGNNCC	5 cut(s)	21, 71, 109, 180, 664
PspOMI	GGGCCC	1 cut(s)	69
PspPI	GGNCC	3 cut(s)	69, 70, 178
PstI	CTGCAG	1 cut(s)	525
PstNI	CAGNNNCTG	2 cut(s)	227, 520
PvuII	CAGCTG	1 cut(s)	866
RruI	TCGCGA	1 cut(s)	842
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	2 cut(s)	341, 628
SaqAI	TTAA	4 cut(s)	63, 174, 717, 794
SatI	GCNGC	8 cut(s)	205, 217, 392, 524, 635, 691, 727, 864
Sau96I	GGNCC	3 cut(s)	69, 70, 178
ScaI	AGTACT	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	105, 155
SduI	GDGCHC	7 cut(s)	73, 89, 236, 341, 628, 667, 709
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	1 cut(s)	521
SfoI	GGCGCC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	117
SmiI	ATTTAAAT	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	4 cut(s)	38, 50, 791, 876
SsiI	CCGC	4 cut(s)	168, 282, 354, 739
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	4 cut(s)	140, 357, 420, 629
SstI	GAGCTC	2 cut(s)	341, 628
StyD4I	CCNGG	2 cut(s)	103, 153
StyI	CCWWGG	2 cut(s)	145, 419
SwaI	ATTTAAAT	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	465, 516
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	6 cut(s)	118, 190, 341, 363, 404, 765
TasI	AATT	4 cut(s)	38, 50, 791, 876
TatI	WGTACW	1 cut(s)	804
TfiI	GAWTC	4 cut(s)	224, 369, 593, 890
Tru1I	TTAA	4 cut(s)	63, 174, 717, 794
Tru9I	TTAA	4 cut(s)	63, 174, 717, 794
TscAI	CASTG	2 cut(s)	470, 703
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	8 cut(s)	204, 216, 391, 523, 634, 690, 726, 863
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	2 cut(s)	470, 703
VneI	GTGCAC	1 cut(s)	705
XbaI	TCTAGA	1 cut(s)	628
XhoI	CTCGAG	1 cut(s)	117
XmaJI	CCTAGG	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	4 cut(s)	140, 357, 420, 629
ZraI	GACGTC	1 cut(s)	387
ZrmI	AGTACT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.