Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002316.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

149409 .. 152033

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002316.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggttatagtaggggagttcgtaggaggtgctgctcttggagcagcatttggggtattgtttgatgttgtgaatgaagcagttgacaagcctactgccttgaaatccctccttgagaatatcaaattttcactacactttctgaaaccagtgattgaaaagataggagagcataatgtggtactgggtctcccagatgaagaaataaagtatcttctaacagaaatggaggagggtgtaaagctcgtccgcaagtcatcaaaggtcaagttaaaggctgctactgggaatcccaggcttgatgccattcttcgtaaaggaggctttgggacagttttcaagggttgggtggatgagacgacgcttacaccttctaagctgcttggcactggaatggctgttgctgtcaagagattgaacacagaaattgcgggtcaacttcctagggctttctcatcccaacctatcaagcttttgggatactatagtgagaaacaagagaagctctttgtttacgagttcatgccaaatgaaagcttacatgatcgtctttttaggactacggatccctgggggggggtgattattaagagcaagtccaccggtttgtttttgaccggtcaccagctagatcttgctcaggtggtgaccatggaggggaaaaaacagtttccagcggatgtcgaacagaaagcaaggaacaccagaagcctgagaatggctgccgggaacgagcgtgataaggtgatcaagtttcatacctcatgcatcgtcaatggtcaccgaagtcgccggaaaacgtgtcggaagcatcgaagcttttgggtttccattctctcttctcactttatgcatggacgatccaagacaacaggcagaaccatggtgaatagaggagtcgaacttggccggtgggtcgccttgtcgtggccggaaagtggagatgcagtcggatcgctggcacgggtcgcgggtcgggaaaacgggtctcgagctctaacttggaatggggctttttgggtcattgatccaatttcgatcctttatatatttgaaatcaatgatccagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

357

Amino Acids

39.67

Weight (kDa)

