Rmu_sc0002398.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002398.1
N/A
Physical Location & Seq
Reverse (-)
88308 .. 89456
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 588 bp
atgaggcggcccaagcccattgatgtagcccagaatcaggccctgccacgtcagcagctccggcgacttttccagccagttttcagacaactttttcctatcacttttttcggccaactttcccggcaaccaatttcaaggatgagtaacctgaacaagttgagcttcactccactagagacaacaggtgcaggataccaaaagtggaatgagtatctcaatgaggaagacccaagaaaactatgggcagaactcgagcaatgctttggcaatgttcgtgactccctgcttcctgatttagaagtgagatggcataacctccgcttctgtgatttccaatatgtacttgactacaattcggaagcacttcttatcaagtctttgatggaattctgtgggcagaaaatcattaatacgatgttgatcgagaagactctctctaccttccccatctcggcattaatgatagccaagaactatcggattgatgtcaatgccaaatgcatcacaagatttcatgagtttattggagccatgaacgtagctgaaaagcacgacagcatacttgtgaagaactataactcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

195

Amino Acids

22.94

Weight (kDa)

9.08

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 7, 322
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 389
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 2 cut(s) 37, 454
AgsI TTSAA 1 cut(s) 138
AjiI CACGTC 1 cut(s) 50
AluBI AGCT 3 cut(s) 58, 165, 545
AluI AGCT 3 cut(s) 58, 165, 545
Alw26I GTCTC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 3 cut(s) 8, 39, 112
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 389
AseI ATTAAT 2 cut(s) 411, 461
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 9, 40
AsuC2I CCSGG 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 234, 437
BbvI GCAGC 1 cut(s) 67
BccI CCATC 3 cut(s) 303, 379, 458
BciVI GTATCC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 176
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 2 cut(s) 8, 56
BlsI GCNGC 2 cut(s) 9, 57
Bme1390I CCNGG 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 9, 40
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 513
BpiI GAAGAC 2 cut(s) 234, 437
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BpuMI CCSGG 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 422
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 454
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 2 cut(s) 266, 277
Bse8I GATNNNNATC 1 cut(s) 422
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 37, 454
BseMI GCAATG 2 cut(s) 266, 277
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 3 cut(s) 10, 41, 114
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 2 cut(s) 61, 124
BslI CCNNNNNNNGG 2 cut(s) 37, 454
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 3 cut(s) 10, 41, 114
BsoBI CYCGRG 1 cut(s) 254
Bsp143I GATC 1 cut(s) 423
BspACI CCGC 2 cut(s) 7, 322
BspANI GGCC 3 cut(s) 10, 41, 114
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 532
BsrDI GCAATG 2 cut(s) 266, 277
BsrI ACTGG 1 cut(s) 77
BssMI GATC 1 cut(s) 423
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 426
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 423
BstMWI GCNNNNNNNGC 3 cut(s) 13, 52, 61
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 2 cut(s) 234, 437
BsuI GTATCC 1 cut(s) 188
BsuRI GGCC 3 cut(s) 10, 41, 114
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 43
CciI TCATGA 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 9, 40
Csp6I GTAC 1 cut(s) 344
CviAII CATG 2 cut(s) 518, 535
CviQI GTAC 1 cut(s) 344
DpnI GATC 1 cut(s) 425
DpnII GATC 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 389
EcoT22I ATGCAT 1 cut(s) 506
FaeI CATG 2 cut(s) 521, 538
FaiI YATR 7 cut(s) 244, 315, 342, 519, 536, 563, 579
FalI AAGNNNNNCTT 4 cut(s) 149, 181, 354, 386
FatI CATG 2 cut(s) 517, 534
Fnu4HI GCNGC 2 cut(s) 8, 56
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 8, 56
FspBI CTAG 1 cut(s) 176
GluI GCNGC 2 cut(s) 8, 56
HaeIII GGCC 3 cut(s) 10, 41, 114
HapII CCGG 2 cut(s) 61, 124
Hin1II CATG 2 cut(s) 521, 538
HinfI GANTC 3 cut(s) 34, 281, 433
HpaII CCGG 2 cut(s) 61, 124
Hpy188I TCNGA 3 cut(s) 86, 361, 483
Hpy188III TCNNGA 5 cut(s) 278, 293, 427, 518, 585
HpyAV CCTTC 1 cut(s) 454
HpyCH4IV ACGT 2 cut(s) 49, 540
HpyCH4V TGCA 2 cut(s) 191, 504
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 52, 61
HpySE526I ACGT 2 cut(s) 49, 540
Hsp92II CATG 2 cut(s) 521, 538
Kzo9I GATC 1 cut(s) 423
LmnI GCTCC 2 cut(s) 63, 530
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 513
MaeI CTAG 1 cut(s) 176
MaeII ACGT 2 cut(s) 49, 540
MaeIII GTNAC 2 cut(s) 146, 278
MalI GATC 1 cut(s) 425
MboI GATC 1 cut(s) 423
MboII GAAGA 3 cut(s) 239, 442, 583
MluCI AATT 3 cut(s) 132, 355, 389
MlyI GAGTC 2 cut(s) 275, 427
MnlI CCTC 2 cut(s) 217, 329
Mph1103I ATGCAT 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 2 cut(s) 411, 461
MslI CAYNNNNRTG 1 cut(s) 566
MspI CCGG 2 cut(s) 61, 124
MspR9I CCNGG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 13, 52, 61
NciI CCSGG 1 cut(s) 124
NdeII GATC 1 cut(s) 423
NlaIII CATG 2 cut(s) 521, 538
NlaIV GGNNCC 1 cut(s) 532
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 506
PaeR7I CTCGAG 1 cut(s) 254
PagI TCATGA 1 cut(s) 517
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 9, 57
PleI GAGTC 2 cut(s) 275, 427
PpsI GAGTC 2 cut(s) 275, 427
PshBI ATTAAT 2 cut(s) 411, 461
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 2 cut(s) 9, 40
PspXI VCTCGAGB 1 cut(s) 254
PstNI CAGNNNCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 2 cut(s) 411, 461
SatI GCNGC 2 cut(s) 8, 56
Sau3AI GATC 1 cut(s) 423
Sau96I GGNCC 2 cut(s) 9, 40
SchI GAGTC 2 cut(s) 275, 427
ScrFI CCNGG 1 cut(s) 124
SetI ASST 9 cut(s) 52, 60, 153, 167, 190, 321, 446, 543, 547
SfaNI GCATC 1 cut(s) 513
Sfr274I CTCGAG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 3 cut(s) 132, 355, 389
SsiI CCGC 2 cut(s) 7, 322
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 122
TaiI ACGT 2 cut(s) 52, 543
TaqI TCGA 2 cut(s) 255, 426
TasI AATT 3 cut(s) 132, 355, 389
TatI WGTACW 1 cut(s) 343
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 411, 461
Tru9I TTAA 2 cut(s) 411, 461
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 506, 551
VspI ATTAAT 2 cut(s) 411, 461
XapI RAATTY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XhoI CTCGAG 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.