Rmu_sc0002337.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002337.1
N/A
Physical Location & Seq
Forward (+)
12428 .. 14279
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
atgagatatttgagtagtgtaggacttggtttgagtgtggtttttggttgcttattcttggctctaattgctgagctttactacttgctgtggtggaagaagaggctgaccaacagagagatagaagatgactacagcagcccatcaaaggaggtgttctacatgttctgctggagaaggacttccaagagaggtgtgactgatcggtggtggcaacaaggggcgacggcggcggcggtgctacttcatggttggtggtgcgcatctgctatattcctacgtcacctggaggatgggctgagggtatttgggctgctgctgtttggaccatgtaggagcacatggtcacaacctcctagtggcaatgatgtgtctgctctaggaaggcggcgagttctttgtcttaactgcccctatcctccccctctctcttctcctccgcccactgctcttcctctctctcatatcccagctcctcttctccgcctccctctctcatttccaaattgttttggtttaatggaggacagaggaactagatctgttttctctctctcctccgacaccacttccagtcaccaccgtgactcacctccaccatcacggacctcactgacctccgacgagtttaacgctgcctggtcgagcccctctgctccgcctcccagtctctcatctcctccacccactgccctccctctccctcatctcccaacccctcttctctgtctcccagacgtcactgattttgcatttcacatttggaggcatgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.86

Weight (kDa)

8.68

Isoelectric Point (pI)