9.71

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	971
AciI	CCGC	4 cut(s)	250, 431, 677, 971
AclWI	GGATC	7 cut(s)	560, 573, 855, 961, 1022, 1033, 1058
AcoI	YGGCCR	2 cut(s)	907, 929
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	6 cut(s)	575, 576, 657, 718, 927, 938
AflIII	ACRYGT	1 cut(s)	800
AgeI	ACCGGT	2 cut(s)	602, 617
AgsI	TTSAA	5 cut(s)	103, 158, 340, 418, 1055
AjnI	CCWGG	2 cut(s)	293, 569
AluBI	AGCT	8 cut(s)	244, 379, 472, 505, 537, 628, 819, 995
AluI	AGCT	8 cut(s)	244, 379, 472, 505, 537, 628, 819, 995
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	3 cut(s)	194, 350, 993
AlwI	GGATC	7 cut(s)	560, 573, 855, 961, 1022, 1033, 1058
Ama87I	CYCGRG	1 cut(s)	990
AoxI	GGCC	2 cut(s)	907, 929
ApeKI	GCWGC	5 cut(s)	32, 44, 278, 379, 722
ApoI	RAATTY	1 cut(s)	125
AsiGI	ACCGGT	2 cut(s)	602, 617
AspA2I	CCTAGG	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	727
AsuHPI	GGTGA	6 cut(s)	592, 614, 658, 757, 773, 898
AvaI	CYCGRG	1 cut(s)	990
AvrII	CCTAGG	1 cut(s)	443
BaeI	ACNNNNGTAYC	2 cut(s)	472, 505
BamHI	GGATCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	997
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	5 cut(s)	19, 56, 265, 366, 709
BcgI	CGANNNNNNTGC	2 cut(s)	936, 970
BciT130I	CCWGG	2 cut(s)	295, 571
BciVI	GTATCC	1 cut(s)	473
BclI	TGATCA	1 cut(s)	747
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	3 cut(s)	194, 350, 993
BfaI	CTAG	2 cut(s)	444, 629
BfmI	CTRYAG	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	473
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	5 cut(s)	33, 45, 279, 380, 723
BlnI	CCTAGG	1 cut(s)	443
BlsI	GCNGC	5 cut(s)	34, 46, 280, 381, 724
Bme1390I	CCNGG	3 cut(s)	295, 571, 727
BmeT110I	CYCGRG	1 cut(s)	990
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	3 cut(s)	295, 571, 727
BmrI	ACTGGG	2 cut(s)	194, 294
BmsI	GCATC	4 cut(s)	292, 777, 820, 934
BmuI	ACTGGG	2 cut(s)	194, 294
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	727
BsaI	GGTCTC	2 cut(s)	194, 993
BsaJI	CCNNGG	6 cut(s)	293, 443, 569, 570, 651, 882
BsaWI	WCCGGW	2 cut(s)	602, 617
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 933, 963
Bsc4I	CCNNNNNNNGG	6 cut(s)	575, 576, 657, 718, 927, 938
Bse118I	RCCGGY	3 cut(s)	602, 617, 909
Bse1I	ACTGG	4 cut(s)	149, 189, 289, 394
BseBI	CCWGG	2 cut(s)	295, 571
BseDI	CCNNGG	6 cut(s)	293, 443, 569, 570, 651, 882
BseGI	GGATG	3 cut(s)	358, 455, 685
BseLI	CCNNNNNNNGG	6 cut(s)	575, 576, 657, 718, 927, 938
BseMII	CTCAG	2 cut(s)	653, 704
BseNI	ACTGG	4 cut(s)	149, 189, 289, 394
BseRI	GAGGAG	2 cut(s)	245, 909
BseXI	GCAGC	5 cut(s)	19, 56, 265, 366, 709
Bsh1236I	CGCG	1 cut(s)	971
BshFI	GGCC	2 cut(s)	909, 931
BshTI	ACCGGT	2 cut(s)	602, 617
BsiHKAI	GWGCWC	1 cut(s)	997
BsiHKCI	CYCGRG	1 cut(s)	990
BsiSI	CCGG	6 cut(s)	603, 618, 726, 793, 910, 932
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	6 cut(s)	575, 576, 657, 718, 927, 938
BsmAI	GTCTC	3 cut(s)	194, 350, 993
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	909, 931
Bso31I	GGTCTC	2 cut(s)	194, 993
BsoBI	CYCGRG	1 cut(s)	990
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp143I	GATC	9 cut(s)	544, 565, 631, 747, 860, 953, 1027, 1038, 1063
Bsp19I	CCATGG	2 cut(s)	651, 882
BspACI	CCGC	4 cut(s)	250, 431, 677, 971
BspANI	GGCC	2 cut(s)	909, 931
BspCNI	CTCAG	2 cut(s)	652, 705
BspFNI	CGCG	1 cut(s)	971
BspLI	GGNNCC	1 cut(s)	567
