Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002258.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

38806 .. 40966

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgggttaccaaagcccactatttgcatctctttgcagtttgctactttcatttggagcttgttttgcttcttctattcaagatcaattgagggatagaataacacagttgccagggcagccagccaatgtggggtttcgtcagtattctggttatgtcactgccaatgagcaagctgggagagcattgttttactggttggttgagtccccagcgcatcgtgaaccggagtccagaccgctagtgttgtggctcgctggtggtccaggttgttcttctgttggtcatggatcagctgaagagattggaccttttcatattagacctgatggagagaccctttacatgaatccatatgcttggaacaatttggcaaatttgcttttccttgaatctccagctggtgttggtttttcatacacgaatacgtcttcagatttgtatacagctggagaccagagaacaggtaaaaaggaaatccctgatttgacttttgcaatatattctaacacccctcctcagcttgatgggaaggcgggtcatcaagctggactagttgaactgatgaagaacagagaggtgacagatggagaggacccaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

201

Amino Acids

21.85

Weight (kDa)

4.9

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	38 - 158	2.8e-49	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	443
AciI	CCGC	2 cut(s)	239, 536
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	2 cut(s)	318, 417
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	80, 392, 560
AhlI	ACTAGT	1 cut(s)	553
AjnI	CCWGG	2 cut(s)	112, 265
AluBI	AGCT	7 cut(s)	59, 176, 296, 401, 449, 523, 548
AluI	AGCT	7 cut(s)	59, 176, 296, 401, 449, 523, 548
Alw26I	GTCTC	2 cut(s)	329, 447
AlwI	GGATC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	3 cut(s)	263, 308, 595
AsuHPI	GGTGA	1 cut(s)	592
AvaII	GGWCC	3 cut(s)	263, 308, 595
BbsI	GAAGAC	1 cut(s)	423
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	323, 521, 581
BciT130I	CCWGG	2 cut(s)	114, 267
BcoDI	GTCTC	2 cut(s)	329, 447
BcuI	ACTAGT	1 cut(s)	553
BfaI	CTAG	2 cut(s)	242, 554
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	114, 267
Bme18I	GGWCC	3 cut(s)	263, 308, 595
BmgT120I	GGNCC	3 cut(s)	263, 308, 595
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	114, 267
BmsI	GCATC	2 cut(s)	35, 226
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	2 cut(s)	381, 471
Bpu10I	CCTNAGC	1 cut(s)	519
BsaI	GGTCTC	2 cut(s)	329, 447
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	114, 267
BseDI	CCNNGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	2 cut(s)	176, 211
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	329, 447
BsmFI	GGGAC	1 cut(s)	193
Bso31I	GGTCTC	2 cut(s)	329, 447
Bsp143I	GATC	2 cut(s)	82, 290
BspACI	CCGC	2 cut(s)	239, 536
BspCNI	CTCAG	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	298
BspTNI	GGTCTC	2 cut(s)	329, 447
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	82, 290
BssNAI	GTATAC	1 cut(s)	444
Bst1107I	GTATAC	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	114, 267
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	123, 174, 255
BstDEI	CTNAG	1 cut(s)	519
BstEII	GGTNACC	1 cut(s)	5
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	85, 293
BstMAI	GTCTC	2 cut(s)	329, 447
BstMBI	GATC	2 cut(s)	82, 290
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 118, 182
BstNI	CCWGG	2 cut(s)	114, 267
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	112, 265
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	360
BstZ17I	GTATAC	1 cut(s)	444
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	3 cut(s)	123, 174, 255
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	3 cut(s)	263, 308, 595
CviAII	CATG	3 cut(s)	287, 346, 603
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	2 cut(s)	84, 292
DpnII	GATC	2 cut(s)	82, 290
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco31I	GGTCTC	2 cut(s)	329, 447
Eco47I	GGWCC	3 cut(s)	263, 308, 595
Eco57I	CTGAAG	2 cut(s)	318, 417
Eco91I	GGTNACC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	595
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	112, 265
FaeI	CATG	3 cut(s)	290, 349, 606
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	3 cut(s)	286, 345, 602
FauI	CCCGC	1 cut(s)	529
FauNDI	CATATG	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	242, 554
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	119
GsaI	CCCAGC	2 cut(s)	180, 215
GsuI	CTGGAG	2 cut(s)	381, 471
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	290, 349, 606
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	4 cut(s)	206, 230, 349, 392
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	2 cut(s)	224, 444
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	3 cut(s)	80, 221, 234
Hpy8I	GTNNAC	2 cut(s)	224, 444
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	3 cut(s)	26, 36, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 118, 182
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	3 cut(s)	290, 349, 606
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	82, 290
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	2 cut(s)	35, 226
MaeI	CTAG	2 cut(s)	242, 554
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	3 cut(s)	5, 157, 580
MalI	GATC	2 cut(s)	84, 292
MboI	GATC	2 cut(s)	82, 290
MboII	GAAGA	5 cut(s)	63, 267, 311, 423, 580
MfeI	CAATTG	1 cut(s)	86
MluCI	AATT	3 cut(s)	86, 367, 376
MlyI	GAGTC	2 cut(s)	215, 239
MnlI	CCTC	5 cut(s)	84, 525, 528, 571, 586
MspA1I	CMGCKG	3 cut(s)	296, 401, 449
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	114, 267
MunI	CAATTG	1 cut(s)	86
MvaI	CCWGG	2 cut(s)	114, 267
MwoI	GCNNNNNNNGC	3 cut(s)	65, 118, 182
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	2 cut(s)	82, 290
NlaIII	CATG	3 cut(s)	290, 349, 606
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	2 cut(s)	157, 580
PfeI	GAWTC	2 cut(s)	349, 392
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	214, 238
PpsI	GAGTC	2 cut(s)	214, 238
PpuMI	RGGWCCY	1 cut(s)	595
Psp5II	RGGWCCY	1 cut(s)	595
Psp6I	CCWGG	2 cut(s)	112, 265
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	2 cut(s)	176, 211
PspGI	CCWGG	2 cut(s)	112, 265
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	3 cut(s)	263, 308, 595
PspPPI	RGGWCCY	1 cut(s)	595
PvuII	CAGCTG	3 cut(s)	296, 401, 449
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	82, 290
Sau96I	GGNCC	3 cut(s)	263, 308, 595
SchI	GAGTC	2 cut(s)	215, 239
ScrFI	CCNGG	2 cut(s)	114, 267
SfaNI	GCATC	2 cut(s)	35, 226
SinI	GGWCC	3 cut(s)	263, 308, 595
SpeI	ACTAGT	1 cut(s)	553
Sse9I	AATT	3 cut(s)	86, 367, 376
SsiI	CCGC	2 cut(s)	239, 536
SspMI	CTAG	2 cut(s)	242, 554
StyD4I	CCNGG	2 cut(s)	112, 265
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	431
TasI	AATT	3 cut(s)	86, 367, 376
TfiI	GAWTC	2 cut(s)	349, 392
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	2 cut(s)	157, 580
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	157, 580
TspDTI	ATGAA	5 cut(s)	39, 305, 362, 405, 581
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	3 cut(s)	263, 308, 595
XapI	RAATTY	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	443
XspI	CTAG	2 cut(s)	242, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.