Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002249.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 472

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 197 bp

atgagcagttggacgaagctggatgaggatcttggaccggagcgcggggacgatgattttttaacagatgatgaagagaaccaagcacacagaaacaactatgagccttccgaagccgaaactgaatctgaagtaggcagacctgagggcattgccattagtgcacctaacaataatgcatggcctcagagctactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

65

Amino Acids

7.33

Weight (kDa)

4.05

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	19, 192
AluI	AGCT	2 cut(s)	19, 192
Alw21I	GWGCWC	1 cut(s)	166
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	35
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	27
BseGI	GGATG	1 cut(s)	28
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	45
BspPI	GGATC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	150
BssMI	GATC	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	144, 186
BstF5I	GGATG	1 cut(s)	28
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	28
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	5 cut(s)	19, 106, 116, 184, 192
CviKI_1	RGCY	5 cut(s)	19, 106, 116, 184, 192
DdeI	CTNAG	2 cut(s)	144, 186
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	150
Eco81I	CCTNAGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	1 cut(s)	183
FaiI	YATR	2 cut(s)	102, 181
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	179
FauI	CCCGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	112, 130, 189
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	164, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	144, 186
Hsp92II	CATG	1 cut(s)	183
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	3 cut(s)	5, 51, 156
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	166
MnlI	CCTC	3 cut(s)	19, 139, 195
Mph1103I	ATGCAT	1 cut(s)	181
MseI	TTAA	1 cut(s)	62
MspI	CCGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	4 cut(s)	21, 145, 169, 194
SgeI	CNNG	8 cut(s)	32, 44, 50, 56, 58, 95, 155, 192
SinI	GGWCC	1 cut(s)	35
SsiI	CCGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	87
VneI	GTGCAC	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.