Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002329.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16718 .. 17068

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgtcgtctatggagatcgacaatcccatgccgatatcgtccatggagatcgacaatcccagtccgatgtcgtctatggagatcgataatcccaagccaaacacctccaatcagtgtggccattctccgatccattcctttggggagagatcaaaatggaaaaacgaaaccgaaaaatcccagaaagcaaagatgaagatgccagaagagtacgatctagccaggtcgaacgactgcgcagagtacatgagggagagaaagaagaaggcgatggaggctgaggtgaggagagagctcgatcggagaagacatgaggaggagaggacagagagggaggagagaaagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

116

Amino Acids

13.82

Weight (kDa)

6.34

Isoelectric Point (pI)

94.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	238
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	118
AfaI	GTAC	2 cut(s)	212, 245
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	279
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	223
BfaI	CTAG	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	223
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	313
Bpu10I	CCTNAGC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	4 cut(s)	301, 329, 332, 350
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	120
BshVI	ATCGAT	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	7 cut(s)	15, 48, 81, 129, 149, 214, 298
Bsp19I	CCATGG	1 cut(s)	42
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	271
BspDI	ATCGAT	1 cut(s)	84
BspPI	GGATC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	7 cut(s)	15, 48, 81, 129, 149, 214, 298
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	7 cut(s)	18, 51, 84, 132, 152, 217, 301
BstMBI	GATC	7 cut(s)	15, 48, 81, 129, 149, 214, 298
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	120
BsuTUI	ATCGAT	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	239
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	211, 244
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	4 cut(s)	28, 43, 247, 311
CviJI	RGCY	5 cut(s)	97, 120, 221, 278, 295
CviKI_1	RGCY	5 cut(s)	97, 120, 221, 278, 295
CviQI	GTAC	2 cut(s)	211, 244
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	7 cut(s)	17, 50, 83, 131, 151, 216, 300
DpnII	GATC	7 cut(s)	15, 48, 81, 129, 149, 214, 298
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	221
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	4 cut(s)	31, 46, 250, 314
FaiI	YATR	6 cut(s)	11, 29, 44, 77, 248, 312
FatI	CATG	4 cut(s)	27, 42, 246, 310
FriOI	GRGCYC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	218
FspI	TGCGCA	1 cut(s)	238
GlaI	GCGC	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	31, 46, 250, 314
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	3 cut(s)	66, 129, 303
HpyAV	CCTTC	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	31, 46, 250, 314
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	7 cut(s)	15, 48, 81, 129, 149, 214, 298
LpnPI	CCDG	5 cut(s)	73, 194, 208, 216, 235
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	218
MalI	GATC	7 cut(s)	17, 50, 83, 131, 151, 216, 300
MboI	GATC	7 cut(s)	15, 48, 81, 129, 149, 214, 298
MboII	GAAGA	4 cut(s)	208, 218, 274, 318
MhlI	GDGCHC	1 cut(s)	297
MlsI	TGGCCA	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	120
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	7 cut(s)	15, 48, 81, 129, 149, 214, 298
NlaIII	CATG	4 cut(s)	31, 46, 250, 314
NsbI	TGCGCA	1 cut(s)	238
Ple19I	CGATCG	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PvuI	CGATCG	1 cut(s)	301
RsaI	GTAC	2 cut(s)	212, 245
RsaNI	GTAC	2 cut(s)	211, 244
SacI	GAGCTC	1 cut(s)	297
Sau3AI	GATC	7 cut(s)	15, 48, 81, 129, 149, 214, 298
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	4 cut(s)	107, 227, 285, 297
SfaNI	GCATC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	218
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	42
TaqI	TCGA	5 cut(s)	18, 51, 84, 227, 297
TatI	WGTACW	1 cut(s)	243
TscAI	CASTG	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	119
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.