Rmu_sc0002260.1_g000048

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002260.1
N/A
Physical Location & Seq
Forward (+)
205868 .. 208332
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
atgggtgttttggagctagccatgccattaaaacaaatagcagccgatgttgacatgcagatcgttgaagtcgagttgctcaaggcctttgtccctgatgccgacaatctcgtctccaagattgcttcccaagcagttaagagtgccgagattcttgaaggggatggaggtgttggaaccttcaagaagatcaacctcggcgaaggaagtgaatacagctatgtgaagcaccagattgatggaattgacaaagacaactttgtgtacaggtacagcatgattgaaggagatgctatctcaaacaaaattgagaagatctcctatgagactaagttggtggcatcttccgatggaggctccatcattaagagcaccagcaactaccacaccaaggttgacgttgagatcaaggaagagcatgtcaaggccggaaaagaaagggccgctggtttgttcaagataattgagagccaccttctcgccaaccctgatgcctccaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

167

Amino Acids

18.15

Weight (kDa)

5.02

Isoelectric Point (pI)

17.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 12 - 162 2.5e-19 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AciI CCGC 1 cut(s) 444
AfaI GTAC 2 cut(s) 266, 272
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 5 cut(s) 68, 158, 184, 284, 457
AluBI AGCT 2 cut(s) 16, 219
AluI AGCT 2 cut(s) 16, 219
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 2 cut(s) 118, 320
AoxI GGCC 3 cut(s) 84, 426, 441
ApeKI GCWGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 441
AsuNHI GCTAGC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 53
BccI CCATC 4 cut(s) 158, 233, 344, 368
BcoDI GTCTC 2 cut(s) 118, 320
BfaI CTAG 1 cut(s) 17
BglII AGATCT 1 cut(s) 315
BisI GCNGC 2 cut(s) 42, 444
BlsI GCNGC 2 cut(s) 43, 445
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 2 cut(s) 178, 358
BmsI GCATC 4 cut(s) 88, 280, 350, 481
BmtI GCTAGC 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpuEI CTTGAG 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 196, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 391
BseDI CCNNGG 2 cut(s) 196, 390
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 3 cut(s) 86, 428, 443
BsiHKAI GWGCWC 1 cut(s) 374
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 2 cut(s) 118, 320
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 3 cut(s) 86, 428, 443
Bsp1286I GDGCHC 1 cut(s) 374
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 4 cut(s) 60, 189, 315, 405
BspACI CCGC 1 cut(s) 444
BspANI GGCC 3 cut(s) 86, 428, 443
BspLI GGNNCC 2 cut(s) 178, 358
BspOI GCTAGC 1 cut(s) 20
BspQI GCTCTTC 1 cut(s) 408
BsrGI TGTACA 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 196, 390
BssMI GATC 4 cut(s) 60, 189, 315, 405
BssT1I CCWWGG 1 cut(s) 390
Bst6I CTCTTC 1 cut(s) 408
BstAUI TGTACA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 4 cut(s) 63, 192, 318, 408
BstMAI GTCTC 2 cut(s) 118, 320
BstMBI GATC 4 cut(s) 60, 189, 315, 405
BstMWI GCNNNNNNNGC 2 cut(s) 22, 131
BstNSI RCATGY 2 cut(s) 58, 422
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 315
BstXI CCANNNNNNTGG 1 cut(s) 239
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 3 cut(s) 86, 428, 443
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 441
Csp6I GTAC 2 cut(s) 265, 271
CviAII CATG 4 cut(s) 22, 55, 277, 419
CviJI RGCY 9 cut(s) 16, 20, 44, 86, 219, 357, 428, 443, 471
CviKI_1 RGCY 9 cut(s) 16, 20, 44, 86, 219, 357, 428, 443, 471
CviQI GTAC 2 cut(s) 265, 271
DdeI CTNAG 1 cut(s) 330
DpnI GATC 4 cut(s) 62, 191, 317, 407
DpnII GATC 4 cut(s) 60, 189, 315, 405
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 390
Eco147I AGGCCT 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 4 cut(s) 25, 58, 280, 422
FaiI YATR 6 cut(s) 23, 56, 222, 278, 324, 420
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 21, 54, 276, 418
Fnu4HI GCNGC 2 cut(s) 42, 444
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 42, 444
FspBI CTAG 1 cut(s) 17
GluI GCNGC 2 cut(s) 42, 444
HaeIII GGCC 3 cut(s) 86, 428, 443
HapII CCGG 1 cut(s) 429
Hin1II CATG 4 cut(s) 25, 58, 280, 422
HincII GTYRAC 2 cut(s) 52, 397
HindII GTYRAC 2 cut(s) 52, 397
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 429
Hpy166II GTNNAC 3 cut(s) 52, 265, 397
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 3 cut(s) 155, 184, 457
Hpy8I GTNNAC 3 cut(s) 52, 265, 397
HpyAV CCTTC 5 cut(s) 152, 190, 197, 278, 485
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 131
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 4 cut(s) 25, 58, 280, 422
Kzo9I GATC 4 cut(s) 60, 189, 315, 405
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 2 cut(s) 13, 362
LpnPI CCDG 6 cut(s) 108, 245, 253, 388, 432, 442
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 4 cut(s) 88, 280, 350, 481
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 399
MalI GATC 4 cut(s) 62, 191, 317, 407
MboI GATC 4 cut(s) 60, 189, 315, 405
MboII GAAGA 4 cut(s) 199, 325, 336, 425
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 3 cut(s) 243, 306, 462
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 3 cut(s) 161, 206, 347
MseI TTAA 3 cut(s) 29, 138, 366
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 22, 131
NdeII GATC 4 cut(s) 60, 189, 315, 405
NheI GCTAGC 1 cut(s) 16
NlaIII CATG 4 cut(s) 25, 58, 280, 422
NlaIV GGNNCC 2 cut(s) 178, 358
NmeAIII GCCGAG 2 cut(s) 172, 177
NspI RCATGY 2 cut(s) 58, 422
PceI AGGCCT 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 43, 445
PspN4I GGNNCC 2 cut(s) 178, 358
PspPI GGNCC 1 cut(s) 441
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 2 cut(s) 266, 272
RsaNI GTAC 2 cut(s) 265, 271
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 3 cut(s) 29, 138, 366
SatI GCNGC 2 cut(s) 42, 444
Sau3AI GATC 4 cut(s) 60, 189, 315, 405
Sau96I GGNCC 1 cut(s) 441
SduI GDGCHC 1 cut(s) 374
SetI ASST 9 cut(s) 18, 172, 182, 198, 221, 272, 396, 402, 477
SfaNI GCATC 4 cut(s) 88, 280, 350, 481
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 3 cut(s) 243, 306, 462
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 1 cut(s) 444
SspMI CTAG 1 cut(s) 17
StuI AGGCCT 1 cut(s) 86
StyI CCWWGG 1 cut(s) 390
TaiI ACGT 1 cut(s) 402
TaqI TCGA 1 cut(s) 72
TasI AATT 3 cut(s) 243, 306, 462
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 3 cut(s) 29, 138, 366
Tru9I TTAA 3 cut(s) 29, 138, 366
TseI GCWGC 1 cut(s) 41
XceI RCATGY 2 cut(s) 58, 422
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.