Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002279.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10876 .. 13088

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggtggagaagggtcgtttgcctggtcttgatgctatattggagggtgtggctatacaagttcttgctatggctgaattggccgaatcttttactaggaagagactgcgcaaccgttgggttggaacttggaagtgtctattccctcctcctcctcctcctcctattagggttcttacctctctctccgcccctctcgcggcaactactttaaaagccctaatggcttcggagaagaagttagcgaaccctatgagggaaatcaaggtccagaagctggtcctcaacatctctgtaggcgagagcggtgatcggctcaccagagccgcgaaggtgttggagcaactcagtggccaaacccctgttttttccaaagcaaggtacactgttcggagctttggcatcaggcgtaatgagaagattgcctgctacgtcactgtcaggggtgaaaaggccatgtcacttctggagagtgggttgaaggtcaaggaatacgagttgctccgaaagaactttagtgatactggttgctttggctttggtatccaggagcacatcgatctgggaatcaagtatgatccttctactggtatatatggaatggatttctatgttgttttggagcgcccgggttatcgtgtgggtcgtcgtcgtagatgcaagtctcgtgttgggatccagcacagggtcacgaaggaggattccatgaaatggttccaggtcaaatatgagggtgtgatccttaacaagtcccagcaaatctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

255

Amino Acids

28.78

Weight (kDa)