BspPI	GGATC	7 cut(s)	560, 573, 855, 961, 1022, 1033, 1058
BspTNI	GGTCTC	2 cut(s)	194, 993
BsrFI	RCCGGY	3 cut(s)	602, 617, 909
BsrI	ACTGG	4 cut(s)	149, 189, 289, 394
BssAI	RCCGGY	3 cut(s)	602, 617, 909
BssECI	CCNNGG	6 cut(s)	293, 443, 569, 570, 651, 882
BssMI	GATC	9 cut(s)	544, 565, 631, 747, 860, 953, 1027, 1038, 1063
BssT1I	CCWWGG	3 cut(s)	443, 651, 882
Bst2UI	CCWGG	2 cut(s)	295, 571
Bst4CI	ACNGT	2 cut(s)	334, 669
Bst6I	CTCTTC	1 cut(s)	844
BstC8I	GCNNGC	1 cut(s)	960
BstDEI	CTNAG	3 cut(s)	375, 639, 713
BstDSI	CCRYGG	2 cut(s)	651, 882
BstEII	GGTNACC	3 cut(s)	620, 646, 779
BstF5I	GGATG	3 cut(s)	358, 455, 685
BstFNI	CGCG	1 cut(s)	971
BstKTI	GATC	9 cut(s)	547, 568, 634, 750, 863, 956, 1030, 1041, 1066
BstMAI	GTCTC	3 cut(s)	194, 350, 993
BstMBI	GATC	9 cut(s)	544, 565, 631, 747, 860, 953, 1027, 1038, 1063
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 968
BstNI	CCWGG	2 cut(s)	295, 571
BstPI	GGTNACC	3 cut(s)	620, 646, 779
BstSCI	CCNGG	3 cut(s)	293, 569, 725
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	971
BstV1I	GCAGC	5 cut(s)	19, 56, 265, 366, 709
BstX2I	RGATCY	2 cut(s)	565, 631
BstYI	RGATCY	2 cut(s)	565, 631
BsuI	GTATCC	1 cut(s)	473
BsuRI	GGCC	2 cut(s)	909, 931
BtgI	CCRYGG	2 cut(s)	651, 882
BtsCI	GGATG	3 cut(s)	358, 455, 685
BtsIMutI	CAGTG	2 cut(s)	156, 387
Cac8I	GCNNGC	1 cut(s)	960
Cfr10I	RCCGGY	3 cut(s)	602, 617, 909
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	182
CspAI	ACCGGT	2 cut(s)	602, 617
CviAII	CATG	6 cut(s)	523, 542, 652, 765, 854, 883
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	3 cut(s)	375, 639, 713
DpnI	GATC	9 cut(s)	546, 567, 633, 749, 862, 955, 1029, 1040, 1065
DpnII	GATC	9 cut(s)	544, 565, 631, 747, 860, 953, 1027, 1038, 1063
EaeI	YGGCCR	2 cut(s)	907, 929
Eam1104I	CTCTTC	1 cut(s)	844
EarI	CTCTTC	1 cut(s)	844
Ecl136II	GAGCTC	1 cut(s)	995
Eco130I	CCWWGG	3 cut(s)	443, 651, 882
Eco24I	GRGCYC	1 cut(s)	997
Eco31I	GGTCTC	2 cut(s)	194, 993
Eco53kI	GAGCTC	1 cut(s)	995
Eco88I	CYCGRG	1 cut(s)	990
Eco91I	GGTNACC	3 cut(s)	620, 646, 779
EcoICRI	GAGCTC	1 cut(s)	995
EcoO65I	GGTNACC	3 cut(s)	620, 646, 779
EcoRII	CCWGG	2 cut(s)	293, 569
EcoT14I	CCWWGG	3 cut(s)	443, 651, 882
EcoT22I	ATGCAT	2 cut(s)	770, 855
EcoT38I	GRGCYC	1 cut(s)	997
ErhI	CCWWGG	3 cut(s)	443, 651, 882
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	6 cut(s)	526, 545, 655, 768, 857, 886
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	6 cut(s)	522, 541, 651, 764, 853, 882
FauI	CCCGC	2 cut(s)	424, 964
FbaI	TGATCA	1 cut(s)	747
Fnu4HI	GCNGC	5 cut(s)	33, 45, 279, 380, 723
FokI	GGATG	3 cut(s)	365, 442, 692
FriOI	GRGCYC	1 cut(s)	997
Fsp4HI	GCNGC	5 cut(s)	33, 45, 279, 380, 723
FspBI	CTAG	2 cut(s)	444, 629
GluI	GCNGC	5 cut(s)	33, 45, 279, 380, 723
HaeIII	GGCC	2 cut(s)	909, 931
HapII	CCGG	6 cut(s)	603, 618, 726, 793, 910, 932
HgaI	GACGC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	526, 545, 655, 768, 857, 886
HincII	GTYRAC	2 cut(s)	85, 437
HindII	GTYRAC	2 cut(s)	85, 437
HindIII	AAGCTT	3 cut(s)	470, 535, 817
HinfI	GANTC	2 cut(s)	289, 897
HpaII	CCGG	6 cut(s)	603, 618, 726, 793, 910, 932
HphI	GGTGA	6 cut(s)	592, 614, 658, 757, 773, 898
Hpy166II	GTNNAC	4 cut(s)	85, 437, 514, 600
Hpy188I	TCNGA	3 cut(s)	144, 807, 953
Hpy188III	TCNNGA	4 cut(s)	409, 977, 990, 1067
Hpy8I	GTNNAC	4 cut(s)	85, 437, 514, 600
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	2 cut(s)	334, 669
