Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002270.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

89131 .. 89634

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgtggagggagagagttctgataagagggctaaggccggtgaatcgtggagatggtagagagctcaataagtttgagggtgtcagtgttaagcaagatgatgagggaccaattaaggctgatgaagaaattcctgaagaaagtgacaacattgaaagaaagataatgcaactaaaagttgaggttcatgcattggagaaagagaaggacaaaggtagcagagcttgtcgtgttgaagtgagaaaagagctggatgacttgagagaaactgtagccatcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0034605 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043335 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

94

Amino Acids

10.95

Weight (kDa)

5.57

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	155, 236
AluBI	AGCT	3 cut(s)	64, 224, 250
AluI	AGCT	3 cut(s)	64, 224, 250
Alw21I	GWGCWC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	2 cut(s)	47, 284
BfmI	CTRYAG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	37
BseGI	GGATG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	107
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	7 cut(s)	31, 37, 64, 119, 224, 250, 275
CviKI_1	RGCY	7 cut(s)	31, 37, 64, 119, 224, 250, 275
DdeI	CTNAG	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	1 cut(s)	191
FaiI	YATR	1 cut(s)	189
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	1 cut(s)	187
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	169, 191
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	191
LpnPI	CCDG	3 cut(s)	51, 147, 236
MaeIII	GTNAC	1 cut(s)	143
MboII	GAAGA	2 cut(s)	137, 149
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	2 cut(s)	111, 129
MnlI	CCTC	4 cut(s)	20, 70, 97, 175
Mph1103I	ATGCAT	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	2 cut(s)	90, 114
MspI	CCGG	1 cut(s)	38
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	143
NsiI	ATGCAT	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	90, 114
Sau96I	GGNCC	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	5 cut(s)	66, 186, 217, 226, 252
SfcI	CTRYAG	1 cut(s)	270
SgeI	CNNG	9 cut(s)	50, 59, 107, 146, 200, 237, 242, 263, 271
SinI	GGWCC	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	2 cut(s)	111, 129
SstI	GAGCTC	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	2 cut(s)	111, 129
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	90, 114
Tru9I	TTAA	2 cut(s)	90, 114
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	138, 176
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.