Rmu_sc0002308.1_g000055

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002308.1
N/A
Physical Location & Seq
Forward (+)
245605 .. 250425
4821 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 873 bp
atgcaggaagtggagagtatggtaccttttgaaatgcatgataagcgagataatgtaactaaattgacagcgcctgaactattttctgtaaaccacaagaagttaatggaggaggcagaaatgtcaatgaaagggacggcaacttcttgtacagttgttggtgctctcattgtcaccatcatgtttgctgtagcattcacagttcctggtggaaataatggtgacacaggcattccagtgttcatagataaaaagttgttcatgatttttatagttttagatactatgtcactcatttcttccacaacttcggcgtttcaaatggtctcaggtacattccattcattggtggatccgcgtctctttggttttggaggtatcgattgcaggttcgttctcagtcgactgatcgtgtgtgaaagaaaggattcttggtgcactggtactcttcccggatccggaggttttgtgtttgactcgacccaaacccggaaacctgaccccacttttccggccaattctggccaccttcggcgacggctctcgctcagatcgacccagactttcctggcggttcttcttgtggtggtcgcttgcatcgaatctcacccacggtggcgcatcgaggcggtgaagatagagggcagtcggactcgattggaaatctcaactccggccgagttggttcaaactccaggtattaaacttgctccacttggtattatctccattttggacagttggattgttatggaggcacttagcggcgtttccggtcggggacctgaggatccggggtcgctgggagtgacctcagccatatacatcgggactccacacctttggccccgtgttgtggatacgatcagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 DUF4219 PGG

Protein Analysis

290

Amino Acids

31.58

Weight (kDa)

