Rmu_sc0002263.1_g000036

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002263.1
N/A
Physical Location & Seq
Reverse (-)
159810 .. 161823
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002263.1_g000036.1.cds

Sequence Viewer

Length: 546 bp
atgccgacggaggtctggaaaacgaggatgcagggggttaggttgcccattgctgaagaggacgagggtgaggaagaagaggaccatgaggaagaaaaagggtttcgccggagatcaagaaaggaaatgggctcgatgggcgcggcgatggtgttggttgaactgatcgactggtgtggtctggtgttggttgcgtccgcactaaatcagagaggaattcacacctttatggatgacccaaagcttgagagaggaaaatccattaggcctgaatttttagctgcgattgaggagtctagatgtgcggttgtcattctctcacccagatatgcttcttcgtcatggtgcttggatgaactcgtcaagatcattcaatgcatgaaagatatggaccaacaagtcttccccgtcttctactacggcgtggatccttctgatgtgcggcaccaaaggggaagttttgagctcaaaaggaaaacccaagtagatgtggaagtaagggaacatgaagaagtttatggcaagaatgatgcggagctgctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

181

Amino Acids

20.91

Weight (kDa)

4.94

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 444
AccII CGCG 1 cut(s) 143
AciI CCGC 5 cut(s) 143, 198, 305, 442, 533
AclWI GGATC 2 cut(s) 422, 435
AcsI RAATTY 2 cut(s) 216, 272
AcuI CTGAAG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 161, 374
AluBI AGCT 4 cut(s) 244, 281, 466, 538
AluI AGCT 4 cut(s) 244, 281, 466, 538
Alw21I GWGCWC 1 cut(s) 468
AlwI GGATC 2 cut(s) 422, 435
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 2 cut(s) 281, 538
ApoI RAATTY 2 cut(s) 216, 272
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 82, 391
AsuHPI GGTGA 2 cut(s) 80, 312
AvaII GGWCC 2 cut(s) 82, 391
BamHI GGATCC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 444
BanII GRGCYC 2 cut(s) 134, 468
BbsI GAAGAC 2 cut(s) 394, 403
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 268, 525
BccI CCATC 2 cut(s) 130, 142
BceAI ACGGC 1 cut(s) 436
BfaI CTAG 1 cut(s) 297
BisI GCNGC 4 cut(s) 144, 282, 443, 539
BlsI GCNGC 4 cut(s) 145, 283, 444, 540
Bme18I GGWCC 2 cut(s) 82, 391
BmgT120I GGNCC 2 cut(s) 82, 391
BmiI GGNNCC 2 cut(s) 429, 446
BmsI GCATC 2 cut(s) 18, 520
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 2 cut(s) 394, 403
BpuEI CTTGAG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 48
BseGI GGATG 3 cut(s) 33, 238, 358
BseMI GCAATG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 268, 525
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 444
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 1 cut(s) 109
BsnI GGCC 1 cut(s) 268
Bsp1286I GDGCHC 2 cut(s) 134, 468
Bsp143I GATC 4 cut(s) 113, 165, 366, 427
BspACI CCGC 5 cut(s) 143, 198, 305, 442, 533
BspANI GGCC 1 cut(s) 268
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 429, 446
BspPI GGATC 2 cut(s) 422, 435
BspT107I GGYRCC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 176
BssMI GATC 4 cut(s) 113, 165, 366, 427
Bst6I CTCTTC 2 cut(s) 51, 72
BstF5I GGATG 3 cut(s) 33, 238, 358
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 4 cut(s) 116, 168, 369, 430
BstMBI GATC 4 cut(s) 113, 165, 366, 427
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstPAI GACNNNNGTC 1 cut(s) 11
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 268, 525
BstV2I GAAGAC 2 cut(s) 394, 403
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 3 cut(s) 33, 238, 358
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 82, 391
CseI GACGC 1 cut(s) 183
CviAII CATG 4 cut(s) 86, 342, 379, 506
