Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002349.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

39973 .. 40467

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgcactgtcctgggaagtcagcaaatagcgctagaatgttattccataaccctacctggtcgcgagcttggacagagatattgtctgtaactgacctccccaaaccgacagataagctggaagatccacgcgacaaaactcaaagccaatcaatattggaccctgaagcaactttggttagtgttccgctatctgatgagcaccctgagcagacagtacgcattggagaacaattagatcctgaaattcgggctgacttaaacaagttgctgaaagaatactccaaggtcttcgcatggtcttacgcggatatgccagagatttccttagatatcatatgtcctaagctcaacatcaaaccattaacactcccggtcaagcaaaagcataaagcattcgatgaagagaaaaatcaagccatcctggcagaagtctccaaactttgggatattggcttcatcctcgaaaccgcccgcaatggatatccaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

164

Amino Acids

18.67

Weight (kDa)

5.4

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccII	CGCG	3 cut(s)	64, 132, 308
AciI	CCGC	4 cut(s)	188, 308, 471, 475
AclWI	GGATC	2 cut(s)	119, 233
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	219
AfeI	AGCGCT	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	444
AjnI	CCWGG	3 cut(s)	10, 56, 423
AluBI	AGCT	3 cut(s)	68, 118, 349
AluI	AGCT	3 cut(s)	68, 118, 349
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	119, 233
Aor51HI	AGCGCT	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	204
BccI	CCATC	1 cut(s)	428
BciT130I	CCWGG	3 cut(s)	12, 58, 425
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	33
BglI	GCCNNNNNGGC	1 cut(s)	425
Bme1390I	CCNGG	4 cut(s)	12, 58, 374, 425
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	4 cut(s)	12, 58, 374, 425
BpiI	GAAGAC	1 cut(s)	283
Bpu10I	CCTNAGC	2 cut(s)	207, 345
BpuMI	CCSGG	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	11, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	3 cut(s)	12, 58, 425
BseDI	CCNNGG	2 cut(s)	11, 285
BseGI	GGATG	2 cut(s)	420, 459
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	198
Bsh1236I	CGCG	3 cut(s)	64, 132, 308
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	124, 238
Bsp68I	TCGCGA	1 cut(s)	64
BspACI	CCGC	4 cut(s)	188, 308, 471, 475
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	3 cut(s)	64, 132, 308
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	119, 233
BsrDI	GCAATG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	11, 285
BssMI	GATC	2 cut(s)	124, 238
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	12, 58, 425
Bst4CI	ACNGT	2 cut(s)	8, 217
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	66, 475
BstDEI	CTNAG	3 cut(s)	207, 328, 345
BstF5I	GGATG	2 cut(s)	420, 459
BstFNI	CGCG	3 cut(s)	64, 132, 308
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	2 cut(s)	127, 241
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	2 cut(s)	124, 238
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 208, 425
BstNI	CCWGG	3 cut(s)	12, 58, 425
BstSCI	CCNGG	4 cut(s)	10, 56, 372, 423
BstUI	CGCG	3 cut(s)	64, 132, 308
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	124, 238
BstYI	RGATCY	2 cut(s)	124, 238
BtsCI	GGATG	2 cut(s)	420, 459
BtsIMutI	CAGTG	1 cut(s)	4
BtuMI	TCGCGA	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	66, 475
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	160
CsiI	ACCWGGT	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	7 cut(s)	68, 118, 147, 254, 349, 419, 456
CviKI_1	RGCY	7 cut(s)	68, 118, 147, 254, 349, 419, 456
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	3 cut(s)	207, 328, 345
DpnI	GATC	2 cut(s)	126, 240
DpnII	GATC	2 cut(s)	124, 238
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	285
Eco32I	GATATC	2 cut(s)	334, 485
Eco47I	GGWCC	1 cut(s)	160
Eco47III	AGCGCT	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	186
EcoRII	CCWGG	3 cut(s)	10, 56, 423
EcoRV	GATATC	2 cut(s)	334, 485
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	1 cut(s)	300
FaiI	YATR	6 cut(s)	48, 298, 314, 338, 340, 390
FatI	CATG	1 cut(s)	296
FauI	CCCGC	1 cut(s)	482
FauNDI	CATATG	1 cut(s)	338
FokI	GGATG	2 cut(s)	407, 446
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	33
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HpaII	CCGG	1 cut(s)	374
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	63, 242
HpyCH4III	ACNGT	2 cut(s)	8, 217
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 208, 425
HpyF3I	CTNAG	3 cut(s)	207, 328, 345
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	124, 238
MabI	ACCWGGT	1 cut(s)	56
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	126, 240
MboI	GATC	2 cut(s)	124, 238
MboII	GAAGA	3 cut(s)	134, 283, 416
MflI	RGATCY	2 cut(s)	124, 238
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	2 cut(s)	233, 246
MnlI	CCTC	2 cut(s)	107, 473
MseI	TTAA	2 cut(s)	260, 365
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	4 cut(s)	12, 58, 374, 425
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	3 cut(s)	12, 58, 425
MvnI	CGCG	3 cut(s)	64, 132, 308
MwoI	GCNNNNNNNGC	3 cut(s)	29, 208, 425
NciI	CCSGG	1 cut(s)	374
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	2 cut(s)	124, 238
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	162
NruI	TCGCGA	1 cut(s)	64
PctI	GAATGC	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	444
Psp6I	CCWGG	3 cut(s)	10, 56, 423
PspGI	CCWGG	3 cut(s)	10, 56, 423
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	124, 238
RruI	TCGCGA	1 cut(s)	64
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	260, 365
Sau3AI	GATC	2 cut(s)	124, 238
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	4 cut(s)	12, 58, 374, 425
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	6 cut(s)	59, 70, 99, 120, 291, 351
SexAI	ACCWGGT	1 cut(s)	56
SinI	GGWCC	1 cut(s)	160
Sse9I	AATT	2 cut(s)	233, 246
SsiI	CCGC	4 cut(s)	188, 308, 471, 475
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	4 cut(s)	10, 56, 372, 423
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	8, 217
TaqI	TCGA	2 cut(s)	399, 465
TasI	AATT	2 cut(s)	233, 246
Tru1I	TTAA	2 cut(s)	260, 365
Tru9I	TTAA	2 cut(s)	260, 365
TspDTI	ATGAA	2 cut(s)	417, 448
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	246
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.