Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002258.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

32178 .. 35754

Gene Structure 3577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgtgtgagggacttgcttttggaatattcattgctgaagatgcgtatacatttctggtcaattggtttgaaaggtttcctcagtacaagcacagagatttctacattgctggagaaagttatgcaggtcattatgttcctcagctgtctcaattggtttatgagagaaataagggaattcagaatccagatatcaattttaaagggtttatggtaggaaatgctgtaactgatgattaccatgatcttgttggcacattcgaacactggtggacacatggtttaatttctgattccacctatcgtgagctgcgagtcaagtgttacaatgtttccactcggcatccatcactggcttgcttggaggccctcgaagtagcagattcagagcagggaaacattgacccatacagcatttacacccgtccttgtaatagtactgcagcactaaagcgcaacttgaggggtcattatccatggatgtccagagcatatgatccatgcactgcgatgtattctgcaaagtattttaaccatccagaagtccaaaaggcactccatgcaaatgtaactggagtttcgtacccgtggacaacatgcagtgtagttattgcaaacaactggtcggattctccactatctgtgcttccaatttatcgagagctcattgctgcgggtctcaagatatgggtatacagtggagatactgattcagtggttcctgtgactgccacgcgttactccataaacgcccttaagttaccgaccatcaccaattggttcccatggtatgatactggcaaggttggtggctggagccaaatatacaaggggctgacattagtcaccattaccggagctggacatcaggtcccactccttcgacctcgagaagctttcattgttttcagatcatttttggagaacaagcccatgcctagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

314

Amino Acids

35.74

Weight (kDa)