10.04

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	83 - 136	3.5e-21	Ribosomal protein L5
Ribosomal_L5_C	PF00673	140 - 238	2.9e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	110
AccB7I	CCANNNNNTGG	2 cut(s)	277, 711
AccBSI	CCGCTC	1 cut(s)	306
AccII	CGCG	2 cut(s)	200, 329
AciI	CCGC	4 cut(s)	189, 200, 306, 327
AclWI	GGATC	4 cut(s)	572, 670, 683, 733
AcoI	YGGCCR	2 cut(s)	81, 352
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	7 cut(s)	199, 256, 277, 378, 587, 685, 711
AgsI	TTSAA	1 cut(s)	481
AjnI	CCWGG	3 cut(s)	22, 546, 717
AluBI	AGCT	2 cut(s)	277, 396
AluI	AGCT	2 cut(s)	277, 396
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	2 cut(s)	97, 669
AlwI	GGATC	4 cut(s)	572, 670, 683, 733
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	3 cut(s)	81, 352, 453
Asp700I	GAANNNNTTC	1 cut(s)	713
AspLEI	GCGC	2 cut(s)	111, 627
AspS9I	GGNCC	2 cut(s)	268, 280
AsuC2I	CCSGG	2 cut(s)	629, 630
AsuHPI	GGTGA	3 cut(s)	310, 320, 458
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	268, 280
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	675
BauI	CACGAG	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	555
BciT130I	CCWGG	3 cut(s)	24, 548, 719
BciVI	GTATCC	1 cut(s)	554
BcnI	CCSGG	2 cut(s)	629, 630
BcoDI	GTCTC	2 cut(s)	97, 669
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	628
BfuI	GTATCC	1 cut(s)	554
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	201, 327
BlsI	GCNGC	2 cut(s)	202, 328
Bme1390I	CCNGG	5 cut(s)	24, 548, 629, 630, 719
Bme18I	GGWCC	2 cut(s)	268, 280
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	268, 280
BmiI	GGNNCC	2 cut(s)	677, 716
BmrFI	CCNGG	5 cut(s)	24, 548, 629, 630, 719
BmsI	GCATC	3 cut(s)	22, 411, 647
BpmI	CTGGAG	1 cut(s)	488
BpuMI	CCSGG	2 cut(s)	629, 630
Bsa29I	ATCGAT	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	628
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 461, 491
Bsc4I	CCNNNNNNNGG	7 cut(s)	199, 256, 277, 378, 587, 685, 711
Bse1I	ACTGG	2 cut(s)	529, 592
BseBI	CCWGG	3 cut(s)	24, 548, 719
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	628
BseLI	CCNNNNNNNGG	7 cut(s)	199, 256, 277, 378, 587, 685, 711
BseMII	CTCAG	1 cut(s)	361
BseNI	ACTGG	2 cut(s)	529, 592
BseRI	GAGGAG	5 cut(s)	138, 141, 144, 147, 150
BseYI	CCCAGC	1 cut(s)	753
Bsh1236I	CGCG	2 cut(s)	200, 329
BshFI	GGCC	3 cut(s)	83, 354, 455
BshVI	ATCGAT	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	7 cut(s)	199, 256, 277, 378, 587, 685, 711
BsmAI	GTCTC	2 cut(s)	97, 669
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	3 cut(s)	83, 354, 455
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	5 cut(s)	310, 559, 577, 675, 738
BspACI	CCGC	4 cut(s)	189, 200, 306, 327
BspANI	GGCC	3 cut(s)	83, 354, 455
BspCNI	CTCAG	1 cut(s)	360
BspDI	ATCGAT	1 cut(s)	558
BspFNI	CGCG	2 cut(s)	200, 329
BspLI	GGNNCC	2 cut(s)	677, 716
BspPI	GGATC	4 cut(s)	572, 670, 683, 733
BsrBI	CCGCTC	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	529, 592
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	5 cut(s)	310, 559, 577, 675, 738
BssSI	CACGAG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	3 cut(s)	24, 548, 719
Bst4CI	ACNGT	3 cut(s)	116, 388, 439
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	2 cut(s)	347, 765
BstFNI	CGCG	2 cut(s)	200, 329
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	2 cut(s)	111, 627
BstKTI	GATC	5 cut(s)	313, 562, 580, 678, 741
BstMAI	GTCTC	2 cut(s)	97, 669
BstMBI	GATC	5 cut(s)	310, 559, 577, 675, 738
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 197, 224
BstNI	CCWGG	3 cut(s)	24, 548, 719
BstSCI	CCNGG	5 cut(s)	22, 546, 627, 628, 717
BstSFI	CTRYAG	1 cut(s)	294
BstUI	CGCG	2 cut(s)	200, 329
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
Bsu15I	ATCGAT	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	83, 354, 455
BsuTUI	ATCGAT	1 cut(s)	558
BtsIMutI	CAGTG	3 cut(s)	355, 384, 435
Cac8I	GCNNGC	1 cut(s)	427
CaiI	CAGNNNCTG	1 cut(s)	277
CfoI	GCGC	2 cut(s)	111, 627
Cfr13I	GGNCC	2 cut(s)	268, 280
Cfr9I	CCCGGG	1 cut(s)	628
