Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002322.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

236377 .. 236838

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgctccttctgaagttccctactcccaaggagacaggctgtgtgaagggaagtcaacagctggcacgcgaatgttattcaacaaccgtgtcgcggtcgacacgccgccacgaaatccttgcaacaggaaaccaggcacgagcaccggatatctttgaggaccccagggatgatgagaagaaatatgtcaaaaaagagcctgtcaacccggaaacttccctaaagattatcagcatctcggatgaacacctagagcggacagtccgcatcggcgctcagtttgacccagaggtagcagcggaactcacccagttcctgcgtgacaaggctgctgtctttgcatggtcctatgttgacatgccaggcatctcccccgagatcatcacgcgcaaactaagtatcaaaccatccgcctaccctgtcaagcagccgcgaagggcctttcacgaggaaaagaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

153

Amino Acids

17.47

Weight (kDa)

9.1

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	98
AccII	CGCG	4 cut(s)	69, 94, 388, 433
AciI	CCGC	7 cut(s)	94, 106, 256, 265, 299, 411, 431
AcuI	CTGAAG	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	81
AjnI	CCWGG	3 cut(s)	132, 164, 361
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	26
AlwNI	CAGNNNCTG	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	3 cut(s)	296, 329, 427
AspLEI	GCGC	2 cut(s)	275, 390
AspS9I	GGNCC	3 cut(s)	160, 345, 438
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	160, 345
BauI	CACGAG	2 cut(s)	138, 446
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	308, 316, 439
BccI	CCATC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	3 cut(s)	134, 166, 363
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	276
BisI	GCNGC	5 cut(s)	106, 297, 330, 428, 431
BlsI	GCNGC	5 cut(s)	107, 298, 331, 429, 432
Bme1390I	CCNGG	4 cut(s)	134, 166, 209, 363
Bme18I	GGWCC	2 cut(s)	160, 345
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	3 cut(s)	160, 345, 438
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	4 cut(s)	134, 166, 209, 363
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	3 cut(s)	243, 276, 375
BmuI	ACTGGG	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	27, 164, 165
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	3 cut(s)	134, 166, 363
BseDI	CCNNGG	3 cut(s)	27, 164, 165
BseGI	GGATG	3 cut(s)	175, 247, 407
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	308, 316, 439
Bsh1236I	CGCG	4 cut(s)	69, 94, 388, 433
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	440
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	146, 209
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	440
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	378
BspACI	CCGC	7 cut(s)	94, 106, 256, 265, 299, 411, 431
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	4 cut(s)	69, 94, 388, 433
BspLI	GGNNCC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	27, 164, 165
BssMI	GATC	1 cut(s)	378
BssSI	CACGAG	2 cut(s)	138, 446
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	2 cut(s)	138, 446
Bst2UI	CCWGG	3 cut(s)	134, 166, 363
Bst4CI	ACNGT	2 cut(s)	88, 262
BstC8I	GCNNGC	2 cut(s)	63, 67
BstDEI	CTNAG	2 cut(s)	276, 395
BstF5I	GGATG	3 cut(s)	175, 247, 407
BstFNI	CGCG	4 cut(s)	69, 94, 388, 433
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	275, 390
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	378
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	3 cut(s)	134, 166, 363
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	4 cut(s)	132, 164, 207, 361
BstUI	CGCG	4 cut(s)	69, 94, 388, 433
BstV1I	GCAGC	3 cut(s)	308, 316, 439
BsuRI	GGCC	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	175, 247, 407
Cac8I	GCNNGC	2 cut(s)	63, 67
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	2 cut(s)	275, 390
Cfr13I	GGNCC	3 cut(s)	160, 345, 438
CviAII	CATG	2 cut(s)	342, 358
CviJI	RGCY	6 cut(s)	39, 61, 199, 329, 430, 440
CviKI_1	RGCY	6 cut(s)	39, 61, 199, 329, 430, 440
DdeI	CTNAG	2 cut(s)	276, 395
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	160, 345
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	374
EcoO109I	RGGNCCY	2 cut(s)	160, 438
EcoRII	CCWGG	3 cut(s)	132, 164, 361
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	345, 361
FaiI	YATR	4 cut(s)	186, 343, 351, 359
FatI	CATG	2 cut(s)	341, 357
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	5 cut(s)	106, 297, 330, 428, 431
FokI	GGATG	3 cut(s)	182, 254, 394
Fsp4HI	GCNGC	5 cut(s)	106, 297, 330, 428, 431
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	274, 389
GluI	GCNGC	5 cut(s)	106, 297, 330, 428, 431
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	2 cut(s)	146, 209
HhaI	GCGC	2 cut(s)	275, 390
Hin1II	CATG	2 cut(s)	345, 361
Hin6I	GCGC	2 cut(s)	273, 388
HinP1I	GCGC	2 cut(s)	273, 388
HincII	GTYRAC	4 cut(s)	56, 99, 205, 355
HindII	GTYRAC	4 cut(s)	56, 99, 205, 355
HpaII	CCGG	2 cut(s)	146, 209
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	4 cut(s)	56, 99, 205, 355
Hpy188I	TCNGA	2 cut(s)	12, 241
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	4 cut(s)	56, 99, 205, 355
HpyAV	CCTTC	3 cut(s)	17, 40, 429
HpyCH4III	ACNGT	2 cut(s)	88, 262
HpyCH4V	TGCA	2 cut(s)	122, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	276, 395
Hsp92II	CATG	2 cut(s)	345, 361
HspAI	GCGC	2 cut(s)	273, 388
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	3 cut(s)	308, 316, 439
LweI	GCATC	3 cut(s)	243, 276, 375
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	1 cut(s)	380
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	378
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	151, 283, 442, 450
MslI	CAYNNNNRTG	1 cut(s)	70
MspA1I	CMGCKG	2 cut(s)	61, 299
MspI	CCGG	2 cut(s)	146, 209
MspR9I	CCNGG	4 cut(s)	134, 166, 209, 363
MvaI	CCWGG	3 cut(s)	134, 166, 363
MvnI	CGCG	4 cut(s)	69, 94, 388, 433
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	2 cut(s)	345, 361
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	361
PasI	CCCWGGG	1 cut(s)	165
PkrI	GCNGC	5 cut(s)	107, 298, 331, 429, 432
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	3 cut(s)	132, 164, 361
PspGI	CCWGG	3 cut(s)	132, 164, 361
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	160, 345, 438
PspPPI	RGGWCCY	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	70
SalI	GTCGAC	1 cut(s)	97
SatI	GCNGC	5 cut(s)	106, 297, 330, 428, 431
Sau3AI	GATC	1 cut(s)	378
Sau96I	GGNCC	3 cut(s)	160, 345, 438
ScrFI	CCNGG	4 cut(s)	134, 166, 209, 363
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	4 cut(s)	63, 252, 294, 461
SfaNI	GCATC	3 cut(s)	243, 276, 375
SinI	GGWCC	2 cut(s)	160, 345
SmiMI	CAYNNNNRTG	1 cut(s)	70
SsiI	CCGC	7 cut(s)	94, 106, 256, 265, 299, 411, 431
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	4 cut(s)	132, 164, 207, 361
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	88, 262
TaqI	TCGA	1 cut(s)	98
TauI	GCSGC	2 cut(s)	108, 433
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	3 cut(s)	296, 329, 427
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	258
VpaK11BI	GGWCC	2 cut(s)	160, 345
XceI	RCATGY	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.