75.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 741
Acc16I TGCGCA 1 cut(s) 262
AciI CCGC 7 cut(s) 230, 233, 236, 388, 440, 484, 659
AcyI GRCGYC 1 cut(s) 738
AfiI CCNNNNNNNGG 2 cut(s) 148, 359
AflIII ACRYGT 1 cut(s) 162
AjnI CCWGG 2 cut(s) 285, 638
AleI CACNNNNGTG 1 cut(s) 582
AluBI AGCT 2 cut(s) 76, 473
AluI AGCT 2 cut(s) 76, 473
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 2 cut(s) 674, 734
ApeKI GCWGC 4 cut(s) 138, 313, 316, 635
Asp700I GAANNNNTTC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 326, 606
AsuHPI GGTGA 3 cut(s) 275, 569, 582
AvaII GGWCC 2 cut(s) 326, 606
BanII GRGCYC 1 cut(s) 650
Bbv12I GWGCWC 1 cut(s) 341
BbvCI CCTCAGC 1 cut(s) 299
BbvI GCAGC 4 cut(s) 150, 300, 303, 622
BccI CCATC 3 cut(s) 151, 287, 607
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 2 cut(s) 287, 640
BcoDI GTCTC 2 cut(s) 674, 734
BfaI CTAG 3 cut(s) 357, 380, 537
BfmI CTRYAG 1 cut(s) 133
BglII AGATCT 1 cut(s) 539
BisI GCNGC 7 cut(s) 139, 231, 234, 314, 317, 389, 636
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 7 cut(s) 140, 232, 235, 315, 318, 390, 637
Bme1390I CCNGG 2 cut(s) 287, 640
Bme18I GGWCC 2 cut(s) 326, 606
BmgT120I GGNCC 2 cut(s) 326, 606
BmrFI CCNGG 2 cut(s) 287, 640
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 1 cut(s) 272
BmuI ACTGGG 1 cut(s) 660
BpmI CTGGAG 2 cut(s) 193, 308
Bpu10I CCTNAGC 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 738
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 359
Bse1I ACTGG 2 cut(s) 573, 666
Bse3DI GCAATG 1 cut(s) 370
BseBI CCWGG 2 cut(s) 287, 640
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 148, 359
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 63, 290
BseNI ACTGG 2 cut(s) 573, 666
BseRI GAGGAG 4 cut(s) 426, 465, 547, 669
BseXI GCAGC 4 cut(s) 150, 300, 303, 622
BseYI CCCAGC 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 148, 359
BsmAI GTCTC 2 cut(s) 674, 734
Bsp1286I GDGCHC 2 cut(s) 341, 650
Bsp143I GATC 2 cut(s) 202, 539
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 7 cut(s) 230, 233, 236, 388, 440, 484, 659
BspCNI CTCAG 2 cut(s) 64, 291
BspQI GCTCTTC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 2 cut(s) 573, 666
BssMI GATC 2 cut(s) 202, 539
BssNI GRCGYC 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 287, 640
Bst4CI ACNGT 1 cut(s) 584
Bst6I CTCTTC 5 cut(s) 95, 436, 456, 483, 726
BstACI GRCGYC 1 cut(s) 738
BstDEI CTNAG 2 cut(s) 72, 299
BstF5I GGATG 1 cut(s) 298
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 2 cut(s) 205, 542
BstMAI GTCTC 2 cut(s) 674, 734
BstMBI GATC 2 cut(s) 202, 539
BstMWI GCNNNNNNNGC 2 cut(s) 68, 230
BstNI CCWGG 2 cut(s) 287, 640
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 285, 638
BstSFI CTRYAG 1 cut(s) 133
BstV1I GCAGC 4 cut(s) 150, 300, 303, 622
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 2 cut(s) 444, 687
BtsIMutI CAGTG 4 cut(s) 444, 611, 687, 741
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 326, 606
CviAII CATG 5 cut(s) 163, 248, 330, 342, 770
CviJI RGCY 8 cut(s) 62, 76, 106, 141, 298, 313, 473, 648
CviKI_1 RGCY 8 cut(s) 62, 76, 106, 141, 298, 313, 473, 648
DdeI CTNAG 2 cut(s) 72, 299
DpnI GATC 2 cut(s) 204, 541
DpnII GATC 2 cut(s) 202, 539
Eam1104I CTCTTC 5 cut(s) 95, 436, 456, 483, 726
EarI CTCTTC 5 cut(s) 95, 436, 456, 483, 726
EciI GGCGGA 3 cut(s) 429, 473, 648
Eco24I GRGCYC 1 cut(s) 650
Eco47I GGWCC 2 cut(s) 326, 606
EcoRII CCWGG 2 cut(s) 285, 638
EcoT38I GRGCYC 1 cut(s) 650
FaeI CATG 5 cut(s) 166, 251, 333, 345, 773
FaiI YATR 7 cut(s) 164, 249, 272, 331, 343, 465, 771
FatI CATG 5 cut(s) 162, 247, 329, 341, 769
Fnu4HI GCNGC 7 cut(s) 139, 231, 234, 314, 317, 389, 636
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 650
Fsp4HI GCNGC 7 cut(s) 139, 231, 234, 314, 317, 389, 636
FspAI RTGCGCAY 1 cut(s) 262
FspBI CTAG 3 cut(s) 357, 380, 537
FspI TGCGCA 1 cut(s) 262
GlaI GCGC 1 cut(s) 262
GluI GCNGC 7 cut(s) 139, 231, 234, 314, 317, 389, 636
GsaI CCCAGC 1 cut(s) 473
GsuI CTGGAG 2 cut(s) 193, 308
HhaI GCGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 738
Hin1II CATG 5 cut(s) 166, 251, 333, 345, 773
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HinfI GANTC 1 cut(s) 587
HphI GGTGA 3 cut(s) 275, 569, 582
Hpy188I TCNGA 2 cut(s) 562, 622
Hpy99I CGWCG 2 cut(s) 229, 626
HpyAV CCTTC 2 cut(s) 171, 378
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 2 cut(s) 280, 738
HpyCH4V TGCA 1 cut(s) 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 230
HpyF3I CTNAG 2 cut(s) 72, 299
HpySE526I ACGT 2 cut(s) 280, 738
Hsp92I GRCGYC 1 cut(s) 738
Hsp92II CATG 5 cut(s) 166, 251, 333, 345, 773
HspAI GCGC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 202, 539
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 3 cut(s) 336, 478, 661
LpnPI CCDG 9 cut(s) 157, 272, 299, 483, 586, 625, 652, 679, 747
Lsp1109I GCAGC 4 cut(s) 150, 300, 303, 622
LweI GCATC 1 cut(s) 272
MaeI CTAG 3 cut(s) 357, 380, 537
MaeII ACGT 2 cut(s) 280, 738
MaeIII GTNAC 6 cut(s) 196, 281, 345, 575, 584, 739
MalI GATC 2 cut(s) 204, 541
MboI GATC 2 cut(s) 202, 539
MboII GAAGA 7 cut(s) 109, 112, 137, 423, 443, 470, 713
MflI RGATCY 1 cut(s) 539
MhlI GDGCHC 2 cut(s) 341, 650
MluCI AATT 2 cut(s) 66, 505
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 2 cut(s) 585, 645
MroXI GAANNNNTTC 1 cut(s) 181
MseI TTAA 3 cut(s) 405, 518, 630
MslI CAYNNNNRTG 1 cut(s) 582
MspR9I CCNGG 2 cut(s) 287, 640
MvaI CCWGG 2 cut(s) 287, 640
MwoI GCNNNNNNNGC 2 cut(s) 68, 230
NdeII GATC 2 cut(s) 202, 539
NlaIII CATG 5 cut(s) 166, 251, 333, 345, 773
NmuCI GTSAC 6 cut(s) 196, 281, 345, 575, 584, 739
NsbI TGCGCA 1 cut(s) 262
NspI RCATGY 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 582
PciI ACATGT 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 181
PkrI GCNGC 7 cut(s) 140, 232, 235, 315, 318, 390, 637
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 285, 638
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 2 cut(s) 285, 638
PspPI GGNCC 2 cut(s) 326, 606
PsuI RGATCY 1 cut(s) 539
RseI CAYNNNNRTG 1 cut(s) 582
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 3 cut(s) 405, 518, 630
SatI GCNGC 7 cut(s) 139, 231, 234, 314, 317, 389, 636
Sau3AI GATC 2 cut(s) 202, 539
Sau96I GGNCC 2 cut(s) 326, 606
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 2 cut(s) 287, 640
SduI GDGCHC 2 cut(s) 341, 650
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 133
SinI GGWCC 2 cut(s) 326, 606
SmiMI CAYNNNNRTG 1 cut(s) 582
Sse9I AATT 2 cut(s) 66, 505
SsiI CCGC 7 cut(s) 230, 233, 236, 388, 440, 484, 659
SspMI CTAG 3 cut(s) 357, 380, 537
StyD4I CCNGG 2 cut(s) 285, 638
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 2 cut(s) 283, 741
TaqI TCGA 1 cut(s) 644
TasI AATT 2 cut(s) 66, 505
TauI GCSGC 3 cut(s) 233, 236, 391
Tru1I TTAA 3 cut(s) 405, 518, 630
Tru9I TTAA 3 cut(s) 405, 518, 630
TscAI CASTG 4 cut(s) 451, 618, 694, 748
TseFI GTSAC 6 cut(s) 196, 281, 345, 575, 584, 739
TseI GCWGC 4 cut(s) 138, 313, 316, 635
Tsp45I GTSAC 6 cut(s) 196, 281, 345, 575, 584, 739
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 619
TspRI CASTG 4 cut(s) 451, 618, 694, 748
VpaK11BI GGWCC 2 cut(s) 326, 606
XceI RCATGY 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 181
XspI CTAG 3 cut(s) 357, 380, 537
ZraI GACGTC 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.