ClaI	ATCGAT	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	2 cut(s)	457, 706
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	347, 765
DpnI	GATC	5 cut(s)	312, 561, 579, 677, 740
DpnII	GATC	5 cut(s)	310, 559, 577, 675, 738
DraI	TTTAAA	1 cut(s)	213
EaeI	YGGCCR	2 cut(s)	81, 352
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	268, 280
Eco88I	CYCGRG	1 cut(s)	628
EcoRII	CCWGG	3 cut(s)	22, 546, 717
FaeI	CATG	2 cut(s)	460, 709
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	2 cut(s)	456, 705
Fnu4HI	GCNGC	2 cut(s)	201, 327
Fsp4HI	GCNGC	2 cut(s)	201, 327
FspBI	CTAG	1 cut(s)	96
FspI	TGCGCA	1 cut(s)	110
GlaI	GCGC	2 cut(s)	110, 626
GluI	GCNGC	2 cut(s)	201, 327
GsaI	CCCAGC	1 cut(s)	757
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	3 cut(s)	83, 354, 455
HapII	CCGG	1 cut(s)	629
HhaI	GCGC	2 cut(s)	111, 627
Hin1II	CATG	2 cut(s)	460, 709
Hin6I	GCGC	2 cut(s)	109, 625
HinP1I	GCGC	2 cut(s)	109, 625
HinfI	GANTC	3 cut(s)	86, 567, 701
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	3 cut(s)	310, 320, 458
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	3 cut(s)	232, 393, 506
Hpy188III	TCNNGA	4 cut(s)	29, 271, 467, 691
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	2 cut(s)	651, 654
HpyAV	CCTTC	5 cut(s)	4, 325, 475, 591, 688
HpyCH4III	ACNGT	3 cut(s)	116, 388, 439
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	1 cut(s)	660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 197, 224
HpyF3I	CTNAG	2 cut(s)	347, 765
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	460, 709
HspAI	GCGC	2 cut(s)	109, 625
Kzo9I	GATC	5 cut(s)	310, 559, 577, 675, 738
LmnI	GCTCC	5 cut(s)	340, 393, 507, 550, 622
LweI	GCATC	3 cut(s)	22, 411, 647
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	433, 459, 688
MalI	GATC	5 cut(s)	312, 561, 579, 677, 740
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	5 cut(s)	310, 559, 577, 675, 738
MboII	GAAGA	3 cut(s)	112, 247, 430
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	2 cut(s)	103, 318
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	2 cut(s)	212, 744
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	5 cut(s)	24, 548, 629, 630, 719
MvaI	CCWGG	3 cut(s)	24, 548, 719
MvnI	CGCG	2 cut(s)	200, 329
MwoI	GCNNNNNNNGC	3 cut(s)	80, 197, 224
NciI	CCSGG	2 cut(s)	629, 630
NdeII	GATC	5 cut(s)	310, 559, 577, 675, 738
NlaIII	CATG	2 cut(s)	460, 709
NlaIV	GGNNCC	2 cut(s)	677, 716
NmuCI	GTSAC	3 cut(s)	433, 459, 688
NsbI	TGCGCA	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	86, 567, 701
PflMI	CCANNNNNTGG	2 cut(s)	277, 711
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	2 cut(s)	202, 328
Psp6I	CCWGG	3 cut(s)	22, 546, 717
PspFI	CCCAGC	1 cut(s)	753
PspGI	CCWGG	3 cut(s)	22, 546, 717
PspN4I	GGNNCC	2 cut(s)	677, 716
PspPI	GGNCC	2 cut(s)	268, 280
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	675
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	212, 744
SatI	GCNGC	2 cut(s)	201, 327
Sau3AI	GATC	5 cut(s)	310, 559, 577, 675, 738
Sau96I	GGNCC	2 cut(s)	268, 280
ScrFI	CCNGG	5 cut(s)	24, 548, 629, 630, 719
SduI	GDGCHC	1 cut(s)	555
SetI	ASST	9 cut(s)	182, 270, 279, 336, 383, 398, 435, 486, 723
SfaNI	GCATC	3 cut(s)	22, 411, 647
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	2 cut(s)	268, 280
SmaI	CCCGGG	1 cut(s)	630
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	189, 200, 306, 327
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	5 cut(s)	22, 546, 627, 628, 717
TaaI	ACNGT	3 cut(s)	116, 388, 439
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	558
TasI	AATT	1 cut(s)	77
TauI	GCSGC	2 cut(s)	203, 329
TfiI	GAWTC	3 cut(s)	86, 567, 701
Tru1I	TTAA	2 cut(s)	212, 744
Tru9I	TTAA	2 cut(s)	212, 744
TscAI	CASTG	3 cut(s)	355, 391, 442
TseFI	GTSAC	3 cut(s)	433, 459, 688
Tsp45I	GTSAC	3 cut(s)	433, 459, 688
TspDTI	ATGAA	1 cut(s)	722
TspMI	CCCGGG	1 cut(s)	628
TspRI	CASTG	3 cut(s)	355, 391, 442
Van91I	CCANNNNNTGG	2 cut(s)	277, 711
VpaK11BI	GGWCC	2 cut(s)	268, 280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmaI	CCCGGG	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.