Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002308.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

184772 .. 185449

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002308.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgggacctgaaggatcagaaacacatgttacaacaagagtaatgggtacatatggctatgctgccccagaatacgtctctacagggcaattgacaacaaaatgtgacatatacagctttggggtggtgctactagaattgcttactggaagaagagccatggacaaatcaagaccaaagagtgagcagaatctcattgattgggcaaaaccttacctcactagtactagaaggttacgctacattatggaccccaggcttgccggacagtattctgtgaagggtgcgaaggagattgcccttctggcattacaatgcataagtttgagccctaaagacaggccaaggatgccagctattgttgaaaccctagaagccgtgcaacttttgaaggacatggctgtgacacatgggcattggccggcgtcgcccaaatccagtagaaatggggtttttggtgctaaagctagagttgatggaaataaagttgcgtatatcaggaaatcctctgcagctacaacagtaactcagaaatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

179

Amino Acids

19.68

Weight (kDa)

9.81

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	2 cut(s)	49, 226
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	365, 391
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	4 cut(s)	117, 356, 467, 515
AluI	AGCT	4 cut(s)	117, 356, 467, 515
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	2 cut(s)	341, 419
ApeKI	GCWGC	2 cut(s)	62, 512
AspS9I	GGNCC	2 cut(s)	5, 250
AvaII	GGWCC	2 cut(s)	5, 250
BanII	GRGCYC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	49, 524
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	82
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	5 cut(s)	134, 222, 228, 371, 468
BfmI	CTRYAG	2 cut(s)	81, 510
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	63, 513
BlsI	GCNGC	2 cut(s)	64, 514
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	2 cut(s)	5, 250
BmgT120I	GGNCC	2 cut(s)	5, 250
BmiI	GGNNCC	2 cut(s)	6, 252
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	159, 254, 344
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	151, 438
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	3 cut(s)	159, 254, 344
BseGI	GGATG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	151, 438
BseXI	GCAGC	2 cut(s)	49, 524
BshFI	GGCC	2 cut(s)	343, 421
BsiSI	CCGG	2 cut(s)	264, 422
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	343, 421
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	159
BspANI	GGCC	2 cut(s)	343, 421
BspLI	GGNNCC	2 cut(s)	6, 252
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	151, 438
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	3 cut(s)	159, 254, 344
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	425
BssT1I	CCWWGG	2 cut(s)	159, 344
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	270, 523
Bst6I	CTCTTC	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	261, 354, 423
BstDEI	CTNAG	1 cut(s)	528
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	354
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 349, 427
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	2 cut(s)	81, 510
BstV1I	GCAGC	2 cut(s)	49, 524
BsuRI	GGCC	2 cut(s)	343, 421
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	3 cut(s)	261, 354, 423
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	5, 250
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	2 cut(s)	48, 225
CviAII	CATG	4 cut(s)	26, 160, 397, 410
CviQI	GTAC	2 cut(s)	48, 225
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	159, 344
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	5, 250
Eco57I	CTGAAG	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	2 cut(s)	159, 344
EcoT22I	ATGCAT	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	2 cut(s)	159, 344
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	4 cut(s)	29, 163, 400, 413
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	25, 159, 396, 409
FauNDI	CATATG	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	63, 513
FokI	GGATG	1 cut(s)	361
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	63, 513
FspBI	CTAG	5 cut(s)	134, 222, 228, 371, 468
GluI	GCNGC	2 cut(s)	63, 513
HaeIII	GGCC	2 cut(s)	343, 421
HapII	CCGG	2 cut(s)	264, 422
HgaI	GACGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	4 cut(s)	29, 163, 400, 413
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	264, 422
Hpy188I	TCNGA	2 cut(s)	19, 531
Hpy188III	TCNNGA	3 cut(s)	171, 499, 537
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	6 cut(s)	5, 225, 274, 283, 311, 385
HpyCH4III	ACNGT	2 cut(s)	270, 523
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	318, 382, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 349, 427
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	4 cut(s)	29, 163, 400, 413
KroI	GCCGGC	1 cut(s)	421
KroNI	GCCGGC	1 cut(s)	423
Kzo9I	GATC	1 cut(s)	14
LguI	GCTCTTC	1 cut(s)	148
Lsp1109I	GCAGC	2 cut(s)	49, 524
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	5 cut(s)	134, 222, 228, 371, 468
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	5 cut(s)	28, 104, 234, 403, 523
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	162, 165
MfeI	CAATTG	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	2 cut(s)	89, 137
MnlI	CCTC	2 cut(s)	227, 517
Mph1103I	ATGCAT	1 cut(s)	320
MroNI	GCCGGC	1 cut(s)	421
MslI	CAYNNNNRTG	2 cut(s)	313, 401
MspI	CCGG	2 cut(s)	264, 422
MspR9I	CCNGG	1 cut(s)	256
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	305, 349, 427
NaeI	GCCGGC	1 cut(s)	423
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	1 cut(s)	14
NgoMIV	GCCGGC	1 cut(s)	421
NlaIII	CATG	4 cut(s)	29, 163, 400, 413
NlaIV	GGNNCC	2 cut(s)	6, 252
NmuCI	GTSAC	2 cut(s)	104, 403
NsiI	ATGCAT	1 cut(s)	320
NspI	RCATGY	1 cut(s)	29
PciI	ACATGT	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	64, 514
PpuMI	RGGWCCY	1 cut(s)	5
PscI	ACATGT	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	6, 252
PspPI	GGNCC	2 cut(s)	5, 250
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	514
RsaI	GTAC	2 cut(s)	49, 226
RsaNI	GTAC	2 cut(s)	48, 225
RseI	CAYNNNNRTG	2 cut(s)	313, 401
SapI	GCTCTTC	1 cut(s)	148
SatI	GCNGC	2 cut(s)	63, 513
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	2 cut(s)	5, 250
ScaI	AGTACT	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	9 cut(s)	10, 78, 119, 214, 219, 236, 358, 469, 517
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	2 cut(s)	81, 510
SinI	GGWCC	2 cut(s)	5, 250
SmiMI	CAYNNNNRTG	2 cut(s)	313, 401
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	2 cut(s)	89, 137
SspMI	CTAG	5 cut(s)	134, 222, 228, 371, 468
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	2 cut(s)	159, 344
TaaI	ACNGT	2 cut(s)	270, 523
TaiI	ACGT	1 cut(s)	78
TasI	AATT	2 cut(s)	89, 137
TatI	WGTACW	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	104, 403
TseI	GCWGC	2 cut(s)	62, 512
Tsp45I	GTSAC	2 cut(s)	104, 403
VpaK11BI	GGWCC	2 cut(s)	5, 250
XceI	RCATGY	1 cut(s)	29
XspI	CTAG	5 cut(s)	134, 222, 228, 371, 468
ZrmI	AGTACT	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.