6.6

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 43 - 110 2.4e-15 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 378
Acc65I GGTACC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 346
AccI GTMKAC 1 cut(s) 403
AccII CGCG 1 cut(s) 358
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 4 cut(s) 356, 572, 629, 765
AclWI GGATC 6 cut(s) 347, 360, 450, 463, 785, 798
AcoI YGGCCR 3 cut(s) 513, 523, 675
AfaI GTAC 4 cut(s) 24, 151, 334, 445
AfiI CCNNNNNNNGG 4 cut(s) 346, 458, 489, 856
AgsI TTSAA 3 cut(s) 32, 320, 689
AjnI CCWGG 3 cut(s) 205, 567, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
Alw21I GWGCWC 2 cut(s) 166, 440
Alw26I GTCTC 2 cut(s) 331, 365
Alw44I GTGCAC 1 cut(s) 436
AlwI GGATC 6 cut(s) 347, 360, 450, 463, 785, 798
AlwNI CAGNNNCTG 2 cut(s) 74, 206
Aor13HI TCCGGA 1 cut(s) 458
AoxI GGCC 4 cut(s) 513, 523, 675, 845
ApaLI GTGCAC 1 cut(s) 436
Asp700I GAANNNNTTC 1 cut(s) 427
Asp718I GGTACC 1 cut(s) 22
AspLEI GCGC 2 cut(s) 73, 621
AspS9I GGNCC 2 cut(s) 782, 846
AsuC2I CCSGG 3 cut(s) 453, 490, 795
AsuHPI GGTGA 4 cut(s) 166, 233, 599, 643
AvaII GGWCC 1 cut(s) 782
AxyI CCTNAGG 1 cut(s) 786
BaeGI GKGCMC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 525
BamHI GGATCC 3 cut(s) 352, 455, 790
BanI GGYRCC 1 cut(s) 22
Bbv12I GWGCWC 2 cut(s) 166, 440
BbvCI CCTCAGC 1 cut(s) 814
BccI CCATC 1 cut(s) 185
BceAI ACGGC 2 cut(s) 153, 554
BciT130I CCWGG 3 cut(s) 207, 569, 696
BciVI GTATCC 1 cut(s) 853
BcnI CCSGG 3 cut(s) 453, 490, 795
BcoDI GTCTC 2 cut(s) 331, 365
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 378
BfuI GTATCC 1 cut(s) 853
BisI GCNGC 1 cut(s) 766
BlsI GCNGC 1 cut(s) 767
Bme1390I CCNGG 6 cut(s) 207, 453, 490, 569, 696, 795
Bme18I GGWCC 1 cut(s) 782
BmgT120I GGNCC 2 cut(s) 782, 846
BmiI GGNNCC 6 cut(s) 24, 354, 457, 783, 792, 848
BmrFI CCNGG 6 cut(s) 207, 453, 490, 569, 696, 795
BmsI GCATC 2 cut(s) 606, 630
BpmI CTGGAG 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 814
BpuMI CCSGG 3 cut(s) 453, 490, 795
Bsa29I ATCGAT 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 611, 794
BsaWI WCCGGW 2 cut(s) 458, 773
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 4 cut(s) 346, 458, 489, 856
Bse1I ACTGG 2 cut(s) 236, 445
Bse21I CCTNAGG 1 cut(s) 786
BseAI TCCGGA 1 cut(s) 458
BseBI CCWGG 3 cut(s) 207, 569, 696
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 611, 794
BseLI CCNNNNNNNGG 4 cut(s) 346, 458, 489, 856
BseMII CTCAG 5 cut(s) 342, 412, 562, 777, 828
BseNI ACTGG 2 cut(s) 236, 445
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 440
BseX3I CGGCCG 1 cut(s) 675
BseYI CCCAGC 1 cut(s) 802
Bsh1236I CGCG 1 cut(s) 358
Bsh1285I CGRYCG 2 cut(s) 678, 778
BshFI GGCC 4 cut(s) 515, 525, 677, 847
BshNI GGYRCC 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 381
BsiEI CGRYCG 2 cut(s) 678, 778
BsiHKAI GWGCWC 2 cut(s) 166, 440
BsiSI CCGG 7 cut(s) 453, 459, 490, 512, 674, 774, 794
BslFI GGGAC 3 cut(s) 148, 795, 844
BslI CCNNNNNNNGG 4 cut(s) 346, 458, 489, 856
BsmAI GTCTC 2 cut(s) 331, 365
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 3 cut(s) 148, 795, 844
BsmI GAATGC 2 cut(s) 194, 231
BsnI GGCC 4 cut(s) 515, 525, 677, 847
Bso31I GGTCTC 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 166, 440
Bsp13I TCCGGA 1 cut(s) 458
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 6 cut(s) 352, 408, 455, 551, 790, 864
BspACI CCGC 4 cut(s) 356, 572, 629, 765
BspANI GGCC 4 cut(s) 515, 525, 677, 847
BspCNI CTCAG 5 cut(s) 341, 411, 561, 778, 827
