Rmu_sc0002313.1_g000020

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002313.1
N/A
Physical Location & Seq
Forward (+)
89653 .. 90183
531 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
atgaagtacaaagattgcgagcattggggagagcagttcaagtatggccgcagtggttttcaatgtaatatacacaatactctcaagatgtacttgaaggctgcggagtacagatcgacaagggctatgttcaatttgggactttcatatgtgctaggtcaacctccaaatccagatgaagctataaagtggttatgtctcgcttcttttgaaggccatgcccgagctcaataccaacttgcacattgtctgcgtcagggtgggaacatgaaagaagcagttgggtggtttttgagagctgccgaaggtggttatgtacatgctatgtataatgtatccatgtgctacaagcatggggaagggttagttcagtgtgatcaccgagcaagaaagtggatgaagttggcagctgattgcggccacagtaaaagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

144

Amino Acids

16.49

Weight (kDa)

9.08

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 107 - 141 1.4e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 49, 104, 417
AcoI YGGCCR 2 cut(s) 46, 418
AfaI GTAC 4 cut(s) 8, 92, 110, 318
AgsI TTSAA 5 cut(s) 40, 62, 97, 133, 212
AluBI AGCT 4 cut(s) 182, 227, 299, 410
AluI AGCT 4 cut(s) 182, 227, 299, 410
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 3 cut(s) 46, 214, 418
ApeKI GCWGC 3 cut(s) 101, 299, 407
AsuHPI GGTGA 1 cut(s) 371
AvaI CYCGRG 1 cut(s) 222
BanII GRGCYC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 3 cut(s) 88, 286, 419
BciVI GTATCC 1 cut(s) 346
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 346
BisI GCNGC 5 cut(s) 49, 102, 300, 408, 418
BlsI GCNGC 5 cut(s) 50, 103, 301, 409, 419
BmeT110I CYCGRG 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 68
BseGI GGATG 1 cut(s) 402
BseXI GCAGC 3 cut(s) 88, 286, 419
BshFI GGCC 3 cut(s) 48, 216, 420
BsiHKAI GWGCWC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 3 cut(s) 48, 216, 420
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 229
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 113, 376
BspACI CCGC 3 cut(s) 49, 104, 417
BspANI GGCC 3 cut(s) 48, 216, 420
BsrGI TGTACA 1 cut(s) 316
BssMI GATC 2 cut(s) 113, 376
Bst4CI ACNGT 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 20
BstF5I GGATG 1 cut(s) 402
BstKTI GATC 2 cut(s) 116, 379
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 113, 376
BstNSI RCATGY 1 cut(s) 323
BstV1I GCAGC 3 cut(s) 88, 286, 419
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 3 cut(s) 48, 216, 420
BtsCI GGATG 1 cut(s) 402
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 2 cut(s) 58, 377
Cac8I GCNNGC 1 cut(s) 20
CseI GACGC 1 cut(s) 242
Csp6I GTAC 4 cut(s) 7, 91, 109, 317
CviAII CATG 5 cut(s) 218, 268, 320, 340, 353
CviJI RGCY 9 cut(s) 48, 101, 125, 182, 216, 227, 299, 410, 420
CviKI_1 RGCY 9 cut(s) 48, 101, 125, 182, 216, 227, 299, 410, 420
CviQI GTAC 4 cut(s) 7, 91, 109, 317
DpnI GATC 2 cut(s) 115, 378
DpnII GATC 2 cut(s) 113, 376
EaeI YGGCCR 2 cut(s) 46, 418
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 229
FaeI CATG 5 cut(s) 221, 271, 323, 343, 356
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 1 cut(s) 153
FatI CATG 5 cut(s) 217, 267, 319, 339, 352
FauNDI CATATG 1 cut(s) 148
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 5 cut(s) 49, 102, 300, 408, 418
FokI GGATG 1 cut(s) 409
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 5 cut(s) 49, 102, 300, 408, 418
FspBI CTAG 1 cut(s) 155
GluI GCNGC 5 cut(s) 49, 102, 300, 408, 418
HaeIII GGCC 3 cut(s) 48, 216, 420
HgaI GACGC 1 cut(s) 242
Hin1II CATG 5 cut(s) 221, 271, 323, 343, 356
HincII GTYRAC 1 cut(s) 161
HindII GTYRAC 1 cut(s) 161
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 161
Hpy188III TCNNGA 2 cut(s) 85, 173
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 4 cut(s) 91, 206, 299, 353
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 1 cut(s) 242
Hsp92II CATG 5 cut(s) 221, 271, 323, 343, 356
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 2 cut(s) 113, 376
LpnPI CCDG 2 cut(s) 186, 242
Lsp1109I GCAGC 3 cut(s) 88, 286, 419
MaeI CTAG 1 cut(s) 155
MalI GATC 2 cut(s) 115, 378
MboI GATC 2 cut(s) 113, 376
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 1 cut(s) 133
MnlI CCTC 1 cut(s) 174
MseI TTAA 1 cut(s) 433
MspA1I CMGCKG 1 cut(s) 410
NdeI CATATG 1 cut(s) 148
NdeII GATC 2 cut(s) 113, 376
NlaIII CATG 5 cut(s) 221, 271, 323, 343, 356
NspI RCATGY 1 cut(s) 323
PkrI GCNGC 5 cut(s) 50, 103, 301, 409, 419
Psp124BI GAGCTC 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 4 cut(s) 8, 92, 110, 318
RsaNI GTAC 4 cut(s) 7, 91, 109, 317
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 5 cut(s) 49, 102, 300, 408, 418
Sau3AI GATC 2 cut(s) 113, 376
SduI GDGCHC 1 cut(s) 229
SetI ASST 7 cut(s) 160, 166, 184, 229, 301, 310, 412
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 133
SsiI CCGC 3 cut(s) 49, 104, 417
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 1 cut(s) 229
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 116
TasI AATT 1 cut(s) 133
TatI WGTACW 4 cut(s) 6, 90, 108, 316
TauI GCSGC 2 cut(s) 51, 420
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TscAI CASTG 2 cut(s) 58, 377
TseI GCWGC 3 cut(s) 101, 299, 407
TspDTI ATGAA 5 cut(s) 17, 135, 192, 284, 413
TspRI CASTG 2 cut(s) 58, 377
XceI RCATGY 1 cut(s) 323
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.