CviJI RGCY 6 cut(s) 132, 244, 268, 281, 466, 538
CviKI_1 RGCY 6 cut(s) 132, 244, 268, 281, 466, 538
DpnI GATC 4 cut(s) 115, 167, 368, 429
DpnII GATC 4 cut(s) 113, 165, 366, 427
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
Eam1104I CTCTTC 2 cut(s) 51, 72
EarI CTCTTC 2 cut(s) 51, 72
Ecl136II GAGCTC 1 cut(s) 466
Eco147I AGGCCT 1 cut(s) 268
Eco24I GRGCYC 2 cut(s) 134, 468
Eco47I GGWCC 2 cut(s) 82, 391
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 380
EcoT38I GRGCYC 2 cut(s) 134, 468
FaeI CATG 4 cut(s) 89, 345, 382, 509
FaiI YATR 8 cut(s) 87, 230, 330, 343, 380, 389, 507, 519
FatI CATG 4 cut(s) 85, 341, 378, 505
Fnu4HI GCNGC 4 cut(s) 144, 282, 443, 539
FokI GGATG 3 cut(s) 40, 245, 365
FriOI GRGCYC 2 cut(s) 134, 468
Fsp4HI GCNGC 4 cut(s) 144, 282, 443, 539
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 142
GluI GCNGC 4 cut(s) 144, 282, 443, 539
HaeIII GGCC 1 cut(s) 268
HapII CCGG 1 cut(s) 109
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 143
Hin1II CATG 4 cut(s) 89, 345, 382, 509
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 1 cut(s) 293
HpaII CCGG 1 cut(s) 109
HphI GGTGA 2 cut(s) 80, 312
Hpy188I TCNGA 2 cut(s) 210, 436
Hpy188III TCNNGA 4 cut(s) 16, 117, 297, 364
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 441
HpyCH4V TGCA 2 cut(s) 31, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
Hsp92II CATG 4 cut(s) 89, 345, 382, 509
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 4 cut(s) 113, 165, 366, 427
LmnI GCTCC 1 cut(s) 535
LpnPI CCDG 6 cut(s) 17, 122, 157, 167, 282, 337
Lsp1109I GCAGC 2 cut(s) 268, 525
LweI GCATC 2 cut(s) 18, 520
MaeI CTAG 1 cut(s) 297
MalI GATC 4 cut(s) 115, 167, 368, 429
MboI GATC 4 cut(s) 113, 165, 366, 427
MboII GAAGA 8 cut(s) 68, 86, 89, 104, 327, 394, 403, 521
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 2 cut(s) 134, 468
MluCI AATT 2 cut(s) 216, 272
MlyI GAGTC 1 cut(s) 302
Mph1103I ATGCAT 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 138
NdeII GATC 4 cut(s) 113, 165, 366, 427
NlaIII CATG 4 cut(s) 89, 345, 382, 509
NlaIV GGNNCC 2 cut(s) 429, 446
NsiI ATGCAT 1 cut(s) 380
PceI AGGCCT 1 cut(s) 268
PkrI GCNGC 4 cut(s) 145, 283, 444, 540
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PshAI GACNNNNGTC 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 429, 446
PspPI GGNCC 2 cut(s) 82, 391
PsuI RGATCY 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 468
SatI GCNGC 4 cut(s) 144, 282, 443, 539
Sau3AI GATC 4 cut(s) 113, 165, 366, 427
Sau96I GGNCC 2 cut(s) 82, 391
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 2 cut(s) 134, 468
SetI ASST 7 cut(s) 15, 44, 227, 246, 283, 468, 540
SfaNI GCATC 2 cut(s) 18, 520
SinI GGWCC 2 cut(s) 82, 391
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 216, 272
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 5 cut(s) 143, 198, 305, 442, 533
SspMI CTAG 1 cut(s) 297
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 1 cut(s) 268
TaqI TCGA 2 cut(s) 134, 168
TasI AATT 2 cut(s) 216, 272
TauI GCSGC 2 cut(s) 146, 445
TseI GCWGC 2 cut(s) 281, 538
TspDTI ATGAA 3 cut(s) 369, 395, 522
TspGWI ACGGA 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 82, 391
XapI RAATTY 2 cut(s) 216, 272
XbaI TCTAGA 1 cut(s) 296
XspI CTAG 1 cut(s) 297
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.