6.79

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	11 - 309	3.3e-88	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
AccI	GTMKAC	2 cut(s)	47, 693
AccII	CGCG	1 cut(s)	736
AciI	CCGC	1 cut(s)	674
AclWI	GGATC	1 cut(s)	491
AcsI	RAATTY	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	3 cut(s)	86, 439, 584
AflII	CTTAAG	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	734
AgsI	TTSAA	1 cut(s)	71
AhdI	GACNNNNNGTC	1 cut(s)	869
AluBI	AGCT	5 cut(s)	145, 310, 664, 860, 896
AluI	AGCT	5 cut(s)	145, 310, 664, 860, 896
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	2 cut(s)	153, 683
AlwI	GGATC	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	888
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	3 cut(s)	310, 443, 671
ApoI	RAATTY	1 cut(s)	177
ArsI	GACNNNNNNTTYG	2 cut(s)	608, 640
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	2 cut(s)	367, 871
AsuHPI	GGTGA	2 cut(s)	763, 838
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	888
AvaII	GGWCC	1 cut(s)	871
BanII	GRGCYC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	666
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	297, 455, 658
BccI	CCATC	3 cut(s)	355, 543, 776
BcoDI	GTCTC	2 cut(s)	153, 683
BfaI	CTAG	1 cut(s)	939
BfmI	CTRYAG	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	755
BfuAI	ACCTGC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	311, 444, 672
BlsI	GCNGC	3 cut(s)	312, 445, 673
BmcAI	AGTACT	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	871
BmeRI	GACNNNNNGTC	1 cut(s)	869
BmeT110I	CYCGRG	1 cut(s)	888
BmgT120I	GGNCC	2 cut(s)	367, 871
BmiI	GGNNCC	4 cut(s)	720, 782, 818, 873
BmsI	GCATC	2 cut(s)	31, 352
BoxI	GACNNNNGTC	1 cut(s)	842
BpmI	CTGGAG	3 cut(s)	132, 594, 835
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	481, 665
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	3 cut(s)	476, 587, 785
BsaWI	WCCGGW	1 cut(s)	854
Bse1I	ACTGG	5 cut(s)	272, 357, 577, 626, 802
Bse3DI	GCAATG	3 cut(s)	30, 105, 666
BseDI	CCNNGG	3 cut(s)	476, 587, 785
BseGI	GGATG	3 cut(s)	343, 486, 535
BseMI	GCAATG	3 cut(s)	30, 105, 666
BseMII	CTCAG	2 cut(s)	95, 155
BseNI	ACTGG	5 cut(s)	272, 357, 577, 626, 802
BseXI	GCAGC	3 cut(s)	297, 455, 658
Bsh1236I	CGCG	1 cut(s)	736
BshFI	GGCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	666
BsiHKCI	CYCGRG	1 cut(s)	888
BsiSI	CCGG	1 cut(s)	855
BslFI	GGGAC	2 cut(s)	24, 857
BsmAI	GTCTC	2 cut(s)	153, 683
BsmFI	GGGAC	2 cut(s)	24, 857
BsnI	GGCC	1 cut(s)	368
Bso31I	GGTCTC	1 cut(s)	683
BsoBI	CYCGRG	1 cut(s)	888
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	244, 496, 911
Bsp19I	CCATGG	2 cut(s)	476, 785
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	94, 154
BspFNI	CGCG	1 cut(s)	736
BspLI	GGNNCC	4 cut(s)	720, 782, 818, 873
BspMAI	CTGCAG	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	683
BsrDI	GCAATG	3 cut(s)	30, 105, 666
BsrI	ACTGG	5 cut(s)	272, 357, 577, 626, 802
BssECI	CCNNGG	3 cut(s)	476, 587, 785
BssMI	GATC	3 cut(s)	244, 496, 911
BssNAI	GTATAC	2 cut(s)	48, 694
BssT1I	CCWWGG	2 cut(s)	476, 785
Bst1107I	GTATAC	2 cut(s)	48, 694
Bst4CI	ACNGT	1 cut(s)	698
BstAFI	CTTAAG	1 cut(s)	755
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	81, 141
BstDSI	CCRYGG	3 cut(s)	476, 587, 785
BstF5I	GGATG	3 cut(s)	343, 486, 535
BstFNI	CGCG	1 cut(s)	736
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	3 cut(s)	247, 499, 914
BstMAI	GTCTC	2 cut(s)	153, 683
BstMBI	GATC	3 cut(s)	244, 496, 911
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 560
BstNSI	RCATGY	1 cut(s)	600
BstPAI	GACNNNNGTC	1 cut(s)	842
BstSFI	CTRYAG	1 cut(s)	441
BstUI	CGCG	1 cut(s)	736
BstV1I	GCAGC	3 cut(s)	297, 455, 658
BstZ17I	GTATAC	2 cut(s)	48, 694
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	3 cut(s)	476, 587, 785
BtgZI	GCGATG	1 cut(s)	524
BtsCI	GGATG	3 cut(s)	343, 486, 535
BtsI	GCAGTG	2 cut(s)	504, 607
BtsIMutI	CAGTG	6 cut(s)	265, 350, 504, 607, 703, 720
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	367, 871
Csp6I	GTAC	3 cut(s)	85, 438, 583
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	8 cut(s)	242, 278, 477, 501, 560, 597, 786, 934
CviQI	GTAC	3 cut(s)	85, 438, 583
DdeI	CTNAG	2 cut(s)	81, 141
DpnI	GATC	3 cut(s)	246, 498, 913
DpnII	GATC	3 cut(s)	244, 496, 911
DraI	TTTAAA	1 cut(s)	202
DriI	GACNNNNNGTC	1 cut(s)	869
Eam1105I	GACNNNNNGTC	1 cut(s)	869
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	2 cut(s)	476, 785
Eco24I	GRGCYC	1 cut(s)	666
Eco31I	GGTCTC	1 cut(s)	683
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	871
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	888
EcoICRI	GAGCTC	1 cut(s)	664
EcoO109I	RGGNCCY	2 cut(s)	367, 871
EcoRI	GAATTC	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	476, 785
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	2 cut(s)	476, 785