HpyCH4IV	ACGT	1 cut(s)	800
HpyCH4V	TGCA	3 cut(s)	768, 853, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 968
HpyF3I	CTNAG	3 cut(s)	375, 639, 713
HpySE526I	ACGT	1 cut(s)	800
Hsp92II	CATG	6 cut(s)	526, 545, 655, 768, 857, 886
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	9 cut(s)	544, 565, 631, 747, 860, 953, 1027, 1038, 1063
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	5 cut(s)	19, 56, 265, 366, 709
LweI	GCATC	4 cut(s)	292, 777, 820, 934
MaeI	CTAG	2 cut(s)	444, 629
MaeII	ACGT	1 cut(s)	800
MaeIII	GTNAC	3 cut(s)	620, 646, 779
MalI	GATC	9 cut(s)	546, 567, 633, 749, 862, 955, 1029, 1040, 1065
MboI	GATC	9 cut(s)	544, 565, 631, 747, 860, 953, 1027, 1038, 1063
MboII	GAAGA	4 cut(s)	206, 212, 302, 831
MflI	RGATCY	2 cut(s)	565, 631
MhlI	GDGCHC	1 cut(s)	997
MluCI	AATT	3 cut(s)	125, 426, 1032
MlyI	GAGTC	1 cut(s)	906
MmeI	TCCRAC	2 cut(s)	785, 931
MnlI	CCTC	8 cut(s)	20, 119, 223, 226, 314, 649, 772, 887
Mph1103I	ATGCAT	2 cut(s)	770, 855
MseI	TTAA	2 cut(s)	272, 588
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	6 cut(s)	603, 618, 726, 793, 910, 932
MspR9I	CCNGG	3 cut(s)	295, 571, 727
MvaI	CCWGG	2 cut(s)	295, 571
MvnI	CGCG	1 cut(s)	971
MwoI	GCNNNNNNNGC	2 cut(s)	41, 968
NciI	CCSGG	1 cut(s)	727
NcoI	CCATGG	2 cut(s)	651, 882
NdeII	GATC	9 cut(s)	544, 565, 631, 747, 860, 953, 1027, 1038, 1063
NlaIII	CATG	6 cut(s)	526, 545, 655, 768, 857, 886
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	3 cut(s)	620, 646, 779
NsiI	ATGCAT	2 cut(s)	770, 855
PaeR7I	CTCGAG	1 cut(s)	990
PasI	CCCWGGG	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	811
PfeI	GAWTC	1 cut(s)	289
PinAI	ACCGGT	2 cut(s)	602, 617
PkrI	GCNGC	5 cut(s)	34, 46, 280, 381, 724
PleI	GAGTC	1 cut(s)	905
PpsI	GAGTC	1 cut(s)	905
Psp124BI	GAGCTC	1 cut(s)	997
Psp6I	CCWGG	2 cut(s)	293, 569
PspEI	GGTNACC	3 cut(s)	620, 646, 779
PspGI	CCWGG	2 cut(s)	293, 569
PspN4I	GGNNCC	1 cut(s)	567
PsuI	RGATCY	2 cut(s)	565, 631
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	997
SaqAI	TTAA	2 cut(s)	272, 588
SatI	GCNGC	5 cut(s)	33, 45, 279, 380, 723
Sau3AI	GATC	9 cut(s)	544, 565, 631, 747, 860, 953, 1027, 1038, 1063
SchI	GAGTC	1 cut(s)	906
ScrFI	CCNGG	3 cut(s)	295, 571, 727
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	4 cut(s)	292, 777, 820, 934
SfcI	CTRYAG	1 cut(s)	484
Sfr274I	CTCGAG	1 cut(s)	990
SlaI	CTCGAG	1 cut(s)	990
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	113, 990
SmoI	CTYRAG	2 cut(s)	113, 990
Sse9I	AATT	3 cut(s)	125, 426, 1032
SsiI	CCGC	4 cut(s)	250, 431, 677, 971
SspMI	CTAG	2 cut(s)	444, 629
SstI	GAGCTC	1 cut(s)	997
StyD4I	CCNGG	3 cut(s)	293, 569, 725
StyI	CCWWGG	3 cut(s)	443, 651, 882
TaaI	ACNGT	2 cut(s)	334, 669
TaiI	ACGT	1 cut(s)	803
TaqI	TCGA	5 cut(s)	684, 814, 900, 991, 1037
TasI	AATT	3 cut(s)	125, 426, 1032
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	272, 588
Tru9I	TTAA	2 cut(s)	272, 588
TscAI	CASTG	2 cut(s)	156, 394
TseFI	GTSAC	3 cut(s)	620, 646, 779
TseI	GCWGC	5 cut(s)	32, 44, 278, 379, 722
Tsp45I	GTSAC	3 cut(s)	620, 646, 779
TspDTI	ATGAA	5 cut(s)	90, 213, 511, 546, 746
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	2 cut(s)	156, 394
XapI	RAATTY	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	990
XmaJI	CCTAGG	1 cut(s)	443
XspI	CTAG	2 cut(s)	444, 629
Zsp2I	ATGCAT	2 cut(s)	770, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.