BspDI ATCGAT 1 cut(s) 381
BspEI TCCGGA 1 cut(s) 458
BspFNI CGCG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 6 cut(s) 24, 354, 457, 783, 792, 848
BspMI ACCTGC 1 cut(s) 378
BspPI GGATC 6 cut(s) 347, 360, 450, 463, 785, 798
BspT107I GGYRCC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 2 cut(s) 236, 445
BssECI CCNNGG 2 cut(s) 611, 794
BssMI GATC 6 cut(s) 352, 408, 455, 551, 790, 864
Bst2UI CCWGG 3 cut(s) 207, 569, 696
Bst4CI ACNGT 4 cut(s) 154, 202, 615, 740
Bst6I CTCTTC 1 cut(s) 453
BstAUI TGTACA 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 595
BstDEI CTNAG 6 cut(s) 328, 398, 548, 761, 786, 814
BstDSI CCRYGG 1 cut(s) 611
BstFNI CGCG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 2 cut(s) 73, 621
BstKTI GATC 6 cut(s) 355, 411, 458, 554, 793, 867
BstMAI GTCTC 2 cut(s) 331, 365
BstMBI GATC 6 cut(s) 352, 408, 455, 551, 790, 864
BstMCI CGRYCG 2 cut(s) 678, 778
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 3 cut(s) 207, 569, 696
BstSCI CCNGG 6 cut(s) 205, 451, 488, 567, 694, 793
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 440
BstUI CGCG 1 cut(s) 358
BstX2I RGATCY 3 cut(s) 352, 455, 790
BstXI CCANNNNNNTGG 1 cut(s) 843
BstYI RGATCY 3 cut(s) 352, 455, 790
BstZI CGGCCG 1 cut(s) 675
Bsu15I ATCGAT 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 786
BsuI GTATCC 1 cut(s) 853
BsuRI GGCC 4 cut(s) 515, 525, 677, 847
BsuTUI ATCGAT 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 611
BtsIMutI CAGTG 2 cut(s) 243, 438
BveI ACCTGC 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 595
CaiI CAGNNNCTG 2 cut(s) 74, 206
CciI TCATGA 1 cut(s) 261
CfoI GCGC 2 cut(s) 73, 621
Cfr13I GGNCC 2 cut(s) 782, 846
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 1 cut(s) 347
Csp6I GTAC 4 cut(s) 23, 150, 333, 444
CviAII CATG 3 cut(s) 38, 181, 262
CviJI RGCY 6 cut(s) 515, 525, 541, 677, 818, 847
CviKI_1 RGCY 6 cut(s) 515, 525, 541, 677, 818, 847
CviQI GTAC 4 cut(s) 23, 150, 333, 444
DdeI CTNAG 6 cut(s) 328, 398, 548, 761, 786, 814
DpnI GATC 6 cut(s) 354, 410, 457, 553, 792, 866
DpnII GATC 6 cut(s) 352, 408, 455, 551, 790, 864
EaeI YGGCCR 3 cut(s) 513, 523, 675
EagI CGGCCG 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EclXI CGGCCG 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 782
Eco52I CGGCCG 1 cut(s) 675
Eco81I CCTNAGG 1 cut(s) 786
EcoO109I RGGNCCY 1 cut(s) 782
EcoRII CCWGG 3 cut(s) 205, 567, 694
EcoT22I ATGCAT 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 3 cut(s) 41, 184, 265
FaqI GGGAC 3 cut(s) 148, 795, 844
FatI CATG 3 cut(s) 37, 180, 261
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 1 cut(s) 766
Fsp4HI GCNGC 1 cut(s) 766
GlaI GCGC 2 cut(s) 72, 620
GluI GCNGC 1 cut(s) 766
GsaI CCCAGC 1 cut(s) 806
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 4 cut(s) 515, 525, 677, 847
HapII CCGG 7 cut(s) 453, 459, 490, 512, 674, 774, 794
HgaI GACGC 1 cut(s) 347
HhaI GCGC 2 cut(s) 73, 621
Hin1II CATG 3 cut(s) 41, 184, 265
Hin6I GCGC 2 cut(s) 71, 619
HinP1I GCGC 2 cut(s) 71, 619
HincII GTYRAC 1 cut(s) 404
HindII GTYRAC 1 cut(s) 404
HinfI GANTC 5 cut(s) 428, 476, 602, 652, 832
HpaII CCGG 7 cut(s) 453, 459, 490, 512, 674, 774, 794
HphI GGTGA 4 cut(s) 166, 233, 599, 643
Hpy166II GTNNAC 3 cut(s) 91, 404, 438
Hpy188I TCNGA 2 cut(s) 551, 651
Hpy188III TCNNGA 3 cut(s) 262, 459, 829
Hpy8I GTNNAC 3 cut(s) 91, 404, 438
Hpy99I CGWCG 1 cut(s) 540
HpyAV CCTTC 1 cut(s) 539
HpyCH4III ACNGT 4 cut(s) 154, 202, 615, 740
