Rmu_sc0002286.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002286.1
N/A
Physical Location & Seq
Reverse (-)
48810 .. 49154
345 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
atggaagctaataaggcaaaagacatcatcctaatgactcgtcacatggatgattcgctccaatacgagtatctgaataaagaagaacaagatctcaaaaagctgtgggtctcagtagaagagcgctttggcaacctccatgactcgctgcttcctgacctagaagtgagatggcataatctccgcttttgtaatttcaagtcagttcttgactacaacttggaagcaactcacatcaaatccttgatggatttttgtggtaaagagatcacagatgagatgttgattgagatgacgctctctaccttccccttctctgctttgatggttgttaagaactattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

13.57

Weight (kDa)

5.0

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 184
AfeI AGCGCT 1 cut(s) 125
AgsI TTSAA 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 2 cut(s) 8, 103
AluI AGCT 2 cut(s) 8, 103
Alw26I GTCTC 1 cut(s) 115
Aor51HI AGCGCT 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 135
BccI CCATC 3 cut(s) 165, 241, 319
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 127
BglII AGATCT 1 cut(s) 91
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 115
BseGI GGATG 2 cut(s) 27, 55
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 91, 267
BspACI CCGC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 115
BssMI GATC 2 cut(s) 91, 267
Bst6I CTCTTC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 112
BstF5I GGATG 2 cut(s) 27, 55
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 94, 270
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 91, 267
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BtsCI GGATG 2 cut(s) 27, 55
CfoI GCGC 1 cut(s) 126
CseI GACGC 1 cut(s) 304
CviAII CATG 2 cut(s) 46, 140
CviJI RGCY 2 cut(s) 8, 103
CviKI_1 RGCY 2 cut(s) 8, 103
DdeI CTNAG 1 cut(s) 112
DpnI GATC 2 cut(s) 93, 269
DpnII GATC 2 cut(s) 91, 267
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 125
FaeI CATG 2 cut(s) 49, 143
FaiI YATR 3 cut(s) 47, 141, 177
FatI CATG 2 cut(s) 45, 139
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 2 cut(s) 14, 62
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 127
HgaI GACGC 1 cut(s) 304
HhaI GCGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 49, 143
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 3 cut(s) 37, 53, 143
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 155, 209
HpyAV CCTTC 2 cut(s) 316, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 2 cut(s) 49, 143
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 91, 267
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 1 cut(s) 168
Lsp1109I GCAGC 1 cut(s) 135
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 41
MalI GATC 2 cut(s) 93, 269
MboI GATC 2 cut(s) 91, 267
MboII GAAGA 2 cut(s) 95, 131
MflI RGATCY 1 cut(s) 91
MluCI AATT 1 cut(s) 193
MlyI GAGTC 2 cut(s) 31, 137
MnlI CCTC 1 cut(s) 146
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 2 cut(s) 32, 48
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 2 cut(s) 91, 267
NlaIII CATG 2 cut(s) 49, 143
NmuCI GTSAC 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 2 cut(s) 31, 137
PpsI GAGTC 2 cut(s) 31, 137
PsuI RGATCY 1 cut(s) 91
RseI CAYNNNNRTG 2 cut(s) 32, 48
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 2 cut(s) 91, 267
SchI GAGTC 2 cut(s) 31, 137
SetI ASST 5 cut(s) 10, 105, 138, 162, 308
SmiMI CAYNNNNRTG 2 cut(s) 32, 48
Sse9I AATT 1 cut(s) 193
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 161
TasI AATT 1 cut(s) 193
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 41
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.