FaeI	CATG	8 cut(s)	245, 281, 480, 504, 563, 600, 789, 937
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	2 cut(s)	24, 857
FatI	CATG	8 cut(s)	241, 277, 476, 500, 559, 596, 785, 933
FauI	CCCGC	1 cut(s)	667
FauNDI	CATATG	1 cut(s)	493
FblI	GTMKAC	2 cut(s)	47, 693
Fnu4HI	GCNGC	3 cut(s)	311, 444, 672
FokI	GGATG	3 cut(s)	330, 493, 522
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	3 cut(s)	311, 444, 672
FspBI	CTAG	1 cut(s)	939
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	3 cut(s)	311, 444, 672
GsuI	CTGGAG	3 cut(s)	132, 594, 835
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	855
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	8 cut(s)	245, 281, 480, 504, 563, 600, 789, 937
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	894
HinfI	GANTC	6 cut(s)	184, 293, 315, 383, 629, 710
HpaII	CCGG	1 cut(s)	855
HphI	GGTGA	2 cut(s)	763, 838
Hpy166II	GTNNAC	4 cut(s)	48, 273, 591, 694
Hpy188I	TCNGA	5 cut(s)	183, 292, 388, 628, 911
Hpy188III	TCNNGA	7 cut(s)	188, 305, 486, 539, 659, 682, 890
Hpy8I	GTNNAC	4 cut(s)	48, 273, 591, 694
HpyAV	CCTTC	1 cut(s)	890
HpyCH4III	ACNGT	1 cut(s)	698
HpyCH4V	TGCA	7 cut(s)	125, 443, 504, 521, 563, 600, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 560
HpyF3I	CTNAG	2 cut(s)	81, 141
Hsp92II	CATG	8 cut(s)	245, 281, 480, 504, 563, 600, 789, 937
HspAI	GCGC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	244, 496, 911
LmnI	GCTCC	2 cut(s)	816, 857
Lsp1109I	GCAGC	3 cut(s)	297, 455, 658
LweI	GCATC	2 cut(s)	31, 352
MaeI	CTAG	1 cut(s)	939
MaeIII	GTNAC	7 cut(s)	226, 323, 568, 724, 737, 759, 844
MalI	GATC	3 cut(s)	246, 498, 913
MboI	GATC	3 cut(s)	244, 496, 911
MboII	GAAGA	1 cut(s)	50
MfeI	CAATTG	3 cut(s)	61, 152, 775
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	7 cut(s)	61, 152, 177, 196, 285, 651, 775
MluI	ACGCGT	1 cut(s)	734
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	6 cut(s)	90, 150, 358, 380, 456, 897
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	5 cut(s)	201, 284, 531, 756, 943
MslI	CAYNNNNRTG	2 cut(s)	509, 564
MspA1I	CMGCKG	1 cut(s)	145
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	1 cut(s)	855
MunI	CAATTG	3 cut(s)	61, 152, 775
MvnI	CGCG	1 cut(s)	736
MwoI	GCNNNNNNNGC	2 cut(s)	41, 560
NcoI	CCATGG	2 cut(s)	476, 785
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	3 cut(s)	244, 496, 911
NlaIII	CATG	8 cut(s)	245, 281, 480, 504, 563, 600, 789, 937
NlaIV	GGNNCC	4 cut(s)	720, 782, 818, 873
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	724, 844
NspI	RCATGY	1 cut(s)	600
NspV	TTCGAA	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	5 cut(s)	184, 293, 383, 629, 710
PkrI	GCNGC	3 cut(s)	312, 445, 673
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	871
PshAI	GACNNNNGTC	1 cut(s)	842
Psp124BI	GAGCTC	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	871
PspN4I	GGNNCC	4 cut(s)	720, 782, 818, 873
PspPI	GGNCC	2 cut(s)	367, 871
PspPPI	RGGWCCY	1 cut(s)	871
PstI	CTGCAG	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	3 cut(s)	86, 439, 584
RsaNI	GTAC	3 cut(s)	85, 438, 583
RseI	CAYNNNNRTG	2 cut(s)	509, 564
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	5 cut(s)	201, 284, 531, 756, 943
SatI	GCNGC	3 cut(s)	311, 444, 672
Sau3AI	GATC	3 cut(s)	244, 496, 911
Sau96I	GGNCC	2 cut(s)	367, 871
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	2 cut(s)	31, 352
SfcI	CTRYAG	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	888
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	1 cut(s)	871
SlaI	CTCGAG	1 cut(s)	888
SmiMI	CAYNNNNRTG	2 cut(s)	509, 564
SmlI	CTYRAG	4 cut(s)	460, 680, 755, 888
SmoI	CTYRAG	4 cut(s)	460, 680, 755, 888
Sse9I	AATT	7 cut(s)	61, 152, 177, 196, 285, 651, 775
SsiI	CCGC	1 cut(s)	674
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	1 cut(s)	939
SstI	GAGCTC	1 cut(s)	666
StyI	CCWWGG	2 cut(s)	476, 785
TaaI	ACNGT	1 cut(s)	698
TaqI	TCGA	5 cut(s)	261, 372, 658, 883, 889
TasI	AATT	7 cut(s)	61, 152, 177, 196, 285, 651, 775
TatI	WGTACW	2 cut(s)	84, 437
TfiI	GAWTC	5 cut(s)	184, 293, 383, 629, 710
Tru1I	TTAA	5 cut(s)	201, 284, 531, 756, 943
Tru9I	TTAA	5 cut(s)	201, 284, 531, 756, 943
TscAI	CASTG	6 cut(s)	272, 357, 511, 607, 703, 720
TseFI	GTSAC	2 cut(s)	724, 844
TseI	GCWGC	3 cut(s)	310, 443, 671
Tsp45I	GTSAC	2 cut(s)	724, 844
TspDTI	ATGAA	2 cut(s)	19, 889
TspRI	CASTG	6 cut(s)	272, 357, 511, 607, 703, 720
Vha464I	CTTAAG	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	871
XapI	RAATTY	1 cut(s)	177
XceI	RCATGY	1 cut(s)	600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XhoI	CTCGAG	1 cut(s)	888
XmiI	GTMKAC	2 cut(s)	47, 693
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	939
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.