Rmu_sc0002266.1_g000016

Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002266.1
N/A
Physical Location & Seq
Reverse (-)
93984 .. 94853
870 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
atggtcatacatgcagttatcagggtagggcgtccacaaggtgtcattgaaaggagatccttttacaatgacttccagtatatagttggaggttattcttattcccttagtaacatcgaaaatggcatccttagaaacaacaggagacctccttattccctagtcaagccatttggcactggagacagccgcatagagcttgcttgtgctaaagtgaatccaataatccactttggactgtgcaatgggacaaggtcaagcccgacagtaaggttcttctcaccccaagtaatcgaagctgaattaagatctgcagcaagggagttctttaagagtggtggaatggaggtgaacttggagaagaggaccgtgtatctcacccaaatcatcaaatggttcaataatgattttggacaagataaagacattttagagtggatcctgaattacttggacccaactagagcaggtcttttgacacatctgttgggtgatggaggacctatacatatttcttaccagaactatgattggtccatgaactcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEP DUF547 Glutaredoxin

Protein Analysis

182

Amino Acids

20.77

Weight (kDa)

8.9

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF547 PF04784 1 - 109 3.2e-26 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 458
AciI CCGC 1 cut(s) 190
AclWI GGATC 3 cut(s) 51, 433, 446
AcyI GRCGYC 1 cut(s) 31
AdeI CACNNNGTG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 50, 400
AluBI AGCT 2 cut(s) 199, 299
AluI AGCT 2 cut(s) 199, 299
Alw26I GTCTC 2 cut(s) 139, 177
AlwI GGATC 3 cut(s) 51, 433, 446
ApeKI GCWGC 1 cut(s) 314
AspS9I GGNCC 4 cut(s) 366, 454, 500, 534
AsuHPI GGTGA 4 cut(s) 273, 361, 370, 503
AvaII GGWCC 4 cut(s) 366, 454, 500, 534
BamHI GGATCC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 139, 177
BfaI CTAG 2 cut(s) 161, 462
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 458
BglII AGATCT 1 cut(s) 308
BisI GCNGC 2 cut(s) 190, 315
BlsI GCNGC 2 cut(s) 191, 316
Bme18I GGWCC 4 cut(s) 366, 454, 500, 534
BmgT120I GGNCC 4 cut(s) 366, 454, 500, 534
BmiI GGNNCC 2 cut(s) 440, 456
BmsI GCATC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 76, 184
Bse3DI GCAATG 1 cut(s) 250
BseGI GGATG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 250
BseNI ACTGG 2 cut(s) 76, 184
BseXI GCAGC 1 cut(s) 326
BslFI GGGAC 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 139, 177
BsmFI GGGAC 1 cut(s) 262
Bso31I GGTCTC 1 cut(s) 139
Bsp143I GATC 3 cut(s) 56, 308, 438
BspACI CCGC 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 440, 456
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 3 cut(s) 51, 433, 446
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 2 cut(s) 76, 184
BssMI GATC 3 cut(s) 56, 308, 438
BssNI GRCGYC 1 cut(s) 31
Bst4CI ACNGT 3 cut(s) 240, 268, 370
Bst6I CTCTTC 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 107, 131
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 3 cut(s) 59, 311, 441
BstMAI GTCTC 2 cut(s) 139, 177
BstMBI GATC 3 cut(s) 56, 308, 438
BstNSI RCATGY 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 326
BstX2I RGATCY 3 cut(s) 56, 308, 438
BstYI RGATCY 3 cut(s) 56, 308, 438
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 201
Cfr13I GGNCC 4 cut(s) 366, 454, 500, 534
CseI GACGC 1 cut(s) 20
CviAII CATG 2 cut(s) 11, 538
CviJI RGCY 5 cut(s) 169, 189, 199, 261, 299
CviKI_1 RGCY 5 cut(s) 169, 189, 199, 261, 299
DdeI CTNAG 2 cut(s) 107, 131
DpnI GATC 3 cut(s) 58, 310, 440
DpnII GATC 3 cut(s) 56, 308, 438
DraIII CACNNNGTG 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 4 cut(s) 366, 454, 500, 534
EcoO109I RGGNCCY 1 cut(s) 500
FaeI CATG 2 cut(s) 14, 541
FaiI YATR 9 cut(s) 8, 12, 81, 83, 194, 506, 510, 528, 539
FaqI GGGAC 1 cut(s) 262
FatI CATG 2 cut(s) 10, 537
Fnu4HI GCNGC 2 cut(s) 190, 315
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 190, 315
FspBI CTAG 2 cut(s) 161, 462
GluI GCNGC 2 cut(s) 190, 315
GsuI CTGGAG 1 cut(s) 201
HgaI GACGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 2 cut(s) 14, 541
HinfI GANTC 1 cut(s) 217
HphI GGTGA 4 cut(s) 273, 361, 370, 503
Hpy166II GTNNAC 2 cut(s) 35, 352
Hpy188III TCNNGA 2 cut(s) 442, 546
Hpy8I GTNNAC 2 cut(s) 35, 352
HpyCH4III ACNGT 3 cut(s) 240, 268, 370
HpyCH4V TGCA 3 cut(s) 14, 243, 314
HpyF3I CTNAG 2 cut(s) 107, 131
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 2 cut(s) 14, 541
Kzo9I GATC 3 cut(s) 56, 308, 438
LpnPI CCDG 7 cut(s) 7, 89, 127, 165, 453, 455, 533
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 161, 462
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 58, 310, 440
MboI GATC 3 cut(s) 56, 308, 438
MboII GAAGA 2 cut(s) 268, 373
MflI RGATCY 3 cut(s) 56, 308, 438
MluCI AATT 2 cut(s) 302, 445
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 5 cut(s) 83, 159, 340, 357, 491
MseI TTAA 2 cut(s) 305, 330
NdeII GATC 3 cut(s) 56, 308, 438
NlaIII CATG 2 cut(s) 14, 541
NlaIV GGNNCC 2 cut(s) 440, 456
NspI RCATGY 1 cut(s) 14
PfeI GAWTC 1 cut(s) 217
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 191, 316
PpuMI RGGWCCY 1 cut(s) 500
Psp5II RGGWCCY 1 cut(s) 500
PspN4I GGNNCC 2 cut(s) 440, 456
PspPI GGNCC 4 cut(s) 366, 454, 500, 534
PspPPI RGGWCCY 1 cut(s) 500
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 3 cut(s) 56, 308, 438
PsyI GACNNNGTC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 305, 330
SatI GCNGC 2 cut(s) 190, 315
Sau3AI GATC 3 cut(s) 56, 308, 438
Sau96I GGNCC 4 cut(s) 366, 454, 500, 534
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 4 cut(s) 366, 454, 500, 534
Sse9I AATT 2 cut(s) 302, 445
SsiI CCGC 1 cut(s) 190
SspMI CTAG 2 cut(s) 161, 462
TaaI ACNGT 3 cut(s) 240, 268, 370
TaqI TCGA 2 cut(s) 117, 294
TasI AATT 2 cut(s) 302, 445
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 305, 330
Tru9I TTAA 2 cut(s) 305, 330
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 314
TspRI CASTG 1 cut(s) 184
Tth111I GACNNNGTC 1 cut(s) 253
VpaK11BI GGWCC 4 cut(s) 366, 454, 500, 534
XceI RCATGY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XspI CTAG 2 cut(s) 161, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.