HpyCH4V TGCA 5 cut(s) 4, 37, 387, 438, 597
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 6 cut(s) 328, 398, 548, 761, 786, 814
Hsp92II CATG 3 cut(s) 41, 184, 265
HspAI GCGC 2 cut(s) 71, 619
Kpn2I TCCGGA 1 cut(s) 458
KpnI GGTACC 1 cut(s) 26
Kzo9I GATC 6 cut(s) 352, 408, 455, 551, 790, 864
LmnI GCTCC 1 cut(s) 715
LweI GCATC 2 cut(s) 606, 630
MaeIII GTNAC 5 cut(s) 55, 172, 221, 288, 808
MalI GATC 6 cut(s) 354, 410, 457, 553, 792, 866
MboI GATC 6 cut(s) 352, 408, 455, 551, 790, 864
MboII GAAGA 4 cut(s) 291, 440, 569, 646
MflI RGATCY 3 cut(s) 352, 455, 790
MhlI GDGCHC 2 cut(s) 166, 440
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 2 cut(s) 62, 517
MluNI TGGCCA 1 cut(s) 525
MlyI GAGTC 3 cut(s) 470, 646, 826
MmeI TCCRAC 2 cut(s) 629, 722
MnlI CCTC 9 cut(s) 103, 106, 368, 455, 619, 634, 748, 781, 823
Mox20I TGGCCA 1 cut(s) 525
Mph1103I ATGCAT 1 cut(s) 39
MroI TCCGGA 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 427
MscI TGGCCA 1 cut(s) 525
MseI TTAA 2 cut(s) 104, 702
MslI CAYNNNNRTG 2 cut(s) 179, 236
Msp20I TGGCCA 1 cut(s) 525
MspI CCGG 7 cut(s) 453, 459, 490, 512, 674, 774, 794
MspR9I CCNGG 6 cut(s) 207, 453, 490, 569, 696, 795
Mva1269I GAATGC 2 cut(s) 194, 231
MvaI CCWGG 3 cut(s) 207, 569, 696
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 3 cut(s) 453, 490, 795
NdeII GATC 6 cut(s) 352, 408, 455, 551, 790, 864
NlaIII CATG 3 cut(s) 41, 184, 265
NlaIV GGNNCC 6 cut(s) 24, 354, 457, 783, 792, 848
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 4 cut(s) 172, 221, 288, 808
NsiI ATGCAT 1 cut(s) 39
PagI TCATGA 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 551, 597
PctI GAATGC 2 cut(s) 194, 231
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 2 cut(s) 428, 602
PflMI CCANNNNNTGG 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 451
PkrI GCNGC 1 cut(s) 767
PleI GAGTC 3 cut(s) 470, 646, 826
PpsI GAGTC 3 cut(s) 470, 646, 826
PpuMI RGGWCCY 1 cut(s) 782
Psp5II RGGWCCY 1 cut(s) 782
Psp6I CCWGG 3 cut(s) 205, 567, 694
PspFI CCCAGC 1 cut(s) 802
PspGI CCWGG 3 cut(s) 205, 567, 694
PspN4I GGNNCC 6 cut(s) 24, 354, 457, 783, 792, 848
PspPI GGNCC 2 cut(s) 782, 846
PspPPI RGGWCCY 1 cut(s) 782
PstNI CAGNNNCTG 2 cut(s) 74, 206
PsuI RGATCY 3 cut(s) 352, 455, 790
RsaI GTAC 4 cut(s) 24, 151, 334, 445
RsaNI GTAC 4 cut(s) 23, 150, 333, 444
RseI CAYNNNNRTG 2 cut(s) 179, 236
SalI GTCGAC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 104, 702
SatI GCNGC 1 cut(s) 766
Sau3AI GATC 6 cut(s) 352, 408, 455, 551, 790, 864
Sau96I GGNCC 2 cut(s) 782, 846
SchI GAGTC 3 cut(s) 470, 646, 826
ScrFI CCNGG 6 cut(s) 207, 453, 490, 569, 696, 795
SduI GDGCHC 2 cut(s) 166, 440
SfaNI GCATC 2 cut(s) 606, 630
SfcI CTRYAG 1 cut(s) 189
SinI GGWCC 1 cut(s) 782
SmiMI CAYNNNNRTG 2 cut(s) 179, 236
Sse9I AATT 2 cut(s) 62, 517
SsiI CCGC 4 cut(s) 356, 572, 629, 765
StyD4I CCNGG 6 cut(s) 205, 451, 488, 567, 694, 793
TaaI ACNGT 4 cut(s) 154, 202, 615, 740
TaqI TCGA 7 cut(s) 381, 403, 479, 554, 600, 624, 655
TasI AATT 2 cut(s) 62, 517
TatI WGTACW 1 cut(s) 149
TauI GCSGC 1 cut(s) 768
TfiI GAWTC 2 cut(s) 428, 602
Tru1I TTAA 2 cut(s) 104, 702
Tru9I TTAA 2 cut(s) 104, 702
TscAI CASTG 2 cut(s) 243, 445
TseFI GTSAC 4 cut(s) 172, 221, 288, 808
Tsp45I GTSAC 4 cut(s) 172, 221, 288, 808
TspDTI ATGAA 4 cut(s) 143, 232, 250, 333
TspRI CASTG 2 cut(s) 243, 445
Van91I CCANNNNNTGG 1 cut(s) 346
VneI GTGCAC 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 427
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.