Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002268.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

45262 .. 47376

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgtttctgttcgactggttctacggcgtgctcgcttccctcggtctgtggcagaaggaggccaagatcttgttcctagggctcgataatgccggcaagaccaccttgcttcacatgctcaaagatgaggtagatgctgtggtgtaccttgtggatgcctttgacaaggagaggtttgctgaatcaaagaaggaactagatgcgctcctttctgatgaagcccttgccagtgtcccatttctaattctggggaacaagatcgacataccatatgctgcttcagaagatgagttgcgataccaccttggactgtccaacttcaccacaggcaaggggaaggtaaacctagccgactcaaatgtccgtccgttagaagtcttcatgtgcagcattgtacgtaaaatgggctatggcgatggttttaagtggctctctcaatacattaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

149

Amino Acids

16.82

Weight (kDa)

5.18

Isoelectric Point (pI)

21.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 43	2.7e-10	ADP-ribosylation factor family
Arf	PF00025	43 - 148	1.3e-26	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	146, 396
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
Alw21I	GWGCWC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	275, 387
AspA2I	CCTAGG	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	313
AvrII	CCTAGG	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	262, 399
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	40
BfaI	CTAG	3 cut(s)	77, 197, 347
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	2 cut(s)	276, 388
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	2 cut(s)	277, 389
BmsI	GCATC	3 cut(s)	124, 145, 190
BpiI	GAAGAC	1 cut(s)	370
BsaAI	YACGTR	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	40, 76, 304
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	20, 228
BseDI	CCNNGG	3 cut(s)	40, 76, 304
BseGI	GGATG	1 cut(s)	160
BseNI	ACTGG	2 cut(s)	20, 228
BseXI	GCAGC	2 cut(s)	262, 399
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	33, 84
Bsp143I	GATC	2 cut(s)	66, 258
BspANI	GGCC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	20, 228
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	40, 76, 304
BssMI	GATC	2 cut(s)	66, 258
BssT1I	CCWWGG	2 cut(s)	76, 304
Bst4CI	ACNGT	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	29, 33, 94
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	69, 261
BstMBI	GATC	2 cut(s)	66, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	118
BstSNI	TACGTA	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	262, 399
BstV2I	GAAGAC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	3 cut(s)	29, 33, 94
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	145, 395
CviAII	CATG	2 cut(s)	115, 382
CviJI	RGCY	6 cut(s)	62, 82, 221, 350, 408, 430
CviKI_1	RGCY	6 cut(s)	62, 82, 221, 350, 408, 430
CviQI	GTAC	2 cut(s)	145, 395
DpnI	GATC	2 cut(s)	68, 260
DpnII	GATC	2 cut(s)	66, 258
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
Eco105I	TACGTA	1 cut(s)	398
Eco130I	CCWWGG	2 cut(s)	76, 304
Eco24I	GRGCYC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	264
EcoT14I	CCWWGG	2 cut(s)	76, 304
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	76, 304
FaeI	CATG	2 cut(s)	118, 385
FaiI	YATR	6 cut(s)	116, 266, 271, 273, 383, 411
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	114, 381
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	276, 388
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	276, 388
FspBI	CTAG	3 cut(s)	77, 197, 347
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	276, 388
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	118, 385
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	182, 353
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	145, 343
Hpy188I	TCNGA	2 cut(s)	214, 283
Hpy8I	GTNNAC	2 cut(s)	145, 343
HpyAV	CCTTC	3 cut(s)	49, 184, 331
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	118, 385
HspAI	GCGC	1 cut(s)	203
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	66, 258
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	4 cut(s)	106, 233, 241, 312
Lsp1109I	GCAGC	2 cut(s)	262, 399
LweI	GCATC	3 cut(s)	124, 145, 190
MaeI	CTAG	3 cut(s)	77, 197, 347
MaeII	ACGT	1 cut(s)	397
MalI	GATC	2 cut(s)	68, 260
MboI	GATC	2 cut(s)	66, 258
MboII	GAAGA	2 cut(s)	296, 370
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	33, 84
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	4 cut(s)	50, 52, 121, 165
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	2 cut(s)	423, 444
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	115
NaeI	GCCGGC	1 cut(s)	94
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	2 cut(s)	66, 258
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	118, 385
NspI	RCATGY	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	277, 389
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	2 cut(s)	146, 396
RsaNI	GTAC	2 cut(s)	145, 395
SaqAI	TTAA	2 cut(s)	423, 444
SatI	GCNGC	2 cut(s)	276, 388
Sau3AI	GATC	2 cut(s)	66, 258
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	33, 84
SetI	ASST	8 cut(s)	107, 132, 150, 176, 306, 342, 348, 400
SfaNI	GCATC	3 cut(s)	124, 145, 190
SnaBI	TACGTA	1 cut(s)	398
Sse9I	AATT	1 cut(s)	243
SspMI	CTAG	3 cut(s)	77, 197, 347
StyI	CCWWGG	2 cut(s)	76, 304
TaaI	ACNGT	1 cut(s)	312
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	3 cut(s)	12, 84, 261
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	423, 444
Tru9I	TTAA	2 cut(s)	423, 444
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	275, 387
TspDTI	ATGAA	2 cut(s)	231, 370
TspGWI	ACGGA	2 cut(s)	353, 357
TspRI	CASTG	1 cut(s)	235
XceI	RCATGY	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	3 cut(s)	77, 197, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.