Rmu_sc0002308.1_g000060

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002308.1
N/A
Physical Location & Seq
Reverse (-)
271524 .. 271814
291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ctgtccgacggatcgccgatttcctctgaggacgtagtccaggacggccagatccagccggtgtatcagattttcaaccgatatctcctcttcaccgacgcctacgatggcgattcttcccgccaaaaagaggcttcttcttcttcttcgtctctaaggccgccactgaagaagctcttcctcaaagaccgcaacgcaccttcgatgtcggcctccgaatccgacgagcacgaagccgtccaggaggaagctactgcgagtggtccagaaacgccaaggggggaactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

96

Amino Acids

10.48

Weight (kDa)

4.43

Isoelectric Point (pI)

65.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 121, 161, 190
AclWI GGATC 2 cut(s) 19, 46
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 2 cut(s) 39, 240
AluBI AGCT 2 cut(s) 175, 251
AluI AGCT 2 cut(s) 175, 251
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 19, 46
AoxI GGCC 3 cut(s) 46, 158, 210
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 61, 221
BciT130I CCWGG 2 cut(s) 41, 242
BcoDI GTCTC 1 cut(s) 156
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 2 cut(s) 41, 242
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 2 cut(s) 41, 242
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 58
BseBI CCWGG 2 cut(s) 41, 242
BseDI CCNNGG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 77
BshFI GGCC 3 cut(s) 48, 160, 212
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
BsnI GGCC 3 cut(s) 48, 160, 212
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 11, 51
BspACI CCGC 3 cut(s) 121, 161, 190
BspANI GGCC 3 cut(s) 48, 160, 212
BspCNI CTCAG 1 cut(s) 19
BspPI GGATC 2 cut(s) 19, 46
BspQI GCTCTTC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 2 cut(s) 11, 51
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 41, 242
Bst6I CTCTTC 2 cut(s) 95, 182
BstACI GRCGYC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 27, 155
BstKTI GATC 2 cut(s) 14, 54
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 11, 51
BstNI CCWGG 2 cut(s) 41, 242
BstSCI CCNGG 2 cut(s) 39, 240
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 3 cut(s) 48, 160, 212
BtsIMutI CAGTG 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 107
CviJI RGCY 8 cut(s) 48, 58, 134, 160, 175, 212, 236, 251
CviKI_1 RGCY 8 cut(s) 48, 58, 134, 160, 175, 212, 236, 251
DdeI CTNAG 2 cut(s) 27, 155
DpnI GATC 2 cut(s) 13, 53
DpnII GATC 2 cut(s) 11, 51
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 95, 182
EarI CTCTTC 2 cut(s) 95, 182
Eco130I CCWWGG 1 cut(s) 275
Eco32I GATATC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 39, 240
EcoRV GATATC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 156
FaiI YATR 1 cut(s) 289
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
HaeIII GGCC 3 cut(s) 48, 160, 212
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 99
HinfI GANTC 2 cut(s) 113, 218
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 5 cut(s) 7, 28, 69, 217, 223
Hpy188III TCNNGA 1 cut(s) 266
Hpy99I CGWCG 3 cut(s) 11, 101, 227
HpyAV CCTTC 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 33
HpyF3I CTNAG 2 cut(s) 27, 155
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 11, 51
LguI GCTCTTC 1 cut(s) 182
LpnPI CCDG 8 cut(s) 26, 53, 62, 68, 72, 227, 254, 279
MaeII ACGT 1 cut(s) 33
MalI GATC 2 cut(s) 13, 53
MboI GATC 2 cut(s) 11, 51
MboII GAAGA 8 cut(s) 82, 108, 129, 132, 135, 138, 169, 181
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 231
MmeI TCCRAC 2 cut(s) 30, 246
MnlI CCTC 7 cut(s) 22, 34, 98, 124, 191, 223, 238
MroXI GAANNNNTTC 1 cut(s) 176
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 41, 242
MvaI CCWGG 2 cut(s) 41, 242
NdeII GATC 2 cut(s) 11, 51
PciSI GCTCTTC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 113, 218
PflFI GACNNNGTC 1 cut(s) 35
PfoI TCCNGGA 2 cut(s) 39, 240
PkrI GCNGC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 39, 240
PspGI CCWGG 2 cut(s) 39, 240
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 51
PsyI GACNNNGTC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 182
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 2 cut(s) 11, 51
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 41, 242
SduI GDGCHC 1 cut(s) 231
SetI ASST 4 cut(s) 36, 177, 202, 253
SinI GGWCC 1 cut(s) 263
SsiI CCGC 3 cut(s) 121, 161, 190
StyD4I CCNGG 2 cut(s) 39, 240
StyI CCWWGG 1 cut(s) 275
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 203
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 2 cut(s) 113, 218
TscAI CASTG 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 171
Tth111I GACNNNGTC 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.